Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47158 * 2 1 4 4 C 1.37104 * 119.99578 * 264.76568 * 3 2 1 5 5 H 1.08005 * 119.99655 * 138.85341 * 4 3 2 6 6 C 1.38944 * 120.00291 * 318.85480 * 4 3 2 7 7 N 1.31417 * 119.99931 * 341.82456 * 6 4 3 8 8 Si 1.86795 * 120.00135 * 161.83144 * 6 4 3 9 9 H 1.48500 * 109.47331 * 89.99823 * 8 6 4 10 10 H 1.48502 * 109.46998 * 209.99953 * 8 6 4 11 11 H 1.48506 * 109.47048 * 329.99419 * 8 6 4 12 12 C 1.34776 * 120.00156 * 84.76832 * 3 2 1 13 13 O 1.21295 * 119.99594 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00182 * 359.97438 * 12 3 2 15 15 O 1.42896 * 109.47367 * 180.02562 * 14 12 3 16 16 C 1.35947 * 117.00331 * 180.02562 * 15 14 12 17 17 C 1.38709 * 120.02469 * 0.27496 * 16 15 14 18 18 C 1.38152 * 119.96463 * 180.25064 * 17 16 15 19 19 C 1.38462 * 120.02914 * 359.47521 * 18 17 16 20 20 F 1.35099 * 119.96673 * 180.29852 * 19 18 17 21 21 C 1.38450 * 120.05867 * 0.27310 * 19 18 17 22 22 C 1.38145 * 120.03337 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47138 * 300.00301 * 1 2 3 24 24 H 1.09005 * 109.47016 * 60.00476 * 1 2 3 25 25 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47138 * 239.99699 * 2 1 3 27 27 H 1.08998 * 109.46888 * 119.99880 * 2 1 3 28 28 H 0.96996 * 119.99814 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46672 * 59.99837 * 14 12 3 30 30 H 1.09005 * 109.47182 * 300.00247 * 14 12 3 31 31 H 1.07994 * 120.01909 * 0.02576 * 17 16 15 32 32 H 1.07998 * 119.98555 * 179.74471 * 18 17 16 33 33 H 1.08004 * 119.98097 * 180.02562 * 21 19 18 34 34 H 1.08002 * 120.01576 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9913 -1.1825 5 1 2.0743 3.0218 -1.3536 6 6 3.0372 1.2840 -2.1606 7 7 3.6792 0.1816 -1.8451 8 14 3.0500 1.9002 -3.9239 9 1 4.2057 2.8117 -4.1214 10 1 3.1660 0.7458 -4.8508 11 1 1.7885 2.6330 -4.2014 12 6 2.1426 2.0520 1.1623 13 8 2.5465 3.1958 1.1622 14 6 1.7787 1.3816 2.4619 15 8 1.9944 2.2902 3.5435 16 6 1.7132 1.8386 4.7945 17 6 1.2450 0.5457 4.9768 18 6 0.9547 0.0898 6.2482 19 6 1.1413 0.9191 7.3411 20 9 0.8628 0.4699 8.5844 21 6 1.6135 2.2081 7.1610 22 6 1.8998 2.6683 5.8903 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1593 -0.3123 -2.5279 29 1 2.4001 0.4968 2.6007 30 1 0.7292 1.0883 2.4381 31 1 1.1040 -0.1029 4.1249 32 1 0.5863 -0.9154 6.3901 33 1 1.7590 2.8538 8.0145 34 1 2.2685 3.6737 5.7502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -103.197715 kcal Electronic energy + Delta-G solvation = -19767.536514 eV Core-core repulsion = 16387.064446 eV Total energy + Delta-G solvation = -3380.472068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.80538 -41.35986 -40.17766 -38.11350 -36.87336 -34.11442 -32.30205 -31.21753 -30.85974 -29.30094 -26.58903 -24.25043 -23.87621 -23.18846 -20.98690 -19.51779 -18.72674 -18.34383 -17.83933 -17.43152 -17.25107 -16.71276 -16.46808 -16.07260 -15.60684 -15.36011 -15.03569 -14.62855 -14.51998 -14.17570 -13.96293 -13.70897 -13.57584 -13.29363 -13.16233 -12.86963 -12.67067 -12.37792 -12.09331 -11.99198 -11.85467 -11.71736 -10.92413 -10.42944 -10.18917 -9.46386 -9.13175 -8.37929 -6.15172 0.15973 0.19143 1.37794 1.41953 1.53701 1.84924 1.93102 2.35301 2.56139 2.97656 3.13264 3.32379 3.65601 3.80277 3.86515 3.97541 4.12850 4.17788 4.33560 4.36614 4.57805 4.60487 4.82337 4.90989 5.02475 5.10490 5.12804 5.24613 5.30274 5.43582 5.53384 5.69935 6.17442 6.30284 6.53220 7.13424 7.35906 7.96937 8.66049 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042671 B = 0.003962 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.029271 B = 7065.998978 C = 7429.069876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 N -0.444 5.444 4 C -0.345 4.345 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.888 5.888 8 Si 0.983 3.017 9 H -0.280 1.280 10 H -0.265 1.265 11 H -0.265 1.265 12 C 0.443 3.557 13 O -0.618 6.618 14 C 0.061 3.939 15 O -0.317 6.317 16 C 0.102 3.898 17 C -0.184 4.184 18 C -0.106 4.106 19 C 0.042 3.958 20 F -0.146 7.146 21 C -0.106 4.106 22 C -0.136 4.136 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.275 0.725 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 -5.613 12.634 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.165 5.165 4 C -0.473 4.473 5 H 0.080 0.920 6 C -0.194 4.194 7 N -0.525 5.525 8 Si 0.806 3.194 9 H -0.206 1.206 10 H -0.189 1.189 11 H -0.190 1.190 12 C 0.232 3.768 13 O -0.503 6.503 14 C -0.017 4.017 15 O -0.230 6.230 16 C 0.056 3.944 17 C -0.203 4.203 18 C -0.124 4.124 19 C 0.023 3.977 20 F -0.125 7.125 21 C -0.124 4.124 22 C -0.154 4.154 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.687 -5.066 12.503 15.057 hybrid contribution 0.271 0.191 -0.806 0.871 sum -6.416 -4.876 11.698 14.205 Atomic orbital electron populations 1.22150 0.94854 1.02949 1.01547 1.21717 0.94332 0.82952 1.03754 1.43662 1.55853 1.13204 1.03740 1.19363 1.37178 0.98437 0.92344 0.91999 1.26153 0.92822 0.96499 1.03963 1.69973 1.29014 1.17974 1.35505 0.85116 0.78797 0.78243 0.77265 1.20627 1.18935 1.18973 1.20858 0.82131 0.87936 0.85887 1.90517 1.51506 1.20866 1.87459 1.22589 1.03502 0.92039 0.83582 1.86177 1.82162 1.41587 1.13026 1.19539 0.96313 0.93990 0.84566 1.21380 1.04648 0.95004 0.99239 1.21182 0.99686 1.01189 0.90366 1.17743 1.05665 0.94466 0.79856 1.91473 1.91943 1.89551 1.39490 1.21131 0.98847 0.94712 0.97755 1.20482 1.04233 1.01071 0.89646 0.92584 0.93857 0.89087 0.89790 0.90943 0.91508 0.87936 0.87206 0.82642 0.81927 0.81773 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 10.15 71.98 0.73 -4.09 16 2 C 0.10 3.75 5.41 86.38 0.47 4.22 16 3 N -0.44 -22.14 2.50 -635.54 -1.59 -23.74 16 4 C -0.35 -19.31 8.84 84.04 0.74 -18.57 16 5 H 0.06 3.72 7.82 -2.91 -0.02 3.69 16 6 C 0.01 0.47 4.95 84.92 0.42 0.89 16 7 N -0.89 -46.58 11.61 21.66 0.25 -46.33 16 8 Si 0.98 41.44 29.59 68.60 2.03 43.47 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 C 0.44 22.11 7.67 87.66 0.67 22.79 16 13 O -0.62 -37.13 16.41 15.96 0.26 -36.87 16 14 C 0.06 2.18 3.83 71.24 0.27 2.45 16 15 O -0.32 -12.00 9.67 -73.92 -0.71 -12.72 16 16 C 0.10 2.98 6.69 22.49 0.15 3.13 16 17 C -0.18 -4.27 9.04 22.36 0.20 -4.06 16 18 C -0.11 -2.12 10.02 22.30 0.22 -1.89 16 19 C 0.04 0.90 7.30 22.37 0.16 1.07 16 20 F -0.15 -3.18 17.27 44.97 0.78 -2.41 16 21 C -0.11 -2.22 10.02 22.30 0.22 -2.00 16 22 C -0.14 -3.47 9.98 22.36 0.22 -3.25 16 23 H 0.06 1.55 6.60 -2.39 -0.02 1.54 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 3.73 5.76 -2.39 -0.01 3.72 16 27 H 0.07 2.43 6.66 -2.39 -0.02 2.42 16 28 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 29 H 0.10 3.20 6.92 -2.39 -0.02 3.18 16 30 H 0.11 3.18 6.07 -2.38 -0.01 3.16 16 31 H 0.16 2.99 6.30 -2.91 -0.02 2.97 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -70.55 297.14 6.63 -63.92 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.12 Total: 14.00 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 4.49 Total: 0.68 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -1.34 Total: -70.07 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.45 Total: -49.59 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -70.55 6.63 -63.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.278 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds