Wall clock time and date at job start Mon Mar 30 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.47009 * 2 1 4 4 C 1.37094 * 119.99879 * 264.74680 * 3 2 1 5 5 H 1.07999 * 120.00092 * 146.16517 * 4 3 2 6 6 C 1.38953 * 120.00168 * 326.16574 * 4 3 2 7 7 N 1.31404 * 119.99978 * 337.68751 * 6 4 3 8 8 Si 1.86799 * 119.99956 * 157.69061 * 6 4 3 9 9 H 1.48500 * 109.47495 * 59.99805 * 8 6 4 10 10 H 1.48500 * 109.47122 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47226 * 299.99932 * 8 6 4 12 12 C 1.34775 * 119.99795 * 84.75136 * 3 2 1 13 13 O 1.21294 * 119.99947 * 179.97438 * 12 3 2 14 14 C 1.50698 * 120.00320 * 359.97438 * 12 3 2 15 15 O 1.42901 * 109.47356 * 180.02562 * 14 12 3 16 16 C 1.35952 * 116.99850 * 180.02562 * 15 14 12 17 17 C 1.38656 * 120.06619 * 359.97438 * 16 15 14 18 18 C 1.38180 * 119.97041 * 180.02562 * 17 16 15 19 19 C 1.38255 * 120.09730 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.12429 * 0.02562 * 19 18 17 21 21 C 1.38336 * 120.03042 * 359.97438 * 20 19 18 22 22 F 1.35091 * 120.04655 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.46887 * 59.99638 * 1 2 3 24 24 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46738 * 300.00298 * 1 2 3 26 26 H 1.08997 * 109.47034 * 240.00404 * 2 1 3 27 27 H 1.08993 * 109.47248 * 119.99779 * 2 1 3 28 28 H 0.97006 * 120.00533 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46801 * 60.00305 * 14 12 3 30 30 H 1.08996 * 109.47099 * 300.00850 * 14 12 3 31 31 H 1.08002 * 120.01518 * 0.03974 * 17 16 15 32 32 H 1.08004 * 119.95337 * 180.27479 * 18 17 16 33 33 H 1.07998 * 119.94287 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.98526 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1815 3.0506 -1.3089 6 6 2.9007 1.2467 -2.2178 7 7 3.5052 0.1089 -1.9594 8 14 2.7828 1.8631 -3.9772 9 1 3.4562 3.1822 -4.0858 10 1 3.4435 0.8931 -4.8869 11 1 1.3543 2.0039 -4.3577 12 6 2.1423 2.0522 1.1623 13 8 2.5470 3.1956 1.1624 14 6 1.7781 1.3818 2.4619 15 8 1.9934 2.2906 3.5435 16 6 1.7118 1.8389 4.7945 17 6 1.2378 0.5487 4.9769 18 6 0.9518 0.0919 6.2492 19 6 1.1380 0.9192 7.3411 20 6 1.6104 2.2065 7.1638 21 6 1.8985 2.6692 5.8924 22 9 2.3606 3.9267 5.7188 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8898 -0.4112 -2.6823 29 1 2.3995 0.4972 2.6010 30 1 0.7286 1.0884 2.4377 31 1 1.0925 -0.0990 4.1249 32 1 0.5868 -0.9146 6.3914 33 1 0.9132 0.5597 8.3344 34 1 1.7554 2.8507 8.0184 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:48 Heat of formation + Delta-G solvation = -81.333909 kcal Electronic energy + Delta-G solvation = -20040.847339 eV Core-core repulsion = 16661.323357 eV Total energy + Delta-G solvation = -3379.523982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.60765 -39.99866 -38.53576 -37.07918 -35.00962 -32.18071 -30.72794 -30.14255 -29.57862 -27.97679 -24.79634 -22.86268 -22.43727 -22.18911 -19.21624 -18.42543 -16.96805 -16.82847 -16.51810 -16.13687 -15.70770 -15.20609 -14.95806 -14.82387 -14.40155 -14.15619 -13.64122 -13.31324 -13.00720 -12.78633 -12.46557 -12.22834 -11.89115 -11.72720 -11.62224 -11.22468 -11.08112 -10.98902 -10.92244 -10.41138 -10.37183 -10.18845 -9.02802 -8.99139 -8.48984 -8.12896 -7.60024 -6.41388 -4.02710 1.07945 1.25096 3.08310 3.15612 3.22548 3.29306 3.54703 3.74644 4.11825 4.28905 4.64792 4.74750 4.86881 4.95667 5.09246 5.15220 5.33079 5.45632 5.49823 5.59435 5.83347 5.94618 6.00915 6.10018 6.13320 6.20254 6.30787 6.37068 6.63836 6.78066 7.14962 7.42820 7.52971 8.14277 8.42088 9.09002 9.28859 9.87857 10.62574 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035044 B = 0.004545 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.804437 B = 6158.469111 C = 6692.144748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.434 5.434 4 C -0.308 4.308 5 H 0.095 0.905 6 C 0.037 3.963 7 N -0.868 5.868 8 Si 0.922 3.078 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.456 3.544 13 O -0.559 6.559 14 C 0.046 3.954 15 O -0.278 6.278 16 C 0.107 3.893 17 C -0.188 4.188 18 C -0.089 4.089 19 C -0.140 4.140 20 C -0.118 4.118 21 C 0.065 3.935 22 F -0.131 7.131 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.118 0.882 27 H 0.046 0.954 28 H 0.270 0.730 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 -5.376 13.209 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.033 4.033 3 N -0.155 5.155 4 C -0.435 4.435 5 H 0.112 0.888 6 C -0.168 4.168 7 N -0.506 5.506 8 Si 0.748 3.252 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.243 3.757 13 O -0.440 6.440 14 C -0.033 4.033 15 O -0.190 6.190 16 C 0.059 3.941 17 C -0.207 4.207 18 C -0.107 4.107 19 C -0.158 4.158 20 C -0.137 4.137 21 C 0.045 3.955 22 F -0.109 7.109 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.136 0.864 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.148 -4.707 12.995 15.127 hybrid contribution -0.023 -0.025 -0.879 0.880 sum -6.171 -4.732 12.116 14.397 Atomic orbital electron populations 1.22234 0.97972 1.00571 1.01680 1.21686 0.91915 0.85326 1.04398 1.43435 1.55907 1.11922 1.04227 1.19459 1.40185 0.95719 0.88144 0.88767 1.25356 0.94215 0.96482 1.00698 1.69903 1.32273 1.15244 1.33221 0.86067 0.78711 0.78844 0.81562 1.19610 1.20900 1.19804 1.19759 0.83692 0.88452 0.83821 1.90583 1.49045 1.18238 1.86148 1.22837 1.01498 0.92642 0.86292 1.86289 1.80879 1.40469 1.11321 1.19260 0.96559 0.92898 0.85394 1.21265 1.05302 0.94785 0.99357 1.20993 0.98248 0.99864 0.91628 1.20859 1.02327 0.93330 0.99300 1.20988 1.00630 0.97338 0.94722 1.17044 1.05488 0.80811 0.92138 1.91518 1.86451 1.36809 1.96132 0.92079 0.92787 0.94073 0.86425 0.93550 0.92006 0.89998 0.90298 0.84342 0.85183 0.85120 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 10.15 37.16 0.38 -2.45 16 2 C 0.09 1.88 5.44 -4.04 -0.02 1.86 16 3 N -0.43 -10.88 2.56 -114.81 -0.29 -11.18 16 4 C -0.31 -8.46 8.98 -14.93 -0.13 -8.59 16 5 H 0.09 2.73 7.70 -52.49 -0.40 2.32 16 6 C 0.04 0.95 4.92 -17.47 -0.09 0.87 16 7 N -0.87 -22.78 11.33 55.50 0.63 -22.15 16 8 Si 0.92 20.24 29.61 -169.99 -5.03 15.20 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 12 C 0.46 11.51 7.67 -10.99 -0.08 11.42 16 13 O -0.56 -16.60 16.32 -14.36 -0.23 -16.83 16 14 C 0.05 0.88 3.83 36.00 0.14 1.02 16 15 O -0.28 -5.76 9.53 -39.50 -0.38 -6.14 16 16 C 0.11 1.78 6.69 -39.18 -0.26 1.51 16 17 C -0.19 -2.45 9.04 -39.45 -0.36 -2.81 16 18 C -0.09 -0.92 10.04 -39.60 -0.40 -1.31 16 19 C -0.14 -1.37 10.04 -39.57 -0.40 -1.77 16 20 C -0.12 -1.37 10.02 -39.54 -0.40 -1.77 16 21 C 0.07 1.02 7.31 -39.30 -0.29 0.74 16 22 F -0.13 -2.33 17.11 2.25 0.04 -2.29 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.65 6.59 -51.93 -0.34 0.30 16 26 H 0.12 2.70 5.34 -51.93 -0.28 2.42 16 27 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.08 1.41 6.93 -51.93 -0.36 1.05 16 30 H 0.08 1.30 6.06 -51.93 -0.31 0.98 16 31 H 0.14 1.60 6.30 -52.49 -0.33 1.27 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -32.62 296.25 -6.34 -38.96 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.62 Total: 1.24 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.91 Total: -1.28 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.34 Total: -33.33 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.61 Total: -22.97 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.62 -6.34 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.376 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds