Wall clock time and date at job start Mon Mar 30 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.47009 * 2 1 4 4 C 1.37094 * 119.99879 * 264.74680 * 3 2 1 5 5 H 1.07999 * 120.00092 * 146.16517 * 4 3 2 6 6 C 1.38953 * 120.00168 * 326.16574 * 4 3 2 7 7 N 1.31404 * 119.99978 * 337.68751 * 6 4 3 8 8 Si 1.86799 * 119.99956 * 157.69061 * 6 4 3 9 9 H 1.48500 * 109.47495 * 59.99805 * 8 6 4 10 10 H 1.48500 * 109.47122 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47226 * 299.99932 * 8 6 4 12 12 C 1.34775 * 119.99795 * 84.75136 * 3 2 1 13 13 O 1.21294 * 119.99947 * 179.97438 * 12 3 2 14 14 C 1.50698 * 120.00320 * 359.97438 * 12 3 2 15 15 O 1.42901 * 109.47356 * 180.02562 * 14 12 3 16 16 C 1.35952 * 116.99850 * 180.02562 * 15 14 12 17 17 C 1.38656 * 120.06619 * 359.97438 * 16 15 14 18 18 C 1.38180 * 119.97041 * 180.02562 * 17 16 15 19 19 C 1.38255 * 120.09730 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.12429 * 0.02562 * 19 18 17 21 21 C 1.38336 * 120.03042 * 359.97438 * 20 19 18 22 22 F 1.35091 * 120.04655 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.46887 * 59.99638 * 1 2 3 24 24 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46738 * 300.00298 * 1 2 3 26 26 H 1.08997 * 109.47034 * 240.00404 * 2 1 3 27 27 H 1.08993 * 109.47248 * 119.99779 * 2 1 3 28 28 H 0.97006 * 120.00533 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46801 * 60.00305 * 14 12 3 30 30 H 1.08996 * 109.47099 * 300.00850 * 14 12 3 31 31 H 1.08002 * 120.01518 * 0.03974 * 17 16 15 32 32 H 1.08004 * 119.95337 * 180.27479 * 18 17 16 33 33 H 1.07998 * 119.94287 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.98526 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1815 3.0506 -1.3089 6 6 2.9007 1.2467 -2.2178 7 7 3.5052 0.1089 -1.9594 8 14 2.7828 1.8631 -3.9772 9 1 3.4562 3.1822 -4.0858 10 1 3.4435 0.8931 -4.8869 11 1 1.3543 2.0039 -4.3577 12 6 2.1423 2.0522 1.1623 13 8 2.5470 3.1956 1.1624 14 6 1.7781 1.3818 2.4619 15 8 1.9934 2.2906 3.5435 16 6 1.7118 1.8389 4.7945 17 6 1.2378 0.5487 4.9769 18 6 0.9518 0.0919 6.2492 19 6 1.1380 0.9192 7.3411 20 6 1.6104 2.2065 7.1638 21 6 1.8985 2.6692 5.8924 22 9 2.3606 3.9267 5.7188 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8898 -0.4112 -2.6823 29 1 2.3995 0.4972 2.6010 30 1 0.7286 1.0884 2.4377 31 1 1.0925 -0.0990 4.1249 32 1 0.5868 -0.9146 6.3914 33 1 0.9132 0.5597 8.3344 34 1 1.7554 2.8507 8.0184 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:48 Heat of formation + Delta-G solvation = -101.595028 kcal Electronic energy + Delta-G solvation = -20041.725927 eV Core-core repulsion = 16661.323357 eV Total energy + Delta-G solvation = -3380.402570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83267 -41.32264 -40.17464 -38.31312 -36.95170 -34.12900 -31.67722 -31.35280 -31.18755 -29.45835 -26.64954 -24.17439 -23.67263 -23.37648 -20.97380 -19.66205 -18.77656 -18.07047 -17.83081 -17.55256 -17.35636 -16.80387 -16.39736 -16.16425 -15.69788 -15.36357 -15.26536 -14.88183 -14.55697 -14.06603 -13.71356 -13.65618 -13.56367 -13.19692 -12.89361 -12.73050 -12.62070 -12.38949 -12.16130 -12.12587 -12.05609 -11.79898 -10.95356 -10.47840 -9.93195 -9.56745 -9.23082 -8.40931 -6.11191 0.14259 0.27648 1.36696 1.40801 1.50388 1.78138 1.87724 2.32849 2.62749 2.94455 3.06117 3.29033 3.67468 3.80100 3.92235 4.02931 4.07689 4.30023 4.34128 4.36059 4.53397 4.58971 4.80815 4.99540 5.01990 5.11785 5.28246 5.29572 5.41451 5.43378 5.53977 5.71388 6.10420 6.26082 6.48253 7.09491 7.33697 7.93331 8.61370 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035044 B = 0.004545 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.804437 B = 6158.469111 C = 6692.144748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.086 3.914 3 N -0.440 5.440 4 C -0.349 4.349 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.882 5.882 8 Si 0.984 3.016 9 H -0.280 1.280 10 H -0.267 1.267 11 H -0.262 1.262 12 C 0.434 3.566 13 O -0.624 6.624 14 C 0.065 3.935 15 O -0.323 6.323 16 C 0.066 3.934 17 C -0.189 4.189 18 C -0.078 4.078 19 C -0.122 4.122 20 C -0.113 4.113 21 C 0.024 3.976 22 F -0.157 7.157 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.278 0.722 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 -8.471 14.830 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 N -0.160 5.160 4 C -0.476 4.476 5 H 0.080 0.920 6 C -0.194 4.194 7 N -0.519 5.519 8 Si 0.807 3.193 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.187 1.187 12 C 0.223 3.777 13 O -0.511 6.511 14 C -0.013 4.013 15 O -0.237 6.237 16 C 0.020 3.980 17 C -0.208 4.208 18 C -0.095 4.095 19 C -0.140 4.140 20 C -0.131 4.131 21 C 0.004 3.996 22 F -0.136 7.136 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.171 0.829 32 H 0.189 0.811 33 H 0.192 0.808 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.693 -7.867 14.629 18.305 hybrid contribution 0.458 0.847 -1.252 1.579 sum -7.234 -7.020 13.377 16.750 Atomic orbital electron populations 1.22136 0.94864 1.02998 1.01398 1.21886 0.94469 0.82766 1.04544 1.43738 1.55196 1.13343 1.03700 1.19387 1.42784 0.95070 0.90376 0.91971 1.26071 0.93023 0.96482 1.03826 1.69956 1.31649 1.15692 1.34607 0.85150 0.79171 0.78042 0.76915 1.20573 1.19137 1.18689 1.20778 0.82955 0.88029 0.85900 1.90522 1.52008 1.21092 1.87429 1.22572 1.03484 0.91863 0.83374 1.86199 1.82473 1.41934 1.13089 1.19657 0.99547 0.95028 0.83801 1.21541 1.04582 0.93218 1.01428 1.21524 0.96173 1.01553 0.90293 1.21436 0.99397 0.91892 1.01285 1.21372 0.99497 0.98686 0.93551 1.17697 1.07730 0.80281 0.93858 1.91437 1.87169 1.38590 1.96417 0.93982 0.88860 0.92789 0.88570 0.90937 0.91254 0.87811 0.87173 0.82906 0.81063 0.80767 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.15 71.98 0.73 -4.25 16 2 C 0.09 3.49 5.44 86.38 0.47 3.96 16 3 N -0.44 -22.73 2.56 -635.53 -1.63 -24.35 16 4 C -0.35 -20.02 8.98 84.04 0.75 -19.27 16 5 H 0.06 3.88 7.70 -2.91 -0.02 3.85 16 6 C 0.01 0.50 4.92 84.93 0.42 0.91 16 7 N -0.88 -46.31 11.33 21.66 0.25 -46.06 16 8 Si 0.98 41.86 29.61 68.60 2.03 43.90 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 C 0.43 22.90 7.67 87.66 0.67 23.57 16 13 O -0.62 -39.79 16.32 15.96 0.26 -39.53 16 14 C 0.06 2.52 3.83 71.24 0.27 2.79 16 15 O -0.32 -13.96 9.53 -73.97 -0.71 -14.67 16 16 C 0.07 2.19 6.69 22.53 0.15 2.34 16 17 C -0.19 -4.42 9.04 22.36 0.20 -4.22 16 18 C -0.08 -1.22 10.04 22.26 0.22 -1.00 16 19 C -0.12 -1.80 10.04 22.28 0.22 -1.58 16 20 C -0.11 -2.36 10.02 22.30 0.22 -2.14 16 21 C 0.02 0.76 7.31 22.45 0.16 0.93 16 22 F -0.16 -6.00 17.11 44.97 0.77 -5.23 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 1.57 6.59 -2.39 -0.02 1.56 16 26 H 0.10 4.36 5.34 -2.39 -0.01 4.35 16 27 H 0.07 2.51 6.66 -2.39 -0.02 2.49 16 28 H 0.28 13.50 8.31 -92.70 -0.77 12.73 16 29 H 0.10 3.46 6.93 -2.39 -0.02 3.45 16 30 H 0.11 3.46 6.06 -2.39 -0.01 3.45 16 31 H 0.15 3.00 6.30 -2.91 -0.02 2.98 16 32 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -78.44 296.25 6.61 -71.83 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.13 Total: 12.06 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.50 Total: 2.06 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.38 Total: -70.41 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.44 Total: -54.20 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.77 Total: -5.23 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.90 kcal Total: -78.44 6.61 -71.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.762 kcal (2) G-P(sol) polarization free energy of solvation -78.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds