Wall clock time and date at job start Mon Mar 30 2020 00:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47056 * 2 1 4 4 C 1.36925 * 119.99848 * 81.91867 * 3 2 1 5 5 H 1.07996 * 120.00375 * 167.65520 * 4 3 2 6 6 C 1.39008 * 119.99788 * 347.93098 * 4 3 2 7 7 N 1.31401 * 120.00240 * 14.59006 * 6 4 3 8 8 Si 1.86802 * 120.00175 * 194.58447 * 6 4 3 9 9 H 1.48500 * 109.47046 * 59.99865 * 8 6 4 10 10 H 1.48495 * 109.47127 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46807 * 300.00294 * 8 6 4 12 12 C 1.34775 * 120.00318 * 261.91734 * 3 2 1 13 13 O 1.21641 * 119.99706 * 174.27480 * 12 3 2 14 14 C 1.47345 * 119.99815 * 354.26966 * 12 3 2 15 15 C 1.39876 * 120.11395 * 53.91044 * 14 12 3 16 16 C 1.37599 * 119.92475 * 179.69370 * 15 14 12 17 17 C 1.39112 * 120.16686 * 0.57623 * 16 15 14 18 18 O 1.35710 * 119.88320 * 179.69850 * 17 16 15 19 19 C 1.42898 * 117.00053 * 0.02562 * 18 17 16 20 20 C 1.38856 * 120.23458 * 359.72158 * 17 16 15 21 21 C 1.38038 * 120.06645 * 359.97438 * 20 17 16 22 22 F 1.35103 * 120.08276 * 180.02562 * 21 20 17 23 23 H 1.09002 * 109.46820 * 168.10371 * 1 2 3 24 24 H 1.09002 * 109.46439 * 288.09781 * 1 2 3 25 25 H 1.08991 * 109.47383 * 48.10075 * 1 2 3 26 26 H 1.09005 * 109.46929 * 240.00162 * 2 1 3 27 27 H 1.08999 * 109.47255 * 120.00609 * 2 1 3 28 28 H 0.96994 * 119.99826 * 180.02562 * 7 6 4 29 29 H 1.07993 * 120.03603 * 359.96966 * 15 14 12 30 30 H 1.08004 * 119.91509 * 180.29726 * 16 15 14 31 31 H 1.09002 * 109.47418 * 179.97438 * 19 18 17 32 32 H 1.09004 * 109.47154 * 300.00121 * 19 18 17 33 33 H 1.09006 * 109.47038 * 60.00358 * 19 18 17 34 34 H 1.07993 * 119.96820 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0893 2.0822 1.1741 5 1 2.6283 3.0173 1.2130 6 6 1.4726 1.5874 2.3173 7 7 1.0734 0.3362 2.3594 8 14 1.2113 2.7012 3.7941 9 1 0.3637 3.8551 3.4000 10 1 0.5384 1.9387 4.8762 11 1 2.5248 3.1950 4.2801 12 6 2.3977 1.9619 -1.1556 13 8 2.7039 3.1390 -1.1728 14 6 2.4416 1.1708 -2.3979 15 6 1.3133 0.4576 -2.8160 16 6 1.3567 -0.2748 -3.9801 17 6 2.5237 -0.3174 -4.7361 18 8 2.5619 -1.0465 -5.8801 19 6 1.3688 -1.7427 -6.2459 20 6 3.6497 0.3830 -4.3241 21 6 3.6149 1.1259 -3.1612 22 9 4.7101 1.8079 -2.7604 23 1 -0.3633 -1.0056 -0.2119 24 1 -0.3632 0.3193 0.9769 25 1 -0.3634 0.6862 -0.7648 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.6427 -0.0089 3.1570 29 1 0.4078 0.4854 -2.2282 30 1 0.4839 -0.8215 -4.3053 31 1 1.5350 -2.2839 -7.1774 32 1 1.1034 -2.4476 -5.4580 33 1 0.5578 -1.0271 -6.3817 34 1 4.5532 0.3472 -4.9146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:04 Heat of formation + Delta-G solvation = -62.850705 kcal Electronic energy + Delta-G solvation = -20646.310396 eV Core-core repulsion = 17267.587905 eV Total energy + Delta-G solvation = -3378.722490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.45113 -40.07783 -38.73021 -36.58363 -35.15575 -31.96004 -30.80237 -29.74501 -29.47424 -27.47405 -25.13741 -22.96827 -22.40115 -21.92188 -19.53344 -18.31106 -17.08906 -16.62853 -16.46367 -15.87182 -15.70189 -15.15332 -14.94560 -14.59393 -14.14656 -14.01296 -13.55646 -13.27652 -12.73625 -12.48877 -12.30624 -12.12992 -11.97828 -11.68731 -11.43572 -11.10333 -10.90105 -10.84214 -10.72791 -10.36959 -10.13569 -9.94587 -8.88637 -8.66000 -8.56122 -7.96347 -7.75789 -6.27623 -3.86471 1.30932 1.40072 3.11486 3.15249 3.22280 3.27619 3.57752 3.98046 4.11982 4.63923 4.80758 4.81434 5.01506 5.03290 5.06046 5.14627 5.31773 5.47540 5.49240 5.59733 6.16359 6.17950 6.22473 6.32081 6.54420 6.62358 6.67004 6.72476 6.84940 7.33575 7.34924 7.56619 7.68378 8.04950 8.49177 9.11823 9.37635 9.92970 10.58230 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.005814 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.489803 B = 4814.427890 C = 5491.589459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.429 5.429 4 C -0.293 4.293 5 H 0.104 0.896 6 C 0.027 3.973 7 N -0.871 5.871 8 Si 0.930 3.070 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.476 3.524 13 O -0.583 6.583 14 C -0.157 4.157 15 C -0.034 4.034 16 C -0.224 4.224 17 C 0.153 3.847 18 O -0.315 6.315 19 C 0.027 3.973 20 C -0.198 4.198 21 C 0.171 3.829 22 F -0.122 7.122 23 H 0.036 0.964 24 H 0.091 0.909 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.125 0.875 28 H 0.267 0.733 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -7.464 -11.177 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.145 5.145 4 C -0.421 4.421 5 H 0.122 0.878 6 C -0.174 4.174 7 N -0.512 5.512 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.265 3.735 13 O -0.469 6.469 14 C -0.162 4.162 15 C -0.053 4.053 16 C -0.243 4.243 17 C 0.107 3.893 18 O -0.229 6.229 19 C -0.068 4.068 20 C -0.217 4.217 21 C 0.150 3.850 22 F -0.100 7.100 23 H 0.055 0.945 24 H 0.110 0.890 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.142 0.858 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.026 -7.027 -11.099 13.292 hybrid contribution -0.322 0.318 0.748 0.874 sum -2.348 -6.710 -10.351 12.557 Atomic orbital electron populations 1.22425 0.97033 0.98296 1.03118 1.21951 0.94417 0.83494 1.01893 1.43752 1.53569 1.11874 1.05349 1.19739 1.31280 1.05394 0.85660 0.87827 1.25288 0.96418 0.96313 0.99420 1.69989 1.39800 1.12428 1.28973 0.85926 0.78958 0.79791 0.79654 1.19859 1.20885 1.19808 1.17512 0.86190 0.87127 0.82708 1.90644 1.55159 1.15610 1.85478 1.20263 0.93786 1.02917 0.99197 1.21426 0.97990 0.91670 0.94192 1.21155 0.98019 1.06905 0.98230 1.18657 0.93384 0.91407 0.85864 1.85991 1.37722 1.60872 1.38279 1.23081 0.86490 0.96058 1.01184 1.20029 0.99524 1.03706 0.98490 1.17245 0.82931 0.92076 0.92713 1.91539 1.51238 1.77098 1.90137 0.94529 0.89036 0.95629 0.94852 0.85752 0.92149 0.83553 0.84867 0.88321 0.92359 0.92460 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.82 37.16 0.33 -2.76 16 2 C 0.11 2.37 4.91 -4.04 -0.02 2.35 16 3 N -0.43 -11.13 2.64 -116.06 -0.31 -11.44 16 4 C -0.29 -8.09 9.41 -14.99 -0.14 -8.23 16 5 H 0.10 3.02 7.31 -52.49 -0.38 2.64 16 6 C 0.03 0.69 5.14 -17.45 -0.09 0.60 16 7 N -0.87 -21.45 7.42 55.50 0.41 -21.03 16 8 Si 0.93 20.33 29.58 -169.99 -5.03 15.30 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.48 12.39 6.83 -12.56 -0.09 12.30 16 13 O -0.58 -17.26 16.50 5.24 0.09 -17.17 16 14 C -0.16 -3.34 4.78 -104.90 -0.50 -3.84 16 15 C -0.03 -0.60 7.60 -39.20 -0.30 -0.90 16 16 C -0.22 -3.21 9.01 -39.49 -0.36 -3.56 16 17 C 0.15 2.24 6.69 -39.03 -0.26 1.98 16 18 O -0.32 -3.97 10.48 -18.83 -0.20 -4.16 16 19 C 0.03 0.22 9.80 101.05 0.99 1.21 16 20 C -0.20 -3.21 9.95 -39.43 -0.39 -3.60 16 21 C 0.17 3.38 7.27 -38.98 -0.28 3.10 16 22 F -0.12 -2.62 16.65 2.25 0.04 -2.58 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 2.09 5.71 -51.93 -0.30 1.79 16 25 H 0.02 0.50 6.17 -51.93 -0.32 0.18 16 26 H 0.03 0.68 5.43 -51.93 -0.28 0.40 16 27 H 0.13 3.04 5.81 -51.93 -0.30 2.74 16 28 H 0.27 6.25 8.31 -40.82 -0.34 5.92 16 29 H 0.15 2.52 4.59 -52.49 -0.24 2.28 16 30 H 0.13 1.45 6.27 -52.48 -0.33 1.12 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 33 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -30.76 284.05 -5.18 -35.93 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.35 Total: 2.20 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.11 Total: -1.33 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.11 Total: -32.47 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.11 Total: -21.33 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.76 -5.18 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.917 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds