Wall clock time and date at job start Mon Mar 30 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47056 * 2 1 4 4 C 1.36925 * 119.99848 * 81.91867 * 3 2 1 5 5 H 1.07996 * 120.00375 * 167.65520 * 4 3 2 6 6 C 1.39008 * 119.99788 * 347.93098 * 4 3 2 7 7 N 1.31401 * 120.00240 * 14.59006 * 6 4 3 8 8 Si 1.86802 * 120.00175 * 194.58447 * 6 4 3 9 9 H 1.48500 * 109.47046 * 59.99865 * 8 6 4 10 10 H 1.48495 * 109.47127 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46807 * 300.00294 * 8 6 4 12 12 C 1.34775 * 120.00318 * 261.91734 * 3 2 1 13 13 O 1.21641 * 119.99706 * 174.27480 * 12 3 2 14 14 C 1.47345 * 119.99815 * 354.26966 * 12 3 2 15 15 C 1.39876 * 120.11395 * 53.91044 * 14 12 3 16 16 C 1.37599 * 119.92475 * 179.69370 * 15 14 12 17 17 C 1.39112 * 120.16686 * 0.57623 * 16 15 14 18 18 O 1.35710 * 119.88320 * 179.69850 * 17 16 15 19 19 C 1.42898 * 117.00053 * 0.02562 * 18 17 16 20 20 C 1.38856 * 120.23458 * 359.72158 * 17 16 15 21 21 C 1.38038 * 120.06645 * 359.97438 * 20 17 16 22 22 F 1.35103 * 120.08276 * 180.02562 * 21 20 17 23 23 H 1.09002 * 109.46820 * 168.10371 * 1 2 3 24 24 H 1.09002 * 109.46439 * 288.09781 * 1 2 3 25 25 H 1.08991 * 109.47383 * 48.10075 * 1 2 3 26 26 H 1.09005 * 109.46929 * 240.00162 * 2 1 3 27 27 H 1.08999 * 109.47255 * 120.00609 * 2 1 3 28 28 H 0.96994 * 119.99826 * 180.02562 * 7 6 4 29 29 H 1.07993 * 120.03603 * 359.96966 * 15 14 12 30 30 H 1.08004 * 119.91509 * 180.29726 * 16 15 14 31 31 H 1.09002 * 109.47418 * 179.97438 * 19 18 17 32 32 H 1.09004 * 109.47154 * 300.00121 * 19 18 17 33 33 H 1.09006 * 109.47038 * 60.00358 * 19 18 17 34 34 H 1.07993 * 119.96820 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0893 2.0822 1.1741 5 1 2.6283 3.0173 1.2130 6 6 1.4726 1.5874 2.3173 7 7 1.0734 0.3362 2.3594 8 14 1.2113 2.7012 3.7941 9 1 0.3637 3.8551 3.4000 10 1 0.5384 1.9387 4.8762 11 1 2.5248 3.1950 4.2801 12 6 2.3977 1.9619 -1.1556 13 8 2.7039 3.1390 -1.1728 14 6 2.4416 1.1708 -2.3979 15 6 1.3133 0.4576 -2.8160 16 6 1.3567 -0.2748 -3.9801 17 6 2.5237 -0.3174 -4.7361 18 8 2.5619 -1.0465 -5.8801 19 6 1.3688 -1.7427 -6.2459 20 6 3.6497 0.3830 -4.3241 21 6 3.6149 1.1259 -3.1612 22 9 4.7101 1.8079 -2.7604 23 1 -0.3633 -1.0056 -0.2119 24 1 -0.3632 0.3193 0.9769 25 1 -0.3634 0.6862 -0.7648 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.6427 -0.0089 3.1570 29 1 0.4078 0.4854 -2.2282 30 1 0.4839 -0.8215 -4.3053 31 1 1.5350 -2.2839 -7.1774 32 1 1.1034 -2.4476 -5.4580 33 1 0.5578 -1.0271 -6.3817 34 1 4.5532 0.3472 -4.9146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:03 Heat of formation + Delta-G solvation = -82.451698 kcal Electronic energy + Delta-G solvation = -20647.160359 eV Core-core repulsion = 17267.587905 eV Total energy + Delta-G solvation = -3379.572453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.01017 -41.36694 -40.35583 -37.92103 -37.14102 -33.84915 -32.22734 -31.21648 -31.11699 -28.34122 -26.97452 -24.41337 -23.96738 -23.45561 -21.22856 -19.47908 -18.98246 -18.31350 -17.90442 -17.05981 -16.95728 -16.83377 -16.39938 -16.00293 -15.82937 -15.58210 -15.36018 -14.83159 -14.35765 -13.84365 -13.64039 -13.46653 -13.34421 -13.28994 -13.01363 -12.81245 -12.68936 -12.20654 -12.09514 -12.05735 -11.80252 -11.62419 -10.79719 -10.54676 -9.99567 -9.71682 -9.29623 -8.23245 -5.92351 -0.06848 0.09517 1.36713 1.42225 1.51626 1.91183 2.12817 2.24491 2.49665 3.01418 3.07323 3.31773 3.63711 3.85933 3.93300 4.18318 4.26432 4.45985 4.48289 4.49830 4.77785 4.82424 4.84353 4.92773 4.99189 5.10936 5.14769 5.21315 5.38392 5.51752 5.62884 5.91181 6.06668 6.29972 6.52175 7.11735 7.41672 7.97254 8.59705 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.005814 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.489803 B = 4814.427890 C = 5491.589459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.108 3.892 3 N -0.436 5.436 4 C -0.345 4.345 5 H 0.069 0.931 6 C 0.008 3.992 7 N -0.864 5.864 8 Si 0.988 3.012 9 H -0.279 1.279 10 H -0.261 1.261 11 H -0.276 1.276 12 C 0.461 3.539 13 O -0.641 6.641 14 C -0.192 4.192 15 C -0.033 4.033 16 C -0.203 4.203 17 C 0.172 3.828 18 O -0.319 6.319 19 C 0.011 3.989 20 C -0.193 4.193 21 C 0.146 3.854 22 F -0.144 7.144 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.276 0.724 29 H 0.149 0.851 30 H 0.179 0.821 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -10.181 -12.701 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 N -0.151 5.151 4 C -0.473 4.473 5 H 0.087 0.913 6 C -0.195 4.195 7 N -0.503 5.503 8 Si 0.811 3.189 9 H -0.205 1.205 10 H -0.185 1.185 11 H -0.201 1.201 12 C 0.251 3.749 13 O -0.531 6.531 14 C -0.196 4.196 15 C -0.051 4.051 16 C -0.221 4.221 17 C 0.125 3.875 18 O -0.232 6.232 19 C -0.083 4.083 20 C -0.212 4.212 21 C 0.125 3.875 22 F -0.122 7.122 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.196 0.804 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.897 -9.822 -12.631 16.468 hybrid contribution 0.205 0.999 1.087 1.491 sum -3.692 -8.823 -11.544 14.991 Atomic orbital electron populations 1.22255 0.95197 1.00514 1.01846 1.21990 0.95830 0.81700 1.01875 1.43972 1.53304 1.12903 1.04970 1.19591 1.34348 1.05735 0.87625 0.91275 1.25906 0.95106 0.97551 1.00896 1.70073 1.37939 1.12505 1.29760 0.85093 0.78579 0.78137 0.77047 1.20462 1.18514 1.20113 1.18296 0.85317 0.87038 0.84230 1.90567 1.57537 1.18233 1.86721 1.20004 0.96186 1.05318 0.98132 1.21440 0.96600 0.91600 0.95490 1.21509 0.99298 1.05188 0.96148 1.18696 0.92580 0.90050 0.86166 1.86026 1.40222 1.60277 1.36631 1.23540 0.85283 0.96507 1.02928 1.20176 1.01188 1.02784 0.97096 1.17559 0.82247 0.93483 0.94189 1.91474 1.52200 1.77942 1.90628 0.90848 0.91515 0.95166 0.92749 0.87778 0.91266 0.83324 0.80392 0.85663 0.90892 0.91038 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.82 71.98 0.63 -4.91 16 2 C 0.11 4.88 4.91 86.38 0.42 5.30 16 3 N -0.44 -23.65 2.64 -639.34 -1.69 -25.33 16 4 C -0.35 -20.12 9.41 84.08 0.79 -19.33 16 5 H 0.07 4.39 7.31 -2.91 -0.02 4.37 16 6 C 0.01 0.42 5.14 84.94 0.44 0.86 16 7 N -0.86 -42.30 7.42 21.68 0.16 -42.14 16 8 Si 0.99 42.11 29.58 68.60 2.03 44.14 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.46 25.36 6.83 86.64 0.59 25.95 16 13 O -0.64 -40.87 16.50 -4.16 -0.07 -40.94 16 14 C -0.19 -8.34 4.78 -20.04 -0.10 -8.43 16 15 C -0.03 -1.09 7.60 22.52 0.17 -0.92 16 16 C -0.20 -4.97 9.01 22.33 0.20 -4.77 16 17 C 0.17 4.42 6.69 22.63 0.15 4.57 16 18 O -0.32 -6.51 10.48 -90.31 -0.95 -7.46 16 19 C 0.01 0.12 9.80 113.37 1.11 1.23 16 20 C -0.19 -5.95 9.95 22.37 0.22 -5.72 16 21 C 0.15 5.88 7.27 22.66 0.16 6.05 16 22 F -0.14 -6.56 16.65 44.97 0.75 -5.81 16 23 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.07 2.98 5.71 -2.39 -0.01 2.97 16 25 H 0.03 1.15 6.17 -2.39 -0.01 1.13 16 26 H 0.05 2.20 5.43 -2.38 -0.01 2.18 16 27 H 0.10 5.12 5.81 -2.39 -0.01 5.11 16 28 H 0.28 12.54 8.31 -92.71 -0.77 11.77 16 29 H 0.15 4.83 4.59 -2.91 -0.01 4.82 16 30 H 0.18 2.75 6.27 -2.91 -0.02 2.73 16 31 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.63 7.65 -2.38 -0.02 0.61 16 33 H 0.07 0.62 7.65 -2.38 -0.02 0.61 16 34 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -72.35 284.05 6.19 -66.17 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.14 Total: 11.50 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 4.81 Total: -0.12 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.53 Total: -67.47 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.02 Total: -48.40 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.75 Total: -5.81 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.35 6.19 -66.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.286 kcal (2) G-P(sol) polarization free energy of solvation -72.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds