Wall clock time and date at job start Mon Mar 30 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47056 * 2 1 4 4 C 1.37100 * 120.00097 * 262.80051 * 3 2 1 5 5 H 1.07993 * 119.99832 * 142.17626 * 4 3 2 6 6 C 1.38953 * 119.99641 * 322.17075 * 4 3 2 7 7 N 1.31411 * 119.99492 * 157.38508 * 6 4 3 8 8 Si 1.86793 * 120.00284 * 337.38729 * 6 4 3 9 9 H 1.48500 * 109.47462 * 95.20882 * 8 6 4 10 10 H 1.48502 * 109.46906 * 215.21143 * 8 6 4 11 11 H 1.48502 * 109.47114 * 335.20696 * 8 6 4 12 12 C 1.34777 * 119.99915 * 82.80182 * 3 2 1 13 13 O 1.21291 * 120.00222 * 180.02562 * 12 3 2 14 14 C 1.50696 * 120.00065 * 0.27332 * 12 3 2 15 15 O 1.42899 * 109.47288 * 179.72834 * 14 12 3 16 16 C 1.35901 * 117.00466 * 180.02562 * 15 14 12 17 17 C 1.38773 * 120.03873 * 359.72135 * 16 15 14 18 18 C 1.38132 * 119.99623 * 179.74469 * 17 16 15 19 19 C 1.38252 * 120.07780 * 0.53468 * 18 17 16 20 20 C 1.38484 * 120.08569 * 359.73920 * 19 18 17 21 21 F 1.35090 * 119.99845 * 180.02562 * 20 19 18 22 22 C 1.38390 * 120.00046 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.46836 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46774 * 299.99899 * 1 2 3 25 25 H 1.08994 * 109.46848 * 59.99853 * 1 2 3 26 26 H 1.09001 * 109.47444 * 239.99813 * 2 1 3 27 27 H 1.09006 * 109.47248 * 119.99937 * 2 1 3 28 28 H 0.96995 * 119.99821 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47189 * 299.72674 * 14 12 3 30 30 H 1.09007 * 109.47172 * 59.72735 * 14 12 3 31 31 H 1.08006 * 120.00334 * 0.02562 * 17 16 15 32 32 H 1.08001 * 119.96208 * 180.27532 * 18 17 16 33 33 H 1.07996 * 119.96298 * 179.76941 * 19 18 17 34 34 H 1.07997 * 120.03656 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3871 1.9779 -1.1779 5 1 2.1655 3.0212 -1.3473 6 6 3.0461 1.2403 -2.1538 7 7 3.0114 1.6310 -3.4080 8 14 3.9813 -0.3066 -1.6830 9 1 3.1101 -1.4923 -1.8843 10 1 5.1918 -0.4316 -2.5341 11 1 4.3854 -0.2258 -0.2563 12 6 2.1051 2.0653 1.1580 13 8 2.5089 3.2090 1.1580 14 6 1.7056 1.4074 2.4536 15 8 1.8916 2.3265 3.5318 16 6 1.5762 1.8871 4.7786 17 6 1.0919 0.5993 4.9594 18 6 0.7767 0.1518 6.2277 19 6 0.9325 0.9893 7.3166 20 6 1.4101 2.2770 7.1392 21 9 1.5621 3.0937 8.2045 22 6 1.7326 2.7269 5.8708 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.4711 1.1160 -4.0893 29 1 0.6571 1.1133 2.4036 30 1 2.3231 0.5243 2.6182 31 1 0.9659 -0.0547 4.1092 32 1 0.4040 -0.8521 6.3683 33 1 0.6819 0.6388 8.3068 34 1 2.1055 3.7308 5.7319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:51 Heat of formation + Delta-G solvation = -96.327815 kcal Electronic energy + Delta-G solvation = -19890.090826 eV Core-core repulsion = 16509.916659 eV Total energy + Delta-G solvation = -3380.174167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97470 -41.45122 -40.33945 -38.18168 -37.05389 -34.41712 -32.10381 -31.40395 -30.92161 -29.69803 -26.49993 -24.49891 -23.93884 -23.29476 -20.93354 -19.71392 -18.89329 -18.02193 -17.77766 -17.45053 -17.24681 -17.03157 -16.66667 -16.59490 -15.87052 -15.57456 -14.97873 -14.79867 -14.67921 -14.43579 -14.10588 -13.89769 -13.63689 -13.24040 -13.02823 -12.78464 -12.69943 -12.53682 -12.12126 -12.06324 -11.94447 -11.57395 -11.08491 -10.47633 -9.91992 -9.79848 -9.33436 -8.54544 -6.18574 0.10871 0.28159 1.18596 1.32142 1.45136 1.70164 1.79512 2.16368 2.58988 2.75806 2.92687 3.37430 3.60164 3.81754 3.87028 4.01984 4.05795 4.10644 4.16990 4.30371 4.41488 4.42320 4.51901 4.95150 4.99240 5.01421 5.09562 5.23240 5.34007 5.39157 5.50024 5.71598 5.99636 6.25391 6.52909 6.88093 7.20701 7.75646 8.62594 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034722 B = 0.004416 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.204744 B = 6338.349048 C = 6621.472167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 N -0.466 5.466 4 C -0.338 4.338 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.230 1.230 10 H -0.290 1.290 11 H -0.256 1.256 12 C 0.451 3.549 13 O -0.609 6.609 14 C 0.057 3.943 15 O -0.320 6.320 16 C 0.139 3.861 17 C -0.218 4.218 18 C -0.037 4.037 19 C -0.188 4.188 20 C 0.123 3.877 21 F -0.143 7.143 22 C -0.215 4.215 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.282 0.718 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.162 0.838 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 -13.138 18.777 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.053 4.053 3 N -0.189 5.189 4 C -0.466 4.466 5 H 0.058 0.942 6 C -0.187 4.187 7 N -0.544 5.544 8 Si 0.769 3.231 9 H -0.154 1.154 10 H -0.216 1.216 11 H -0.180 1.180 12 C 0.241 3.759 13 O -0.493 6.493 14 C -0.021 4.021 15 O -0.233 6.233 16 C 0.093 3.907 17 C -0.237 4.237 18 C -0.055 4.055 19 C -0.207 4.207 20 C 0.104 3.896 21 F -0.121 7.121 22 C -0.234 4.234 23 H 0.121 0.879 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.179 0.821 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.206 -12.374 18.527 23.128 hybrid contribution 0.724 0.593 -0.562 1.091 sum -5.482 -11.781 17.965 22.172 Atomic orbital electron populations 1.22137 0.93600 1.03896 1.02074 1.22268 0.97033 0.82441 1.03520 1.43799 1.57216 1.13454 1.04424 1.18592 1.39381 0.96818 0.91830 0.94203 1.26185 0.96042 1.02576 0.93911 1.69871 1.40696 1.42568 1.01236 0.85864 0.78687 0.79097 0.79434 1.15378 1.21641 1.18011 1.20826 0.81896 0.87641 0.85584 1.90573 1.50742 1.20867 1.87097 1.22726 1.04555 0.91951 0.82856 1.86155 1.81652 1.41905 1.13607 1.18990 0.94442 0.93646 0.83648 1.21740 1.06171 0.94634 1.01111 1.21263 0.93902 1.00692 0.89654 1.21415 1.04978 0.91763 1.02545 1.17461 1.00388 0.89678 0.82065 1.91484 1.93490 1.72713 1.54461 1.20345 1.10424 1.02068 0.90584 0.87873 0.91516 0.94358 0.91351 0.87520 0.90841 0.86154 0.86295 0.82057 0.80357 0.81943 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.11 71.98 0.73 -3.51 16 2 C 0.07 2.29 4.45 86.38 0.38 2.67 16 3 N -0.47 -21.75 2.19 -635.53 -1.39 -23.14 16 4 C -0.34 -19.74 9.35 84.04 0.79 -18.95 16 5 H 0.04 2.77 7.92 -2.91 -0.02 2.75 16 6 C 0.02 0.86 5.25 84.93 0.45 1.31 16 7 N -0.91 -53.18 13.96 21.66 0.30 -52.88 16 8 Si 0.95 39.77 25.10 68.60 1.72 41.49 16 9 H -0.23 -8.05 6.68 99.48 0.66 -7.39 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 12 C 0.45 21.10 7.64 87.66 0.67 21.77 16 13 O -0.61 -35.96 16.37 15.97 0.26 -35.69 16 14 C 0.06 1.78 3.83 71.23 0.27 2.05 16 15 O -0.32 -11.47 9.67 -73.40 -0.71 -12.18 16 16 C 0.14 3.83 6.68 22.50 0.15 3.98 16 17 C -0.22 -4.05 9.04 22.37 0.20 -3.84 16 18 C -0.04 -0.51 10.04 22.25 0.22 -0.28 16 19 C -0.19 -3.06 10.02 22.33 0.22 -2.84 16 20 C 0.12 2.85 7.30 22.36 0.16 3.01 16 21 F -0.14 -3.46 17.27 44.97 0.78 -2.68 16 22 C -0.21 -5.95 9.97 22.41 0.22 -5.72 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 1.55 6.38 -2.38 -0.02 1.54 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 2.44 3.72 -2.39 -0.01 2.43 16 27 H 0.11 2.52 6.74 -2.38 -0.02 2.50 16 28 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.12 2.85 5.86 -2.39 -0.01 2.83 16 30 H 0.12 2.83 6.95 -2.38 -0.02 2.81 16 31 H 0.16 2.10 6.30 -2.91 -0.02 2.08 16 32 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -80.02 291.73 6.52 -73.49 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.09 Total: 11.94 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.47 Total: -0.36 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.09 Total: -76.01 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.45 Total: -47.87 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.72 Total: 41.49 kcal Total: -80.02 6.52 -73.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.834 kcal (2) G-P(sol) polarization free energy of solvation -80.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds