Wall clock time and date at job start Mon Mar 30 2020 00:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99726 * 2 1 4 4 O 1.20823 * 120.00298 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99888 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46855 * 60.00223 * 5 3 2 7 7 C 1.50700 * 109.47196 * 300.00494 * 5 3 2 8 8 C 1.38218 * 120.01328 * 344.87646 * 7 5 3 9 9 C 1.38229 * 120.02738 * 180.02562 * 8 7 5 10 10 C 1.38269 * 120.04899 * 0.02562 * 9 8 7 11 11 C 1.38175 * 120.02415 * 359.97438 * 10 9 8 12 12 C 1.38443 * 120.01146 * 164.90273 * 7 5 3 13 13 F 1.35092 * 120.02690 * 359.97438 * 12 7 5 14 14 N 1.46499 * 109.47060 * 180.02562 * 5 3 2 15 15 C 1.46494 * 120.00144 * 64.20042 * 14 5 3 16 16 C 1.36938 * 119.99800 * 244.19474 * 14 5 3 17 17 H 1.08000 * 119.99988 * 29.55817 * 16 14 5 18 18 C 1.38817 * 119.99960 * 209.55741 * 16 14 5 19 19 N 1.31613 * 120.00106 * 7.75830 * 18 16 14 20 20 Si 1.86797 * 119.99959 * 187.76454 * 18 16 14 21 21 H 1.48497 * 109.47526 * 89.99538 * 20 18 16 22 22 H 1.48506 * 109.47074 * 209.99971 * 20 18 16 23 23 H 1.48504 * 109.47076 * 329.99472 * 20 18 16 24 24 H 1.08998 * 109.47631 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.47309 * 59.99772 * 1 2 3 26 26 H 1.09004 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.98525 * 0.04760 * 8 7 5 28 28 H 1.07991 * 119.97336 * 180.02562 * 9 8 7 29 29 H 1.07993 * 119.98605 * 179.71917 * 10 9 8 30 30 H 1.08004 * 120.01173 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47698 * 85.87783 * 15 14 5 32 32 H 1.09003 * 109.47198 * 205.87858 * 15 14 5 33 33 H 1.09000 * 109.47266 * 325.87618 * 15 14 5 34 34 H 0.96996 * 120.00376 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1046 0.5920 1.2313 8 6 3.2595 0.2994 2.2852 9 6 3.7532 -0.3266 3.4145 10 6 5.0928 -0.6603 3.4914 11 6 5.9395 -0.3688 2.4391 12 6 5.4460 0.2578 1.3070 13 9 6.2729 0.5433 0.2776 14 7 3.9816 2.6798 0.0011 15 6 3.6593 3.5385 1.1434 16 6 4.6711 3.1903 -1.0662 17 1 4.5150 2.7836 -2.0545 18 6 5.5709 4.2305 -0.8779 19 7 5.8761 4.6242 0.3403 20 14 6.3483 5.0716 -2.3536 21 1 5.4986 6.2134 -2.7771 22 1 7.6983 5.5689 -1.9855 23 1 6.4662 4.1009 -3.4713 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2130 0.5597 2.2262 28 1 3.0920 -0.5551 4.2372 29 1 5.4782 -1.1453 4.3760 30 1 6.9859 -0.6292 2.4996 31 1 4.4305 3.4330 1.9063 32 1 3.6123 4.5770 0.8154 33 1 2.6952 3.2446 1.5583 34 1 6.5044 5.3513 0.4719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072596797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:44 Heat of formation + Delta-G solvation = -70.770421 kcal Electronic energy + Delta-G solvation = -21155.064402 eV Core-core repulsion = 17775.998487 eV Total energy + Delta-G solvation = -3379.065915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.10593 -40.12341 -38.40773 -36.28850 -35.10381 -32.38154 -30.36185 -29.89794 -27.98065 -26.37469 -25.74114 -22.72556 -22.22116 -21.50115 -19.65367 -17.34629 -17.19608 -16.66355 -16.21776 -15.83406 -15.37840 -15.21503 -14.86224 -14.60984 -13.82523 -13.65540 -13.26871 -13.20742 -12.73624 -12.48575 -12.14439 -11.90439 -11.78421 -11.56838 -11.11704 -10.98267 -10.85037 -10.61154 -10.52341 -10.31109 -10.14451 -10.02994 -9.67304 -8.64327 -8.54560 -8.15380 -6.87434 -5.84543 -3.35978 1.59558 1.63830 2.84969 3.20460 3.37192 3.42435 3.44566 3.98494 4.45551 4.82992 5.08296 5.10965 5.24759 5.33322 5.36500 5.40457 5.47995 5.51714 5.64100 5.73050 5.84072 6.05122 6.21834 6.47066 6.57048 6.70012 6.77112 6.82957 6.94209 7.33013 7.37532 7.65372 7.74720 8.24328 8.46395 9.10038 9.66459 10.17264 11.21193 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.008882 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.266621 B = 3151.837143 C = 4196.017744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.438 3.562 4 O -0.492 6.492 5 C 0.220 3.780 6 H 0.112 0.888 7 C -0.111 4.111 8 C -0.083 4.083 9 C -0.137 4.137 10 C -0.101 4.101 11 C -0.162 4.162 12 C 0.135 3.865 13 F -0.123 7.123 14 N -0.551 5.551 15 C 0.164 3.836 16 C -0.267 4.267 17 H 0.070 0.930 18 C 0.018 3.982 19 N -0.894 5.894 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.005 0.995 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 -11.421 4.632 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.277 3.723 4 O -0.377 6.377 5 C 0.107 3.893 6 H 0.129 0.871 7 C -0.115 4.115 8 C -0.102 4.102 9 C -0.155 4.155 10 C -0.120 4.120 11 C -0.181 4.181 12 C 0.115 3.885 13 F -0.101 7.101 14 N -0.269 5.269 15 C 0.020 3.980 16 C -0.396 4.396 17 H 0.088 0.912 18 C -0.183 4.183 19 N -0.535 5.535 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.201 1.201 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.023 0.977 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.012 -10.861 4.626 12.825 hybrid contribution 0.332 0.728 -0.806 1.135 sum -4.680 -10.133 3.821 11.798 Atomic orbital electron populations 1.23108 0.78447 1.02658 1.01964 1.86657 1.21937 1.35102 1.84708 1.25994 0.93674 0.80882 0.71751 1.90599 1.66738 1.36347 1.44005 1.18752 0.85325 0.89040 0.96134 0.87055 1.20347 0.93048 0.99323 0.98754 1.20838 0.98918 0.97684 0.92784 1.20994 0.95643 1.00861 0.98020 1.20827 0.93358 0.99959 0.97813 1.21058 1.00767 1.02782 0.93482 1.17374 0.87429 0.97894 0.85807 1.91558 1.70911 1.91073 1.56579 1.43790 1.61597 1.01252 1.20210 1.20818 0.93823 0.94746 0.88595 1.19176 1.17292 1.16442 0.86694 0.91243 1.25177 0.96524 0.99990 0.96573 1.70050 1.35148 1.29111 1.19227 0.86158 0.78439 0.79525 0.81804 1.21219 1.21453 1.20129 0.92581 0.92497 0.88922 0.86447 0.86078 0.85763 0.85261 0.95965 0.92472 0.97684 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -6.21 9.63 -39.26 -0.38 -6.59 16 3 C 0.44 8.94 5.44 36.01 0.20 9.14 16 4 O -0.49 -11.34 14.54 -18.75 -0.27 -11.61 16 5 C 0.22 4.82 2.54 -70.24 -0.18 4.64 16 6 H 0.11 2.39 7.83 -51.93 -0.41 1.99 16 7 C -0.11 -2.19 4.69 -104.55 -0.49 -2.68 16 8 C -0.08 -1.42 8.83 -39.59 -0.35 -1.77 16 9 C -0.14 -1.95 10.05 -39.57 -0.40 -2.35 16 10 C -0.10 -1.39 10.04 -39.59 -0.40 -1.79 16 11 C -0.16 -2.60 10.03 -39.51 -0.40 -2.99 16 12 C 0.14 2.65 7.25 -39.42 -0.29 2.37 16 13 F -0.12 -2.71 16.75 2.25 0.04 -2.67 16 14 N -0.55 -14.21 2.52 -176.16 -0.44 -14.66 16 15 C 0.16 4.27 7.87 59.84 0.47 4.74 16 16 C -0.27 -7.40 9.51 -15.06 -0.14 -7.54 16 17 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 18 C 0.02 0.50 5.13 -17.43 -0.09 0.41 16 19 N -0.89 -25.92 10.90 55.49 0.61 -25.32 16 20 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 1.97 6.30 -52.49 -0.33 1.64 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.02 0.60 7.75 -51.93 -0.40 0.20 16 32 H 0.06 1.60 7.04 -51.93 -0.37 1.24 16 33 H 0.00 0.12 6.56 -51.93 -0.34 -0.22 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -31.61 297.36 -5.92 -37.53 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.93 Total: -1.72 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.99 Total: 3.66 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.16 Total: -39.98 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.65 Total: -18.20 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.61 -5.92 -37.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.240 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds