Wall clock time and date at job start Mon Mar 30 2020 00:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99726 * 2 1 4 4 O 1.20823 * 120.00298 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99888 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46855 * 60.00223 * 5 3 2 7 7 C 1.50700 * 109.47196 * 300.00494 * 5 3 2 8 8 C 1.38218 * 120.01328 * 344.87646 * 7 5 3 9 9 C 1.38229 * 120.02738 * 180.02562 * 8 7 5 10 10 C 1.38269 * 120.04899 * 0.02562 * 9 8 7 11 11 C 1.38175 * 120.02415 * 359.97438 * 10 9 8 12 12 C 1.38443 * 120.01146 * 164.90273 * 7 5 3 13 13 F 1.35092 * 120.02690 * 359.97438 * 12 7 5 14 14 N 1.46499 * 109.47060 * 180.02562 * 5 3 2 15 15 C 1.46494 * 120.00144 * 64.20042 * 14 5 3 16 16 C 1.36938 * 119.99800 * 244.19474 * 14 5 3 17 17 H 1.08000 * 119.99988 * 29.55817 * 16 14 5 18 18 C 1.38817 * 119.99960 * 209.55741 * 16 14 5 19 19 N 1.31613 * 120.00106 * 7.75830 * 18 16 14 20 20 Si 1.86797 * 119.99959 * 187.76454 * 18 16 14 21 21 H 1.48497 * 109.47526 * 89.99538 * 20 18 16 22 22 H 1.48506 * 109.47074 * 209.99971 * 20 18 16 23 23 H 1.48504 * 109.47076 * 329.99472 * 20 18 16 24 24 H 1.08998 * 109.47631 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.47309 * 59.99772 * 1 2 3 26 26 H 1.09004 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.98525 * 0.04760 * 8 7 5 28 28 H 1.07991 * 119.97336 * 180.02562 * 9 8 7 29 29 H 1.07993 * 119.98605 * 179.71917 * 10 9 8 30 30 H 1.08004 * 120.01173 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47698 * 85.87783 * 15 14 5 32 32 H 1.09003 * 109.47198 * 205.87858 * 15 14 5 33 33 H 1.09000 * 109.47266 * 325.87618 * 15 14 5 34 34 H 0.96996 * 120.00376 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1046 0.5920 1.2313 8 6 3.2595 0.2994 2.2852 9 6 3.7532 -0.3266 3.4145 10 6 5.0928 -0.6603 3.4914 11 6 5.9395 -0.3688 2.4391 12 6 5.4460 0.2578 1.3070 13 9 6.2729 0.5433 0.2776 14 7 3.9816 2.6798 0.0011 15 6 3.6593 3.5385 1.1434 16 6 4.6711 3.1903 -1.0662 17 1 4.5150 2.7836 -2.0545 18 6 5.5709 4.2305 -0.8779 19 7 5.8761 4.6242 0.3403 20 14 6.3483 5.0716 -2.3536 21 1 5.4986 6.2134 -2.7771 22 1 7.6983 5.5689 -1.9855 23 1 6.4662 4.1009 -3.4713 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2130 0.5597 2.2262 28 1 3.0920 -0.5551 4.2372 29 1 5.4782 -1.1453 4.3760 30 1 6.9859 -0.6292 2.4996 31 1 4.4305 3.4330 1.9063 32 1 3.6123 4.5770 0.8154 33 1 2.6952 3.2446 1.5583 34 1 6.5044 5.3513 0.4719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:43 Heat of formation + Delta-G solvation = -89.234627 kcal Electronic energy + Delta-G solvation = -21155.865070 eV Core-core repulsion = 17775.998487 eV Total energy + Delta-G solvation = -3379.866583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.66080 -41.69316 -39.75012 -37.91628 -36.86118 -34.16449 -32.02427 -31.29547 -29.33593 -28.13639 -27.52369 -24.27036 -23.84863 -22.91501 -21.25163 -19.08694 -18.78197 -18.30246 -17.71481 -17.33182 -17.00641 -16.76346 -16.37535 -16.19717 -15.53360 -15.21813 -14.78562 -14.68002 -14.35016 -13.96023 -13.81245 -13.44578 -13.10915 -12.95595 -12.92497 -12.79578 -12.52232 -12.40905 -12.26099 -12.09455 -11.85495 -11.66638 -11.41850 -10.69777 -9.88387 -9.51021 -8.90303 -7.94194 -5.49278 0.29606 0.34505 1.21731 1.43249 1.45328 1.53888 1.77609 2.45233 2.72306 3.24449 3.45163 3.54354 3.72507 3.88250 4.11521 4.13865 4.29241 4.35685 4.37471 4.50521 4.54973 4.72083 4.77795 4.95412 5.19221 5.22062 5.29851 5.38889 5.45239 5.50097 5.51285 5.57380 6.05117 6.21357 6.83066 7.03136 7.63645 8.12157 9.11071 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.008882 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.266621 B = 3151.837143 C = 4196.017744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.361 6.361 3 C 0.452 3.548 4 O -0.523 6.523 5 C 0.216 3.784 6 H 0.102 0.898 7 C -0.133 4.133 8 C -0.092 4.092 9 C -0.123 4.123 10 C -0.084 4.084 11 C -0.161 4.161 12 C 0.096 3.904 13 F -0.149 7.149 14 N -0.570 5.570 15 C 0.192 3.808 16 C -0.279 4.279 17 H 0.067 0.933 18 C -0.033 4.033 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.267 1.267 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.137 0.863 27 H 0.118 0.882 28 H 0.163 0.837 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.001 0.999 32 H 0.026 0.974 33 H 0.016 0.984 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -13.583 6.119 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.293 3.707 4 O -0.411 6.411 5 C 0.105 3.895 6 H 0.120 0.880 7 C -0.136 4.136 8 C -0.111 4.111 9 C -0.141 4.141 10 C -0.101 4.101 11 C -0.180 4.180 12 C 0.076 3.924 13 F -0.128 7.128 14 N -0.290 5.290 15 C 0.047 3.953 16 C -0.408 4.408 17 H 0.084 0.916 18 C -0.230 4.230 19 N -0.568 5.568 20 Si 0.800 3.200 21 H -0.211 1.211 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.136 0.864 28 H 0.181 0.819 29 H 0.189 0.811 30 H 0.167 0.833 31 H 0.019 0.981 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.727 -13.095 6.110 15.544 hybrid contribution 0.406 1.172 -1.172 1.706 sum -5.321 -11.924 4.938 13.959 Atomic orbital electron populations 1.23530 0.75487 1.05610 1.02161 1.86602 1.24573 1.32649 1.83853 1.25277 0.93020 0.81362 0.71079 1.90586 1.67256 1.37555 1.45744 1.18810 0.86141 0.87189 0.97341 0.88003 1.20178 0.93672 1.01262 0.98531 1.20971 0.98693 0.98276 0.93119 1.21481 0.96575 0.98413 0.97643 1.21394 0.92728 0.97902 0.98117 1.21421 1.02345 1.01596 0.92643 1.17879 0.87481 1.00228 0.86799 1.91481 1.71590 1.91714 1.58001 1.43766 1.62384 1.03147 1.19685 1.20379 0.93442 0.93203 0.88234 1.19410 1.17172 1.16857 0.87361 0.91559 1.25917 0.97220 1.00804 0.99080 1.70190 1.36011 1.29684 1.20945 0.85197 0.77301 0.78460 0.79012 1.21055 1.21417 1.19139 0.92062 0.92753 0.84545 0.86405 0.81921 0.81052 0.83256 0.98069 0.95542 0.96603 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.72 9.63 -51.41 -0.50 -12.22 16 3 C 0.45 18.51 5.44 71.24 0.39 18.90 16 4 O -0.52 -24.36 14.54 21.97 0.32 -24.04 16 5 C 0.22 9.72 2.54 43.50 0.11 9.83 16 6 H 0.10 4.62 7.83 -2.39 -0.02 4.60 16 7 C -0.13 -5.27 4.69 -19.82 -0.09 -5.36 16 8 C -0.09 -2.96 8.83 22.26 0.20 -2.76 16 9 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 10 C -0.08 -1.92 10.04 22.26 0.22 -1.69 16 11 C -0.16 -4.82 10.03 22.31 0.22 -4.60 16 12 C 0.10 3.78 7.25 22.38 0.16 3.95 16 13 F -0.15 -6.86 16.75 44.97 0.75 -6.10 16 14 N -0.57 -30.56 2.52 -711.23 -1.79 -32.35 16 15 C 0.19 10.39 7.87 127.77 1.01 11.39 16 16 C -0.28 -16.03 9.51 84.03 0.80 -15.23 16 17 H 0.07 3.74 7.84 -2.91 -0.02 3.71 16 18 C -0.03 -1.91 5.13 84.86 0.44 -1.47 16 19 N -0.92 -55.68 10.90 21.65 0.24 -55.45 16 20 Si 0.97 46.26 29.56 68.60 2.03 48.28 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 25 H 0.05 1.32 8.13 -2.38 -0.02 1.30 16 26 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.12 3.74 6.30 -2.91 -0.02 3.72 16 28 H 0.16 2.64 8.06 -2.92 -0.02 2.61 16 29 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.00 0.06 7.75 -2.39 -0.02 0.04 16 32 H 0.03 1.54 7.04 -2.39 -0.02 1.52 16 33 H 0.02 0.79 6.56 -2.39 -0.02 0.77 16 34 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.09 297.36 7.04 -65.05 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.11 Total: 4.83 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 4.87 Total: 11.99 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.55 Total: -87.79 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.18 Total: -36.26 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.75 Total: -6.10 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.09 7.04 -65.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.182 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds