Wall clock time and date at job start Mon Mar 30 2020 00:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99954 * 2 1 4 4 O 1.20831 * 119.99896 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00277 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47055 * 300.00112 * 5 3 2 7 7 C 1.50698 * 109.47126 * 59.99600 * 5 3 2 8 8 C 1.38227 * 120.01362 * 16.48630 * 7 5 3 9 9 C 1.38219 * 120.02502 * 179.72483 * 8 7 5 10 10 C 1.38271 * 120.05414 * 0.54676 * 9 8 7 11 11 C 1.38182 * 120.02089 * 359.72916 * 10 9 8 12 12 C 1.38438 * 120.01348 * 196.75765 * 7 5 3 13 13 F 1.35091 * 120.02729 * 0.02562 * 12 7 5 14 14 N 1.46495 * 109.47262 * 179.97438 * 5 3 2 15 15 C 1.46505 * 120.00054 * 293.69303 * 14 5 3 16 16 C 1.36929 * 120.00440 * 113.69716 * 14 5 3 17 17 H 1.08003 * 119.99715 * 341.62987 * 16 14 5 18 18 C 1.38813 * 120.00576 * 161.62252 * 16 14 5 19 19 N 1.31617 * 119.99836 * 330.35969 * 18 16 14 20 20 Si 1.86800 * 119.99998 * 150.62437 * 18 16 14 21 21 H 1.48504 * 109.47066 * 179.72844 * 20 18 16 22 22 H 1.48502 * 109.47361 * 299.73028 * 20 18 16 23 23 H 1.48497 * 109.47001 * 59.73115 * 20 18 16 24 24 H 1.09004 * 109.46934 * 60.00729 * 1 2 3 25 25 H 1.09002 * 109.46507 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47235 * 299.99981 * 1 2 3 27 27 H 1.08005 * 119.98288 * 359.97438 * 8 7 5 28 28 H 1.08002 * 119.97543 * 180.27571 * 9 8 7 29 29 H 1.07998 * 119.99004 * 179.75173 * 10 9 8 30 30 H 1.08003 * 120.00780 * 180.02562 * 11 10 9 31 31 H 1.08996 * 109.47519 * 275.51588 * 15 14 5 32 32 H 1.09007 * 109.46565 * 35.51253 * 15 14 5 33 33 H 1.08994 * 109.47132 * 155.51211 * 15 14 5 34 34 H 0.97001 * 120.00117 * 357.16718 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1057 0.5915 -1.2295 8 6 3.2674 0.3238 -2.2954 9 6 3.7631 -0.2979 -3.4260 10 6 5.0953 -0.6630 -3.4877 11 6 5.9339 -0.4016 -2.4210 12 6 5.4397 0.2264 -1.2901 13 9 6.2586 0.4821 -0.2465 14 7 3.9816 2.6798 -0.0002 15 6 3.7009 3.5261 -1.1626 16 6 4.6323 3.2020 1.0856 17 1 4.5830 2.6971 2.0390 18 6 5.3555 4.3803 0.9609 19 7 5.9132 4.6915 -0.1899 20 14 5.5434 5.5206 2.4285 21 1 6.3596 6.6985 2.0389 22 1 4.2026 5.9743 2.8778 23 1 6.2173 4.7957 3.5355 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2255 0.6043 -2.2464 28 1 3.1083 -0.5026 -4.2602 29 1 5.4806 -1.1523 -4.3700 30 1 6.9745 -0.6865 -2.4696 31 1 4.4863 3.3937 -1.9067 32 1 2.7405 3.2437 -1.5941 33 1 3.6668 4.5703 -0.8521 34 1 5.8537 4.0784 -0.9392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:46 Heat of formation + Delta-G solvation = -88.947463 kcal Electronic energy + Delta-G solvation = -21174.687421 eV Core-core repulsion = 17794.833290 eV Total energy + Delta-G solvation = -3379.854131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.80231 -41.78419 -39.86395 -38.13974 -37.07593 -34.33852 -31.92244 -31.36504 -29.44071 -28.39960 -27.37537 -24.23769 -23.82976 -23.01213 -21.37431 -19.69893 -18.86717 -18.45782 -17.82705 -17.46416 -16.88629 -16.81488 -16.53692 -15.97361 -15.72018 -15.44205 -15.02724 -14.82044 -14.48345 -14.06401 -13.80652 -13.59515 -13.38708 -13.08242 -12.92536 -12.79898 -12.51844 -12.48936 -12.12913 -11.91717 -11.77511 -11.60010 -11.57715 -10.54100 -9.98274 -9.62947 -9.21784 -8.41659 -5.43040 0.18437 0.24627 1.13259 1.53269 1.61160 1.71430 1.82201 2.52785 2.68218 3.14024 3.30510 3.40913 3.57979 3.77848 4.01954 4.04635 4.19694 4.30140 4.31956 4.41690 4.45021 4.49324 4.66492 4.78844 4.89055 4.98690 5.10603 5.21344 5.30787 5.35930 5.42739 5.64180 5.95551 6.26445 6.68978 6.89648 7.61675 7.93851 8.89937 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.008801 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.508669 B = 3180.600924 C = 4244.292159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.361 6.361 3 C 0.452 3.548 4 O -0.523 6.523 5 C 0.220 3.780 6 H 0.098 0.902 7 C -0.138 4.138 8 C -0.091 4.091 9 C -0.120 4.120 10 C -0.081 4.081 11 C -0.158 4.158 12 C 0.090 3.910 13 F -0.152 7.152 14 N -0.576 5.576 15 C 0.158 3.842 16 C -0.372 4.372 17 H 0.057 0.943 18 C -0.061 4.061 19 N -0.929 5.929 20 Si 1.114 2.886 21 H -0.286 1.286 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.165 0.835 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.000 1.000 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -14.001 -6.700 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.292 3.708 4 O -0.411 6.411 5 C 0.109 3.891 6 H 0.116 0.884 7 C -0.141 4.141 8 C -0.110 4.110 9 C -0.138 4.138 10 C -0.098 4.098 11 C -0.177 4.177 12 C 0.070 3.930 13 F -0.130 7.130 14 N -0.296 5.296 15 C 0.013 3.987 16 C -0.501 4.501 17 H 0.075 0.925 18 C -0.259 4.259 19 N -0.570 5.570 20 Si 0.937 3.063 21 H -0.212 1.212 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.080 0.920 25 H 0.156 0.844 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.183 0.817 29 H 0.192 0.808 30 H 0.170 0.830 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.907 -12.204 -6.123 14.877 hybrid contribution -0.648 -0.974 0.059 1.171 sum -6.555 -13.178 -6.064 15.919 Atomic orbital electron populations 1.23548 0.75333 1.05700 1.02205 1.86595 1.24699 1.32546 1.83818 1.25245 0.92961 0.81427 0.71150 1.90590 1.67206 1.37573 1.45721 1.18709 0.86457 0.86594 0.97352 0.88397 1.20158 0.93872 1.01680 0.98356 1.20974 0.98681 0.98335 0.92964 1.21519 0.96629 0.98010 0.97643 1.21445 0.92728 0.97609 0.98067 1.21452 1.02505 1.01311 0.92399 1.17925 0.87689 1.00865 0.86499 1.91483 1.72097 1.92367 1.57090 1.43863 1.64318 1.03923 1.17500 1.20718 0.95611 0.94243 0.88086 1.20157 1.30577 1.10765 0.88562 0.92466 1.27104 0.93932 0.99994 1.04899 1.70904 1.39305 1.41964 1.04817 0.82890 0.76439 0.74731 0.72202 1.21215 1.21105 1.19809 0.91957 0.84444 0.92769 0.86383 0.81705 0.80772 0.83004 0.98157 0.94701 0.94795 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.75 9.72 -51.40 -0.50 -12.25 16 3 C 0.45 18.55 5.43 71.24 0.39 18.93 16 4 O -0.52 -24.40 14.69 21.95 0.32 -24.08 16 5 C 0.22 9.89 2.56 43.50 0.11 10.00 16 6 H 0.10 4.54 7.76 -2.39 -0.02 4.52 16 7 C -0.14 -5.32 4.61 -19.82 -0.09 -5.41 16 8 C -0.09 -2.83 8.84 22.26 0.20 -2.64 16 9 C -0.12 -2.76 10.04 22.27 0.22 -2.53 16 10 C -0.08 -1.74 10.04 22.26 0.22 -1.51 16 11 C -0.16 -4.50 10.03 22.31 0.22 -4.28 16 12 C 0.09 3.45 7.25 22.38 0.16 3.61 16 13 F -0.15 -6.86 16.72 44.97 0.75 -6.11 16 14 N -0.58 -30.73 2.45 -711.23 -1.74 -32.47 16 15 C 0.16 8.31 7.74 127.77 0.99 9.30 16 16 C -0.37 -21.79 9.47 84.04 0.80 -20.99 16 17 H 0.06 3.35 7.93 -2.91 -0.02 3.32 16 18 C -0.06 -3.61 4.61 84.86 0.39 -3.22 16 19 N -0.93 -57.78 12.57 21.65 0.27 -57.50 16 20 Si 1.11 52.88 30.01 68.60 2.06 54.93 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.06 1.41 8.13 -2.38 -0.02 1.39 16 25 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.12 3.64 6.38 -2.91 -0.02 3.63 16 28 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.00 0.02 6.98 -2.39 -0.02 0.00 16 32 H 0.03 1.69 6.72 -2.38 -0.02 1.67 16 33 H 0.03 1.94 6.77 -2.39 -0.02 1.92 16 34 H 0.26 16.39 6.03 -92.71 -0.56 15.83 16 Total: -1.00 -74.44 295.83 7.30 -67.14 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.32 Total: 7.28 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 4.81 Total: 3.06 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.47 Total: -89.97 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.18 Total: -36.33 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.75 Total: -6.11 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 2.06 Total: 54.93 kcal Total: -74.44 7.30 -67.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.812 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds