Wall clock time and date at job start Mon Mar 30 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76195 * 103.00082 * 2 1 4 4 C 1.38920 * 120.02610 * 0.25542 * 3 2 1 5 5 C 1.38092 * 119.97889 * 180.25607 * 4 3 2 6 6 C 1.38717 * 120.01941 * 359.48929 * 5 4 3 7 7 O 1.36006 * 119.97120 * 180.27939 * 6 5 4 8 8 C 1.42898 * 116.99499 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47064 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.47311 * 64.99604 * 9 8 7 11 11 C 1.46505 * 120.00344 * 270.00447 * 10 9 8 12 12 C 1.36937 * 119.99993 * 90.00098 * 10 9 8 13 13 H 1.08001 * 119.99934 * 22.71257 * 12 10 9 14 14 C 1.38812 * 120.00292 * 202.71045 * 12 10 9 15 15 N 1.31623 * 119.99773 * 11.51896 * 14 12 10 16 16 Si 1.86800 * 119.99960 * 191.52149 * 14 12 10 17 17 H 1.48500 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47181 * 120.00012 * 16 14 12 19 19 H 1.48509 * 109.46915 * 240.00041 * 16 14 12 20 20 C 1.38716 * 120.04936 * 0.25077 * 6 5 4 21 21 C 1.38081 * 120.02478 * 0.02562 * 20 6 5 22 22 H 1.09004 * 109.46804 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46550 * 299.99892 * 1 2 3 24 24 H 1.08994 * 109.47120 * 60.00119 * 1 2 3 25 25 H 1.07998 * 120.01166 * 0.02562 * 4 3 2 26 26 H 1.07990 * 119.98861 * 179.76798 * 5 4 3 27 27 H 1.09008 * 109.47446 * 299.99713 * 8 7 6 28 28 H 1.08997 * 109.47467 * 60.00270 * 8 7 6 29 29 H 1.08994 * 109.47269 * 185.00321 * 9 8 7 30 30 H 1.09002 * 109.46611 * 305.00279 * 9 8 7 31 31 H 1.09003 * 109.47066 * 93.90990 * 11 10 9 32 32 H 1.08994 * 109.47116 * 213.91028 * 11 10 9 33 33 H 1.09000 * 109.47078 * 333.91342 * 11 10 9 34 34 H 0.97004 * 119.99398 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.98467 * 180.02562 * 20 6 5 36 36 H 1.08007 * 120.01277 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1949 2.6647 0.0054 5 6 1.5066 4.0100 0.0000 6 6 2.8334 4.4149 0.0000 7 8 3.1393 5.7401 0.0005 8 6 4.5259 6.0857 0.0010 9 6 4.6718 7.6088 0.0021 10 7 4.1370 8.1497 1.2541 11 6 2.7251 8.5302 1.3438 12 6 4.9569 8.2996 2.3406 13 1 6.0252 8.3796 2.2041 14 6 4.4148 8.3489 3.6176 15 7 3.1529 8.0277 3.8097 16 14 5.4763 8.8711 5.0633 17 1 6.8483 9.1775 4.5849 18 1 4.8907 10.0801 5.6961 19 1 5.5339 7.7701 6.0583 20 6 3.8483 3.4693 0.0001 21 6 3.5387 2.1236 -0.0003 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.1619 2.3496 0.0100 26 1 0.7173 4.7469 0.0004 27 1 5.0025 5.6748 0.8911 28 1 5.0030 5.6754 -0.8890 29 1 5.7255 7.8729 -0.0871 30 1 4.1198 8.0272 -0.8395 31 1 2.1484 7.6952 1.7418 32 1 2.6220 9.3907 2.0047 33 1 2.3544 8.7876 0.3516 34 1 2.7743 8.0618 4.7022 35 1 4.8809 3.7857 0.0005 36 1 4.3291 1.3874 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075711820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:24 Heat of formation + Delta-G solvation = 11.662846 kcal Electronic energy + Delta-G solvation = -17853.779952 eV Core-core repulsion = 15044.501787 eV Total energy + Delta-G solvation = -2809.278164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68133 -37.20319 -35.29821 -31.66186 -31.14131 -30.07056 -28.81030 -28.28261 -25.77581 -23.85483 -22.45399 -21.90064 -20.24275 -18.10947 -17.22867 -16.56266 -15.65755 -15.44601 -14.81546 -14.64386 -14.54882 -13.93345 -13.60329 -13.39099 -13.31158 -13.08001 -12.91545 -12.39102 -12.25610 -11.71234 -11.36952 -11.07615 -10.94673 -10.82799 -10.73037 -10.41357 -10.27039 -10.09820 -9.91835 -9.79533 -8.91454 -8.81024 -8.53479 -7.08587 -6.74217 -5.70279 -3.17537 1.44662 1.51213 1.54270 2.40985 3.37737 3.44683 3.46674 3.76860 3.89282 4.50568 4.89384 4.90700 4.93820 4.97089 5.35724 5.39085 5.45706 5.47829 5.57087 5.69951 5.84580 6.02944 6.05708 6.12237 6.21497 6.39439 6.45488 6.57789 6.65337 6.87598 6.90600 7.46584 7.79070 7.88978 7.94953 8.41094 9.25460 9.88313 10.38291 11.34072 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.004178 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.333000 B = 6700.592506 C = 6987.525763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.137 6.137 3 C -0.137 4.137 4 C -0.091 4.091 5 C -0.140 4.140 6 C 0.151 3.849 7 O -0.291 6.291 8 C 0.036 3.964 9 C 0.152 3.848 10 N -0.597 5.597 11 C 0.170 3.830 12 C -0.262 4.262 13 H 0.069 0.931 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C -0.196 4.196 21 C -0.056 4.056 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.040 0.960 33 H -0.005 1.005 34 H 0.251 0.749 35 H 0.133 0.867 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -12.467 -9.582 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.102 5.898 3 C -0.249 4.249 4 C -0.114 4.114 5 C -0.160 4.160 6 C 0.102 3.898 7 O -0.203 6.203 8 C -0.042 4.042 9 C 0.023 3.977 10 N -0.319 5.319 11 C 0.026 3.974 12 C -0.392 4.392 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C -0.217 4.217 21 C -0.080 4.080 22 H 0.122 0.878 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.143 0.857 26 H 0.151 0.849 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.150 0.850 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.094 -13.281 -9.414 16.570 hybrid contribution -0.118 1.106 1.025 1.512 sum -3.212 -12.175 -8.389 15.130 Atomic orbital electron populations 1.23607 0.95015 1.06674 1.05608 1.85224 1.06258 1.04318 1.93986 1.21325 0.96539 0.95693 1.11366 1.20877 0.97962 0.92112 1.00480 1.20331 0.94448 0.95438 1.05830 1.19222 0.93495 0.84217 0.92854 1.86243 1.28486 1.18980 1.86543 1.24022 0.79094 1.01601 0.99518 1.20971 0.98288 0.88076 0.90356 1.43934 1.07786 1.71779 1.08388 1.20746 0.83562 0.98990 0.94116 1.19260 0.90314 1.44745 0.84851 0.91352 1.25046 0.96409 1.00513 0.97454 1.70108 1.12561 1.51190 1.20768 0.86218 0.79739 0.77937 0.82840 1.20310 1.21578 1.21740 1.21234 0.99439 0.92821 1.08175 1.20465 0.94139 0.95255 0.98101 0.87768 0.89810 0.89910 0.85733 0.84931 0.91822 0.94038 0.91465 0.93377 0.94990 0.94116 0.98606 0.93831 0.84964 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.15 101.05 0.92 -0.26 16 2 S -0.14 -1.63 22.56 -107.50 -2.43 -4.06 16 3 C -0.14 -1.96 6.11 -39.08 -0.24 -2.20 16 4 C -0.09 -1.29 9.36 -39.38 -0.37 -1.66 16 5 C -0.14 -2.28 9.98 -39.46 -0.39 -2.67 16 6 C 0.15 2.73 6.69 -39.23 -0.26 2.47 16 7 O -0.29 -5.89 9.70 -19.76 -0.19 -6.09 16 8 C 0.04 0.67 5.08 37.16 0.19 0.86 16 9 C 0.15 3.07 6.11 -4.04 -0.02 3.04 16 10 N -0.60 -15.15 2.89 -181.12 -0.52 -15.67 16 11 C 0.17 4.35 8.61 59.85 0.52 4.86 16 12 C -0.26 -7.20 9.67 -15.06 -0.15 -7.35 16 13 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 14 C 0.00 0.13 5.12 -17.43 -0.09 0.04 16 15 N -0.90 -26.70 10.62 55.49 0.59 -26.12 16 16 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.20 -3.17 9.03 -39.46 -0.36 -3.52 16 21 C -0.06 -0.83 9.78 -39.39 -0.39 -1.22 16 22 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.08 0.69 7.73 -51.92 -0.40 0.29 16 24 H 0.08 0.63 7.76 -51.93 -0.40 0.23 16 25 H 0.12 1.42 5.87 -52.49 -0.31 1.11 16 26 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.06 1.31 7.66 -51.92 -0.40 0.91 16 28 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 30 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 31 H 0.03 0.89 7.43 -51.93 -0.39 0.50 16 32 H 0.04 1.11 7.20 -51.93 -0.37 0.73 16 33 H 0.00 -0.11 7.85 -51.93 -0.41 -0.51 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 35 H 0.13 1.97 6.29 -52.48 -0.33 1.64 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -31.10 313.09 -8.54 -39.64 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.05 Total: -1.73 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.64 Total: -7.60 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.07 Total: -41.79 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.19 Total: -6.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.43 Total: -4.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.10 -8.54 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075711820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.303 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds