Wall clock time and date at job start Mon Mar 30 2020 00:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76195 * 103.00082 * 2 1 4 4 C 1.38920 * 120.02610 * 0.25542 * 3 2 1 5 5 C 1.38092 * 119.97889 * 180.25607 * 4 3 2 6 6 C 1.38717 * 120.01941 * 359.48929 * 5 4 3 7 7 O 1.36006 * 119.97120 * 180.27939 * 6 5 4 8 8 C 1.42898 * 116.99499 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47064 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.47311 * 64.99604 * 9 8 7 11 11 C 1.46505 * 120.00344 * 270.00447 * 10 9 8 12 12 C 1.36937 * 119.99993 * 90.00098 * 10 9 8 13 13 H 1.08001 * 119.99934 * 22.71257 * 12 10 9 14 14 C 1.38812 * 120.00292 * 202.71045 * 12 10 9 15 15 N 1.31623 * 119.99773 * 11.51896 * 14 12 10 16 16 Si 1.86800 * 119.99960 * 191.52149 * 14 12 10 17 17 H 1.48500 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47181 * 120.00012 * 16 14 12 19 19 H 1.48509 * 109.46915 * 240.00041 * 16 14 12 20 20 C 1.38716 * 120.04936 * 0.25077 * 6 5 4 21 21 C 1.38081 * 120.02478 * 0.02562 * 20 6 5 22 22 H 1.09004 * 109.46804 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46550 * 299.99892 * 1 2 3 24 24 H 1.08994 * 109.47120 * 60.00119 * 1 2 3 25 25 H 1.07998 * 120.01166 * 0.02562 * 4 3 2 26 26 H 1.07990 * 119.98861 * 179.76798 * 5 4 3 27 27 H 1.09008 * 109.47446 * 299.99713 * 8 7 6 28 28 H 1.08997 * 109.47467 * 60.00270 * 8 7 6 29 29 H 1.08994 * 109.47269 * 185.00321 * 9 8 7 30 30 H 1.09002 * 109.46611 * 305.00279 * 9 8 7 31 31 H 1.09003 * 109.47066 * 93.90990 * 11 10 9 32 32 H 1.08994 * 109.47116 * 213.91028 * 11 10 9 33 33 H 1.09000 * 109.47078 * 333.91342 * 11 10 9 34 34 H 0.97004 * 119.99398 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.98467 * 180.02562 * 20 6 5 36 36 H 1.08007 * 120.01277 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1949 2.6647 0.0054 5 6 1.5066 4.0100 0.0000 6 6 2.8334 4.4149 0.0000 7 8 3.1393 5.7401 0.0005 8 6 4.5259 6.0857 0.0010 9 6 4.6718 7.6088 0.0021 10 7 4.1370 8.1497 1.2541 11 6 2.7251 8.5302 1.3438 12 6 4.9569 8.2996 2.3406 13 1 6.0252 8.3796 2.2041 14 6 4.4148 8.3489 3.6176 15 7 3.1529 8.0277 3.8097 16 14 5.4763 8.8711 5.0633 17 1 6.8483 9.1775 4.5849 18 1 4.8907 10.0801 5.6961 19 1 5.5339 7.7701 6.0583 20 6 3.8483 3.4693 0.0001 21 6 3.5387 2.1236 -0.0003 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.1619 2.3496 0.0100 26 1 0.7173 4.7469 0.0004 27 1 5.0025 5.6748 0.8911 28 1 5.0030 5.6754 -0.8890 29 1 5.7255 7.8729 -0.0871 30 1 4.1198 8.0272 -0.8395 31 1 2.1484 7.6952 1.7418 32 1 2.6220 9.3907 2.0047 33 1 2.3544 8.7876 0.3516 34 1 2.7743 8.0618 4.7022 35 1 4.8809 3.7857 0.0005 36 1 4.3291 1.3874 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075711820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:23 Heat of formation + Delta-G solvation = -5.660400 kcal Electronic energy + Delta-G solvation = -17854.531144 eV Core-core repulsion = 15044.501787 eV Total energy + Delta-G solvation = -2810.029357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97752 -38.57604 -37.14727 -33.57163 -32.29301 -31.41180 -29.96267 -29.53787 -27.86840 -25.48946 -23.71774 -23.35997 -21.91247 -19.40137 -18.72192 -18.18911 -17.14031 -16.96553 -16.42851 -15.80708 -15.68686 -15.38312 -15.05195 -14.76504 -14.58781 -14.51433 -14.15410 -13.62224 -13.59814 -13.12506 -12.89251 -12.80270 -12.66027 -12.61831 -12.26839 -12.10057 -11.99944 -11.71776 -11.61555 -11.19336 -10.65229 -10.08894 -9.99163 -8.79551 -8.14341 -7.81615 -5.30705 0.26148 0.30409 0.63195 1.45648 1.46643 1.51879 1.57049 2.41440 2.52229 2.67280 3.32236 3.68687 3.78209 3.85306 4.19744 4.28771 4.29900 4.31556 4.37660 4.48050 4.49944 4.53876 4.83986 4.87656 4.90765 4.94786 5.06881 5.10316 5.22265 5.34569 5.36728 5.64462 5.68772 5.78488 6.32689 6.57581 7.15430 7.87191 8.32802 9.22129 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.004178 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.333000 B = 6700.592506 C = 6987.525763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.146 6.146 3 C -0.139 4.139 4 C -0.089 4.089 5 C -0.154 4.154 6 C 0.116 3.884 7 O -0.319 6.319 8 C 0.045 3.955 9 C 0.146 3.854 10 N -0.614 5.614 11 C 0.189 3.811 12 C -0.266 4.266 13 H 0.078 0.922 14 C -0.054 4.054 15 N -0.938 5.938 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.292 1.292 19 H -0.296 1.296 20 C -0.201 4.201 21 C -0.064 4.064 22 H 0.128 0.872 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.153 0.847 26 H 0.132 0.868 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.000 1.000 32 H 0.013 0.987 33 H 0.023 0.977 34 H 0.245 0.755 35 H 0.139 0.861 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -13.867 -10.467 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.094 5.906 3 C -0.251 4.251 4 C -0.112 4.112 5 C -0.174 4.174 6 C 0.068 3.932 7 O -0.232 6.232 8 C -0.033 4.033 9 C 0.019 3.981 10 N -0.337 5.337 11 C 0.044 3.956 12 C -0.396 4.396 13 H 0.096 0.904 14 C -0.249 4.249 15 N -0.584 5.584 16 Si 0.796 3.204 17 H -0.186 1.186 18 H -0.219 1.219 19 H -0.223 1.223 20 C -0.221 4.221 21 C -0.087 4.087 22 H 0.146 0.854 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.171 0.829 26 H 0.150 0.850 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.018 0.982 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.157 0.843 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.736 -14.702 -10.340 18.182 hybrid contribution -0.286 1.396 1.198 1.861 sum -3.022 -13.306 -9.143 16.425 Atomic orbital electron populations 1.23766 0.91799 1.08528 1.06394 1.85288 1.09820 1.01946 1.93550 1.21661 0.96477 0.97451 1.09557 1.21176 0.99492 0.91131 0.99426 1.20536 0.94004 0.96609 1.06249 1.19514 0.94708 0.83660 0.95280 1.86175 1.28869 1.20607 1.87538 1.23766 0.79131 1.00290 1.00068 1.21209 0.99416 0.88926 0.88527 1.44154 1.07361 1.72621 1.09547 1.20408 0.83999 0.96578 0.94627 1.19668 0.91013 1.43271 0.85643 0.90439 1.25828 0.97594 1.01351 1.00103 1.70293 1.14311 1.53080 1.20756 0.85198 0.78864 0.76929 0.79436 1.18578 1.21888 1.22283 1.21360 0.99414 0.93274 1.08083 1.20748 0.95177 0.95047 0.97731 0.85395 0.89345 0.88782 0.82918 0.84982 0.94311 0.90268 0.89558 0.91658 0.98186 0.96786 0.95884 0.94544 0.84323 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.15 113.37 1.04 -0.81 16 2 S -0.15 -3.12 22.56 -56.49 -1.27 -4.39 16 3 C -0.14 -3.76 6.11 22.60 0.14 -3.62 16 4 C -0.09 -2.40 9.36 22.40 0.21 -2.19 16 5 C -0.15 -5.01 9.98 22.35 0.22 -4.79 16 6 C 0.12 4.24 6.69 22.50 0.15 4.39 16 7 O -0.32 -13.08 9.70 -93.62 -0.91 -13.98 16 8 C 0.04 1.67 5.08 71.98 0.37 2.03 16 9 C 0.15 5.73 6.11 86.38 0.53 6.25 16 10 N -0.61 -31.22 2.89 -726.94 -2.10 -33.32 16 11 C 0.19 9.85 8.61 127.77 1.10 10.95 16 12 C -0.27 -14.61 9.67 84.03 0.81 -13.80 16 13 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 14 C -0.05 -3.06 5.12 84.86 0.43 -2.62 16 15 N -0.94 -57.18 10.62 21.65 0.23 -56.95 16 16 Si 0.97 45.54 29.57 68.60 2.03 47.57 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 20 C -0.20 -6.42 9.03 22.35 0.20 -6.22 16 21 C -0.06 -1.81 9.78 22.40 0.22 -1.59 16 22 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.09 1.17 7.73 -2.39 -0.02 1.15 16 24 H 0.09 1.11 7.76 -2.39 -0.02 1.09 16 25 H 0.15 3.11 5.87 -2.91 -0.02 3.09 16 26 H 0.13 4.16 8.06 -2.92 -0.02 4.14 16 27 H 0.04 1.61 7.66 -2.38 -0.02 1.59 16 28 H 0.08 2.31 7.66 -2.39 -0.02 2.29 16 29 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 30 H 0.07 2.33 7.87 -2.39 -0.02 2.32 16 31 H 0.00 -0.01 7.43 -2.39 -0.02 -0.03 16 32 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 33 H 0.02 1.04 7.85 -2.39 -0.02 1.02 16 34 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.14 4.08 6.29 -2.91 -0.02 4.07 16 36 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -67.89 313.09 4.46 -63.43 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.06 Total: 9.65 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.42 Total: -12.01 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -1.87 Total: -90.27 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.91 Total: -13.98 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -1.27 Total: -4.39 kcal Total: -67.89 4.46 -63.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075711820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.773 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds