Wall clock time and date at job start Mon Mar 30 2020 00:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00341 * 2 1 4 4 C 1.50701 * 109.47212 * 269.99894 * 3 2 1 5 5 H 1.08005 * 119.99568 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00137 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47313 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47091 * 119.99962 * 8 6 4 11 11 H 1.48505 * 109.47361 * 240.00010 * 8 6 4 12 12 C 1.34783 * 119.99889 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00125 * 183.31229 * 12 2 1 14 14 C 1.47528 * 119.99842 * 3.32106 * 12 2 1 15 15 C 1.36594 * 125.77245 * 173.48861 * 14 12 2 16 16 N 1.34808 * 106.83978 * 180.02562 * 15 14 12 17 17 C 1.46507 * 126.59188 * 180.26302 * 16 15 14 18 18 C 1.50694 * 109.47198 * 124.70700 * 17 16 15 19 19 N 1.34773 * 120.00083 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99887 * 0.02562 * 18 17 16 21 21 N 1.40204 * 106.81216 * 359.97438 * 16 15 14 22 22 N 1.28756 * 108.37089 * 0.02562 * 21 16 15 23 23 H 1.08997 * 109.47355 * 264.11435 * 1 2 3 24 24 H 1.09005 * 109.46695 * 24.11968 * 1 2 3 25 25 H 1.08999 * 109.47299 * 144.11499 * 1 2 3 26 26 H 1.08998 * 109.47031 * 29.99548 * 3 2 1 27 27 H 1.09001 * 109.47177 * 149.99704 * 3 2 1 28 28 H 0.97002 * 120.00384 * 180.02562 * 7 6 4 29 29 H 1.07998 * 126.57563 * 0.02562 * 15 14 12 30 30 H 1.09005 * 109.46911 * 244.71151 * 17 16 15 31 31 H 1.09003 * 109.46942 * 4.70660 * 17 16 15 32 32 H 0.97000 * 120.00033 * 359.97438 * 19 18 17 33 33 H 0.97007 * 120.00275 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5535 3.6179 -0.6732 8 14 3.4381 3.4166 -3.4340 9 1 2.8610 2.4161 -4.3674 10 1 2.8001 4.7369 -3.6681 11 1 4.9008 3.5254 -3.6667 12 6 2.1389 -1.1673 0.0005 13 8 3.3533 -1.1682 0.0614 14 6 1.4030 -2.4438 -0.0729 15 6 1.9638 -3.6822 -0.2060 16 7 0.9493 -4.5695 -0.2332 17 6 1.0648 -6.0246 -0.3580 18 6 0.3511 -6.6857 0.7929 19 7 0.3246 -8.0299 0.8866 20 8 -0.2001 -6.0082 1.6342 21 7 -0.2373 -3.8325 -0.1124 22 7 0.0674 -2.5849 -0.0204 23 1 -0.3634 -0.1054 1.0222 24 1 -0.3633 0.9380 -0.4200 25 1 -0.3634 -0.8326 -0.6024 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1382 0.5139 28 1 4.0297 4.4442 -0.8505 29 1 3.0178 -3.9072 -0.2760 30 1 0.6145 -6.3456 -1.2974 31 1 2.1172 -6.3081 -0.3440 32 1 0.7645 -8.5719 0.2131 33 1 -0.1351 -8.4556 1.6273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:35 Heat of formation + Delta-G solvation = 44.752912 kcal Electronic energy + Delta-G solvation = -19756.189167 eV Core-core repulsion = 16434.345433 eV Total energy + Delta-G solvation = -3321.843735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07622 -39.83993 -38.46436 -34.90010 -34.49049 -34.16537 -32.50418 -30.75350 -28.95519 -27.45403 -25.70579 -23.71546 -22.92492 -21.79299 -21.13818 -19.23926 -18.00452 -17.60332 -16.68418 -16.45845 -16.20028 -15.56957 -15.35981 -15.21873 -14.46379 -14.35973 -14.06270 -13.85292 -13.17521 -12.73696 -12.25097 -12.14707 -11.94281 -11.78690 -11.16952 -10.92279 -10.85663 -10.60600 -10.38281 -10.25961 -10.16032 -10.03141 -9.53110 -9.11132 -9.01151 -8.37863 -7.51458 -5.98160 -4.02729 1.23792 1.87791 2.02638 2.15576 2.88227 3.34339 3.41084 3.45963 3.87373 4.02606 4.16829 4.22064 4.43423 4.46147 4.50523 4.99779 5.22440 5.35878 5.37414 5.86521 6.16983 6.19181 6.31857 6.34782 6.69188 6.72277 7.16327 7.51571 7.63088 7.66655 7.98305 8.14863 8.29824 8.50018 8.94420 9.12243 9.61925 11.09877 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.003869 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.917108 B = 7235.647681 C = 7380.919572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.582 5.582 3 C 0.243 3.757 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.587 3.413 13 O -0.544 6.544 14 C -0.078 4.078 15 C 0.082 3.918 16 N -0.363 5.363 17 C 0.106 3.894 18 C 0.503 3.497 19 N -0.852 5.852 20 O -0.507 6.507 21 N -0.049 5.049 22 N -0.202 5.202 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.262 0.738 29 H 0.204 0.796 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.403 0.597 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 -24.366 -0.249 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.312 5.312 3 C 0.124 3.876 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.371 3.629 13 O -0.422 6.422 14 C -0.216 4.216 15 C -0.072 4.072 16 N -0.150 5.150 17 C -0.020 4.020 18 C 0.285 3.715 19 N -0.418 5.418 20 O -0.379 6.379 21 N -0.029 5.029 22 N -0.076 5.076 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.221 0.779 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.232 0.768 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.099 -23.625 0.353 24.402 hybrid contribution 1.262 -0.304 -1.071 1.683 sum -4.837 -23.930 -0.718 24.424 Atomic orbital electron populations 1.21989 0.80168 1.03150 1.01175 1.47989 1.07056 1.07058 1.69086 1.19384 0.92704 0.77843 0.97629 1.21492 1.36268 1.06302 0.92283 0.92300 1.24936 0.95419 0.96366 0.97432 1.69948 1.38528 1.14303 1.30629 0.86432 0.77965 0.78323 0.84629 1.19810 1.20983 1.20910 1.16753 0.86159 0.81676 0.78311 1.90758 1.12637 1.86613 1.52173 1.21906 0.89740 0.95830 1.14132 1.23281 0.95786 0.88757 0.99364 1.49766 1.06845 1.06769 1.51583 1.21637 1.04444 0.76190 0.99735 1.20423 0.80953 0.83116 0.87010 1.43708 1.59767 1.06557 1.31775 1.90910 1.43217 1.63092 1.40680 1.82055 1.03588 0.96608 1.20664 1.74834 1.13016 1.09087 1.10700 0.93663 0.91305 0.89845 0.94626 0.93558 0.92797 0.77931 0.85510 0.84818 0.76840 0.76011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 9.59 59.85 0.57 2.14 16 2 N -0.58 -13.78 2.86 -184.20 -0.53 -14.30 16 3 C 0.24 6.68 5.16 -5.20 -0.03 6.66 16 4 C -0.52 -15.34 9.39 -34.44 -0.32 -15.66 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.59 13.44 7.67 -12.47 -0.10 13.35 16 13 O -0.54 -13.92 16.43 5.29 0.09 -13.83 16 14 C -0.08 -1.45 6.69 -83.55 -0.56 -2.01 16 15 C 0.08 1.15 11.28 -16.84 -0.19 0.96 16 16 N -0.36 -4.50 3.41 -62.24 -0.21 -4.71 16 17 C 0.11 0.64 7.02 -5.19 -0.04 0.60 16 18 C 0.50 4.06 8.13 -10.99 -0.09 3.97 16 19 N -0.85 -2.69 8.87 31.22 0.28 -2.41 16 20 O -0.51 -7.29 16.56 5.56 0.09 -7.20 16 21 N -0.05 -0.81 12.88 60.35 0.78 -0.04 16 22 N -0.20 -3.71 8.81 32.85 0.29 -3.42 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 25 H 0.08 1.58 5.31 -51.93 -0.28 1.30 16 26 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.20 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.13 0.23 8.08 -51.93 -0.42 -0.18 16 32 H 0.40 -0.28 8.83 -40.82 -0.36 -0.64 16 33 H 0.41 1.21 8.93 -40.82 -0.36 0.85 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -40.55 299.44 -3.28 -43.83 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -3.45 Total: -4.94 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -0.84 Total: 11.66 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 1.34 Total: -51.21 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.18 Total: -21.03 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -40.55 -3.28 -43.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.585 kcal (2) G-P(sol) polarization free energy of solvation -40.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds