Wall clock time and date at job start Mon Mar 30 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00341 * 2 1 4 4 C 1.50701 * 109.47212 * 269.99894 * 3 2 1 5 5 H 1.08005 * 119.99568 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00137 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47313 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47091 * 119.99962 * 8 6 4 11 11 H 1.48505 * 109.47361 * 240.00010 * 8 6 4 12 12 C 1.34783 * 119.99889 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00125 * 183.31229 * 12 2 1 14 14 C 1.47528 * 119.99842 * 3.32106 * 12 2 1 15 15 C 1.36594 * 125.77245 * 173.48861 * 14 12 2 16 16 N 1.34808 * 106.83978 * 180.02562 * 15 14 12 17 17 C 1.46507 * 126.59188 * 180.26302 * 16 15 14 18 18 C 1.50694 * 109.47198 * 124.70700 * 17 16 15 19 19 N 1.34773 * 120.00083 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99887 * 0.02562 * 18 17 16 21 21 N 1.40204 * 106.81216 * 359.97438 * 16 15 14 22 22 N 1.28756 * 108.37089 * 0.02562 * 21 16 15 23 23 H 1.08997 * 109.47355 * 264.11435 * 1 2 3 24 24 H 1.09005 * 109.46695 * 24.11968 * 1 2 3 25 25 H 1.08999 * 109.47299 * 144.11499 * 1 2 3 26 26 H 1.08998 * 109.47031 * 29.99548 * 3 2 1 27 27 H 1.09001 * 109.47177 * 149.99704 * 3 2 1 28 28 H 0.97002 * 120.00384 * 180.02562 * 7 6 4 29 29 H 1.07998 * 126.57563 * 0.02562 * 15 14 12 30 30 H 1.09005 * 109.46911 * 244.71151 * 17 16 15 31 31 H 1.09003 * 109.46942 * 4.70660 * 17 16 15 32 32 H 0.97000 * 120.00033 * 359.97438 * 19 18 17 33 33 H 0.97007 * 120.00275 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5535 3.6179 -0.6732 8 14 3.4381 3.4166 -3.4340 9 1 2.8610 2.4161 -4.3674 10 1 2.8001 4.7369 -3.6681 11 1 4.9008 3.5254 -3.6667 12 6 2.1389 -1.1673 0.0005 13 8 3.3533 -1.1682 0.0614 14 6 1.4030 -2.4438 -0.0729 15 6 1.9638 -3.6822 -0.2060 16 7 0.9493 -4.5695 -0.2332 17 6 1.0648 -6.0246 -0.3580 18 6 0.3511 -6.6857 0.7929 19 7 0.3246 -8.0299 0.8866 20 8 -0.2001 -6.0082 1.6342 21 7 -0.2373 -3.8325 -0.1124 22 7 0.0674 -2.5849 -0.0204 23 1 -0.3634 -0.1054 1.0222 24 1 -0.3633 0.9380 -0.4200 25 1 -0.3634 -0.8326 -0.6024 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1382 0.5139 28 1 4.0297 4.4442 -0.8505 29 1 3.0178 -3.9072 -0.2760 30 1 0.6145 -6.3456 -1.2974 31 1 2.1172 -6.3081 -0.3440 32 1 0.7645 -8.5719 0.2131 33 1 -0.1351 -8.4556 1.6273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:34 Heat of formation + Delta-G solvation = 9.465289 kcal Electronic energy + Delta-G solvation = -19757.719354 eV Core-core repulsion = 16434.345433 eV Total energy + Delta-G solvation = -3323.373921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.25377 -40.60555 -40.15900 -36.68295 -35.59525 -34.78574 -34.59738 -32.05349 -30.19351 -29.08194 -27.43468 -25.58590 -23.96377 -23.34148 -21.95426 -20.58034 -18.92369 -18.67533 -18.27168 -17.73276 -17.29275 -17.06702 -16.69169 -16.31904 -16.16614 -15.67283 -15.50801 -14.77893 -14.60222 -14.20132 -13.82890 -13.75245 -13.61965 -13.25795 -12.96533 -12.88124 -12.56136 -12.22483 -11.83477 -11.80025 -11.61229 -11.01344 -10.91114 -10.73061 -10.62394 -10.30018 -9.42757 -8.20000 -6.35406 0.14538 0.73259 1.02197 1.40088 1.41717 1.47021 1.54681 2.21641 2.35343 2.42432 2.45240 3.09068 3.22538 3.50210 3.75406 3.92083 4.02815 4.10882 4.33874 4.49541 4.62038 4.76708 5.00119 5.19102 5.22935 5.36833 5.57837 5.82531 5.83104 6.06471 6.37235 6.62710 6.73537 6.93536 7.24413 7.25724 7.39936 8.87718 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.003869 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.917108 B = 7235.647681 C = 7380.919572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.595 5.595 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.973 3.027 9 H -0.267 1.267 10 H -0.270 1.270 11 H -0.277 1.277 12 C 0.584 3.416 13 O -0.582 6.582 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.345 5.345 17 C 0.093 3.907 18 C 0.500 3.500 19 N -0.824 5.824 20 O -0.581 6.581 21 N -0.068 5.068 22 N -0.223 5.223 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.024 0.976 27 H 0.008 0.992 28 H 0.268 0.732 29 H 0.243 0.757 30 H 0.167 0.833 31 H 0.188 0.812 32 H 0.425 0.575 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 -27.038 -2.182 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.324 5.324 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.797 3.203 9 H -0.192 1.192 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.371 3.629 13 O -0.463 6.463 14 C -0.257 4.257 15 C -0.043 4.043 16 N -0.130 5.130 17 C -0.029 4.029 18 C 0.283 3.717 19 N -0.390 5.390 20 O -0.460 6.460 21 N -0.048 5.048 22 N -0.097 5.097 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.042 0.958 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.259 0.741 30 H 0.184 0.816 31 H 0.206 0.794 32 H 0.258 0.742 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.827 -26.416 -1.605 27.098 hybrid contribution 1.177 0.284 -0.427 1.284 sum -4.649 -26.132 -2.032 26.620 Atomic orbital electron populations 1.22070 0.77956 1.03569 1.02172 1.47994 1.08415 1.06334 1.69684 1.18899 0.91245 0.79509 0.96597 1.21700 1.37031 1.06852 0.92681 0.92831 1.25886 0.94736 0.96179 1.02282 1.70064 1.38835 1.14774 1.33090 0.85290 0.78026 0.78272 0.78724 1.19166 1.19567 1.20253 1.17260 0.86007 0.82761 0.76897 1.90709 1.14297 1.87472 1.53833 1.21422 0.90338 0.95339 1.18568 1.23738 0.97322 0.87297 0.95895 1.50068 1.05119 1.08975 1.48860 1.22419 1.08038 0.72064 1.00413 1.20793 0.80155 0.84126 0.86579 1.43529 1.58287 1.05208 1.32014 1.90901 1.46730 1.64872 1.43484 1.81941 1.05519 0.96225 1.21145 1.74745 1.13057 1.10411 1.11521 0.92529 0.91376 0.88675 0.95754 0.97369 0.92280 0.74114 0.81587 0.79448 0.74196 0.75633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.45 9.59 127.77 1.22 4.67 16 2 N -0.59 -29.22 2.86 -854.95 -2.44 -31.66 16 3 C 0.26 14.88 5.16 85.64 0.44 15.32 16 4 C -0.54 -32.64 9.39 25.60 0.24 -32.40 16 5 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.01 0.48 5.46 84.65 0.46 0.94 16 7 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 8 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.58 27.46 7.67 86.69 0.66 28.12 16 13 O -0.58 -30.71 16.43 -4.00 -0.07 -30.77 16 14 C -0.12 -4.37 6.69 40.82 0.27 -4.10 16 15 C 0.11 2.89 11.28 83.85 0.95 3.84 16 16 N -0.34 -7.53 3.41 -350.82 -1.20 -8.73 16 17 C 0.09 0.68 7.02 85.63 0.60 1.28 16 18 C 0.50 6.63 8.13 87.66 0.71 7.34 16 19 N -0.82 -2.34 8.87 -173.54 -1.54 -3.88 16 20 O -0.58 -16.25 16.56 -3.03 -0.05 -16.30 16 21 N -0.07 -2.17 12.88 37.02 0.48 -1.70 16 22 N -0.22 -8.16 8.81 -49.99 -0.44 -8.60 16 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.07 2.70 8.03 -2.38 -0.02 2.68 16 25 H 0.10 3.66 5.31 -2.39 -0.01 3.65 16 26 H 0.02 1.43 8.07 -2.39 -0.02 1.41 16 27 H 0.01 0.53 7.38 -2.39 -0.02 0.51 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.17 0.04 8.14 -2.38 -0.02 0.03 16 31 H 0.19 -0.60 8.08 -2.39 -0.02 -0.62 16 32 H 0.43 -2.56 8.83 -92.71 -0.82 -3.38 16 33 H 0.41 1.36 8.93 -92.70 -0.83 0.53 16 Total: -1.00 -94.06 299.44 2.15 -91.91 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: -0.47 Total: -6.08 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 5.57 Total: 25.02 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.86 Total: -111.43 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.12 Total: -47.07 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -94.06 2.15 -91.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.373 kcal (2) G-P(sol) polarization free energy of solvation -94.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds