Wall clock time and date at job start Mon Mar 30 2020 01:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99626 * 2 1 4 4 O 1.20825 * 120.00384 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99758 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47079 * 179.97438 * 5 3 2 7 7 C 1.36933 * 119.99980 * 270.00181 * 6 5 3 8 8 H 1.08007 * 119.99791 * 143.90944 * 7 6 5 9 9 C 1.38809 * 120.00465 * 323.90614 * 7 6 5 10 10 N 1.31620 * 120.00158 * 156.84103 * 9 7 6 11 11 Si 1.86801 * 120.00024 * 336.84586 * 9 7 6 12 12 H 1.48495 * 109.47132 * 95.11924 * 11 9 7 13 13 H 1.48498 * 109.47487 * 215.12116 * 11 9 7 14 14 H 1.48503 * 109.47051 * 335.12165 * 11 9 7 15 15 C 1.46503 * 119.99944 * 90.00355 * 6 5 3 16 16 C 1.50697 * 109.47101 * 94.33756 * 15 6 5 17 17 C 1.38218 * 120.01475 * 100.17778 * 16 15 6 18 18 C 1.38218 * 120.02646 * 179.71958 * 17 16 15 19 19 C 1.38264 * 120.05232 * 0.29706 * 18 17 16 20 20 C 1.38172 * 120.02804 * 0.02562 * 19 18 17 21 21 C 1.38440 * 120.01395 * 280.46657 * 16 15 6 22 22 F 1.35103 * 120.02517 * 0.02562 * 21 16 15 23 23 H 1.09006 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47443 * 300.00341 * 1 2 3 25 25 H 1.08998 * 109.47088 * 60.00856 * 1 2 3 26 26 H 1.09007 * 109.46938 * 59.99897 * 5 3 2 27 27 H 1.08992 * 109.47591 * 300.00092 * 5 3 2 28 28 H 0.97003 * 120.00180 * 180.02562 * 10 9 7 29 29 H 1.09009 * 109.46730 * 334.33894 * 15 6 5 30 30 H 1.08997 * 109.47204 * 214.33801 * 15 6 5 31 31 H 1.08007 * 119.98379 * 359.97438 * 17 16 15 32 32 H 1.08005 * 119.97342 * 180.27119 * 18 17 16 33 33 H 1.08004 * 119.98867 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.01383 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1762 3.3357 -1.1864 8 1 3.9099 4.3785 -1.2769 9 6 4.7156 2.6603 -2.2725 10 7 4.4960 3.0975 -3.4945 11 14 5.7532 1.1311 -2.0001 12 1 4.8984 -0.0764 -2.1284 13 1 6.8366 1.0806 -3.0144 14 1 6.3494 1.1732 -0.6407 15 6 4.1888 3.3831 1.2682 16 6 5.6449 3.3118 1.6501 17 6 6.4755 4.3907 1.4127 18 6 7.8098 4.3277 1.7681 19 6 8.3165 3.1834 2.3559 20 6 7.4895 2.1011 2.5881 21 6 6.1524 2.1634 2.2334 22 9 5.3428 1.1058 2.4601 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 3.9564 0.7806 -0.8892 27 1 3.9557 0.7811 0.8907 28 1 4.8726 2.6253 -4.2535 29 1 3.5858 2.9146 2.0461 30 1 3.8928 4.4263 1.1579 31 1 6.0809 5.2849 0.9530 32 1 8.4571 5.1729 1.5862 33 1 9.3593 3.1351 2.6328 34 1 7.8855 1.2075 3.0476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080873195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:00 Heat of formation + Delta-G solvation = -91.699644 kcal Electronic energy + Delta-G solvation = -20858.326474 eV Core-core repulsion = 17478.353000 eV Total energy + Delta-G solvation = -3379.973474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84666 -41.32968 -39.90491 -37.99759 -36.92677 -34.10539 -32.62941 -31.31129 -30.03180 -27.87997 -27.67668 -24.23653 -23.59474 -22.51212 -21.68592 -19.20721 -18.71684 -18.47216 -17.83680 -17.31037 -17.15924 -16.79403 -16.68258 -16.54481 -15.73140 -15.07740 -14.93498 -14.72330 -14.56160 -14.29231 -14.03293 -13.98911 -13.38620 -13.04222 -12.95421 -12.81519 -12.72989 -12.21621 -12.16126 -11.89263 -11.73330 -11.72847 -11.43473 -10.76716 -9.80529 -9.51427 -9.08999 -8.29052 -5.69728 0.32101 0.40423 1.22018 1.26520 1.38446 1.48782 1.82608 2.32202 2.71247 2.96716 3.30275 3.43419 3.88337 3.92403 4.08865 4.15242 4.18373 4.31839 4.32650 4.34148 4.38573 4.50586 4.65998 4.66812 4.87782 5.07222 5.24059 5.33068 5.41674 5.53190 5.62024 5.79570 6.07545 6.10878 6.66572 6.93534 7.43076 7.82291 8.89708 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.008662 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.462580 B = 3231.638008 C = 3925.117605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.432 3.568 4 O -0.525 6.525 5 C 0.133 3.867 6 N -0.575 5.575 7 C -0.254 4.254 8 H 0.048 0.952 9 C -0.010 4.010 10 N -0.936 5.936 11 Si 0.920 3.080 12 H -0.270 1.270 13 H -0.298 1.298 14 H -0.248 1.248 15 C 0.186 3.814 16 C -0.137 4.137 17 C -0.089 4.089 18 C -0.130 4.130 19 C -0.096 4.096 20 C -0.162 4.162 21 C 0.076 3.924 22 F -0.150 7.150 23 H 0.135 0.865 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.266 0.734 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -4.676 13.173 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.272 3.728 4 O -0.413 6.413 5 C 0.004 3.996 6 N -0.294 5.294 7 C -0.384 4.384 8 H 0.065 0.935 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.747 3.253 12 H -0.198 1.198 13 H -0.226 1.226 14 H -0.172 1.172 15 C 0.061 3.939 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.148 4.148 19 C -0.114 4.114 20 C -0.181 4.181 21 C 0.056 3.944 22 F -0.129 7.129 23 H 0.153 0.847 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.371 -4.403 13.017 14.420 hybrid contribution -0.347 -0.598 -0.649 0.949 sum 4.024 -5.001 12.367 13.934 Atomic orbital electron populations 1.23476 0.75788 1.05443 1.01942 1.86558 1.24646 1.33744 1.84229 1.26146 0.94185 0.81189 0.71240 1.90550 1.67407 1.37518 1.45798 1.21365 0.85791 0.88543 1.03884 1.43875 1.74403 1.08409 1.02761 1.18555 1.35810 0.96166 0.87843 0.93479 1.25960 0.98811 1.01271 0.94681 1.69995 1.45509 1.43698 0.98629 0.86212 0.79811 0.80398 0.78892 1.19756 1.22624 1.17180 1.19924 0.89972 0.97772 0.86193 1.20821 0.99557 0.94139 0.99525 1.21138 0.94201 0.97927 0.97470 1.21546 0.94831 0.99686 0.98748 1.21356 1.00876 0.91719 0.97486 1.21396 0.91142 1.01915 1.03613 1.17881 0.89664 0.84318 1.02536 1.91360 1.73299 1.55440 1.92755 0.84651 0.91934 0.93275 0.90364 0.86599 0.92446 0.91774 0.91640 0.85323 0.82831 0.81756 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.38 -14.11 10.57 -51.43 -0.54 -14.66 16 3 C 0.43 19.32 8.03 71.24 0.57 19.89 16 4 O -0.52 -26.40 16.18 21.97 0.36 -26.05 16 5 C 0.13 5.96 5.09 85.63 0.44 6.39 16 6 N -0.57 -27.70 1.58 -710.67 -1.13 -28.82 16 7 C -0.25 -14.41 9.92 84.03 0.83 -13.57 16 8 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 9 C -0.01 -0.55 5.30 84.86 0.45 -0.10 16 10 N -0.94 -58.02 13.97 21.65 0.30 -57.71 16 11 Si 0.92 44.70 25.05 68.60 1.72 46.42 16 12 H -0.27 -12.56 6.64 99.48 0.66 -11.90 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 14 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 15 C 0.19 7.57 5.52 85.63 0.47 8.04 16 16 C -0.14 -4.99 5.44 -19.82 -0.11 -5.10 16 17 C -0.09 -2.85 9.67 22.26 0.22 -2.64 16 18 C -0.13 -3.29 10.04 22.27 0.22 -3.07 16 19 C -0.10 -2.20 10.04 22.26 0.22 -1.98 16 20 C -0.16 -4.35 10.03 22.31 0.22 -4.13 16 21 C 0.08 2.56 7.25 22.38 0.16 2.72 16 22 F -0.15 -5.20 14.46 44.97 0.65 -4.55 16 23 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 24 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 25 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 26 H 0.08 3.74 3.12 -2.38 -0.01 3.73 16 27 H 0.12 4.60 5.73 -2.39 -0.01 4.59 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.06 2.45 7.86 -2.38 -0.02 2.43 16 30 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 31 H 0.13 4.08 8.04 -2.91 -0.02 4.06 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.44 297.17 7.33 -64.11 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.07 Total: 12.81 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.90 Total: 8.44 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -0.82 Total: -86.53 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.19 Total: -40.70 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.65 Total: -4.55 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.42 kcal Total: -71.44 7.33 -64.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080873195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.585 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds