Wall clock time and date at job start Mon Mar 30 2020 00:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99957 * 2 1 4 4 C 1.50698 * 109.47206 * 66.04045 * 3 2 1 5 5 H 1.08004 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00304 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99915 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00466 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47446 * 89.99753 * 8 6 4 10 10 H 1.48500 * 109.47268 * 209.99950 * 8 6 4 11 11 H 1.48502 * 109.47120 * 329.99968 * 8 6 4 12 12 C 1.46896 * 111.00611 * 236.04332 * 2 1 3 13 13 C 1.53002 * 109.46953 * 293.95613 * 12 2 1 14 14 S 1.81399 * 109.47178 * 179.97438 * 13 12 2 15 15 O 1.42099 * 109.47349 * 70.93928 * 14 13 12 16 16 C 1.76199 * 103.00218 * 179.97438 * 14 13 12 17 17 C 1.38238 * 119.99936 * 89.99960 * 16 14 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 14 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38233 * 120.00052 * 270.01964 * 16 14 13 22 22 H 1.09006 * 109.47041 * 183.94964 * 1 2 3 23 23 H 1.08997 * 109.47856 * 303.95863 * 1 2 3 24 24 H 1.08998 * 109.46983 * 63.96251 * 1 2 3 25 25 H 1.08995 * 109.47442 * 186.04228 * 3 2 1 26 26 H 1.09005 * 109.46818 * 306.04110 * 3 2 1 27 27 H 0.96995 * 120.00386 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47664 * 173.95657 * 12 2 1 29 29 H 1.09007 * 109.46848 * 53.95055 * 12 2 1 30 30 H 1.09001 * 109.47385 * 59.99521 * 13 12 2 31 31 H 1.08999 * 109.47048 * 299.99693 * 13 12 2 32 32 H 1.08005 * 120.00068 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99956 * 0.02562 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0737 1.5116 2.0484 6 6 2.0266 3.3495 1.5284 7 7 2.7110 4.0023 0.6145 8 14 1.5827 4.1869 3.1381 9 1 2.6600 3.9509 4.1325 10 1 1.4297 5.6465 2.9110 11 1 0.3053 3.6292 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 16 2.2811 -3.1885 -2.3752 15 8 3.6971 -3.2632 -2.2819 16 6 1.7732 -4.8362 -2.0126 17 6 0.5521 -5.2988 -2.4665 18 6 0.1539 -6.5917 -2.1824 19 6 0.9769 -7.4222 -1.4450 20 6 2.1956 -6.9580 -0.9866 21 6 2.5955 -5.6663 -1.2739 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3635 0.5740 0.8523 24 1 -0.3633 0.4511 -0.9234 25 1 3.0796 1.3445 -0.1082 26 1 1.5611 1.9273 -0.8310 27 1 2.9855 4.9184 0.7764 28 1 3.0798 -0.6611 -1.1755 29 1 1.5612 -0.3873 -2.0628 30 1 0.5473 -2.3476 -0.9322 31 1 2.0659 -2.6213 -0.0449 32 1 -0.0907 -4.6500 -3.0430 33 1 -0.8002 -6.9530 -2.5367 34 1 0.6659 -8.4325 -1.2235 35 1 2.8367 -7.6054 -0.4067 36 1 3.5491 -5.3046 -0.9186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:03 Heat of formation + Delta-G solvation = -7.808088 kcal Electronic energy + Delta-G solvation = -17332.794021 eV Core-core repulsion = 14522.671533 eV Total energy + Delta-G solvation = -2810.122487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.12764 -36.79897 -35.65561 -32.73776 -31.27449 -31.12930 -30.39975 -27.02856 -25.38811 -23.14507 -22.81922 -22.16263 -20.12256 -18.20165 -17.02677 -16.33760 -15.81439 -15.40021 -15.19104 -14.87649 -14.48204 -14.33930 -13.73654 -13.67889 -13.25871 -13.20098 -12.89305 -12.21894 -11.95775 -11.77421 -11.63147 -11.36349 -11.23963 -10.90603 -10.74620 -10.61125 -10.40068 -10.14979 -9.80012 -9.41405 -9.20817 -9.17062 -8.43505 -8.30135 -7.25709 -6.02204 -4.03670 0.74094 1.15974 1.84109 2.73421 3.32687 3.38430 3.41804 3.49305 3.92718 4.43374 4.64700 4.73278 4.82791 5.07675 5.16740 5.21838 5.31452 5.33493 5.39142 5.57171 5.77217 5.88601 6.08015 6.09111 6.11915 6.16461 6.21523 6.32370 6.37887 6.71272 6.74337 7.28759 7.32633 7.79829 8.08630 8.19481 8.54401 9.03703 9.60399 11.08766 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.037111 B = 0.003509 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.318319 B = 7978.103655 C = 8202.436437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.538 5.538 3 C 0.190 3.810 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.075 3.925 13 C -0.442 4.442 14 S 1.320 4.680 15 O -0.852 6.852 16 C -0.455 4.455 17 C -0.046 4.046 18 C -0.140 4.140 19 C -0.090 4.090 20 C -0.137 4.137 21 C -0.053 4.053 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.013 0.987 25 H 0.030 0.970 26 H -0.006 1.006 27 H 0.261 0.739 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -19.904 -9.134 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.264 5.264 3 C 0.065 3.935 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.055 4.055 13 C -0.579 4.579 14 S 1.518 4.482 15 O -0.848 6.848 16 C -0.551 4.551 17 C -0.065 4.065 18 C -0.159 4.159 19 C -0.108 4.108 20 C -0.157 4.157 21 C -0.072 4.072 22 H 0.065 0.935 23 H 0.092 0.908 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.614 -19.635 -9.510 22.797 hybrid contribution 0.287 -0.016 2.261 2.280 sum -6.327 -19.651 -7.248 21.880 Atomic orbital electron populations 1.22256 0.88893 0.99495 1.00700 1.62104 1.07050 1.17773 1.39426 1.19771 0.95491 0.81416 0.96789 1.21158 1.34883 0.96899 1.01712 0.91876 1.24997 0.95315 0.97342 0.97012 1.69959 1.38372 1.11481 1.34003 0.86484 0.78837 0.78407 0.83586 1.20652 1.21285 1.19869 1.21574 1.00387 0.89958 0.93539 1.27834 1.09143 1.05552 1.15381 1.69482 0.91358 0.83267 1.04105 1.93104 1.26130 1.82908 1.82629 1.27907 1.01658 1.18135 1.07397 1.20896 0.93728 0.95651 0.96209 1.21279 1.00082 0.94568 0.99939 1.21331 0.94063 0.99513 0.95940 1.21275 0.97108 0.96233 1.01047 1.21200 0.98553 0.93687 0.93788 0.93545 0.90750 0.96819 0.95215 0.98864 0.92895 0.91102 0.94830 0.86908 0.88814 0.84573 0.85519 0.85913 0.85931 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.14 60.06 0.55 1.21 16 2 N -0.54 -11.82 4.75 -244.37 -1.16 -12.98 16 3 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 4 C -0.51 -14.50 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.08 1.35 4.97 -3.82 -0.02 1.33 16 13 C -0.44 -6.18 5.81 37.16 0.22 -5.97 16 14 S 1.32 15.24 13.55 -107.50 -1.46 13.79 16 15 O -0.85 -15.15 16.90 -35.23 -0.60 -15.75 16 16 C -0.46 -5.12 5.61 -39.58 -0.22 -5.34 16 17 C -0.05 -0.39 9.75 -39.58 -0.39 -0.78 16 18 C -0.14 -1.14 10.05 -39.58 -0.40 -1.54 16 19 C -0.09 -0.80 10.05 -39.58 -0.40 -1.19 16 20 C -0.14 -1.45 10.05 -39.58 -0.40 -1.84 16 21 C -0.05 -0.68 9.44 -39.58 -0.37 -1.05 16 22 H 0.05 0.72 6.47 -51.93 -0.34 0.39 16 23 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 26 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 29 H 0.03 0.52 8.12 -51.92 -0.42 0.10 16 30 H 0.11 1.31 6.55 -51.92 -0.34 0.97 16 31 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 32 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.80 7.45 -52.49 -0.39 1.40 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -36.57 316.13 -9.71 -46.27 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.13 Total: -3.22 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -1.84 Total: -23.46 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.43 Total: -39.24 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.60 Total: -15.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 15.24 SS G_CDS: -1.46 Total: 13.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.57 -9.71 -46.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.464 kcal (2) G-P(sol) polarization free energy of solvation -36.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds