Wall clock time and date at job start Mon Mar 30 2020 00:56:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46901 * 110.99957 * 2 1
4 4 C 1.50698 * 109.47206 * 66.04045 * 3 2 1
5 5 H 1.08004 * 119.99903 * 359.97438 * 4 3 2
6 6 C 1.37876 * 120.00304 * 180.02562 * 4 3 2
7 7 N 1.31521 * 119.99915 * 0.02562 * 6 4 3
8 8 Si 1.86794 * 120.00466 * 180.02562 * 6 4 3
9 9 H 1.48497 * 109.47446 * 89.99753 * 8 6 4
10 10 H 1.48500 * 109.47268 * 209.99950 * 8 6 4
11 11 H 1.48502 * 109.47120 * 329.99968 * 8 6 4
12 12 C 1.46896 * 111.00611 * 236.04332 * 2 1 3
13 13 C 1.53002 * 109.46953 * 293.95613 * 12 2 1
14 14 S 1.81399 * 109.47178 * 179.97438 * 13 12 2
15 15 O 1.42099 * 109.47349 * 70.93928 * 14 13 12
16 16 C 1.76199 * 103.00218 * 179.97438 * 14 13 12
17 17 C 1.38238 * 119.99936 * 89.99960 * 16 14 13
18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 14
19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16
20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17
21 21 C 1.38233 * 120.00052 * 270.01964 * 16 14 13
22 22 H 1.09006 * 109.47041 * 183.94964 * 1 2 3
23 23 H 1.08997 * 109.47856 * 303.95863 * 1 2 3
24 24 H 1.08998 * 109.46983 * 63.96251 * 1 2 3
25 25 H 1.08995 * 109.47442 * 186.04228 * 3 2 1
26 26 H 1.09005 * 109.46818 * 306.04110 * 3 2 1
27 27 H 0.96995 * 120.00386 * 180.02562 * 7 6 4
28 28 H 1.08997 * 109.47664 * 173.95657 * 12 2 1
29 29 H 1.09007 * 109.46848 * 53.95055 * 12 2 1
30 30 H 1.09001 * 109.47385 * 59.99521 * 13 12 2
31 31 H 1.08999 * 109.47048 * 299.99693 * 13 12 2
32 32 H 1.08005 * 120.00068 * 359.97438 * 17 16 14
33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16
34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17
35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18
36 36 H 1.07999 * 119.99956 * 0.02562 * 21 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6368 2.0472 1.2984
5 1 1.0737 1.5116 2.0484
6 6 2.0266 3.3495 1.5284
7 7 2.7110 4.0023 0.6145
8 14 1.5827 4.1869 3.1381
9 1 2.6600 3.9509 4.1325
10 1 1.4297 5.6465 2.9110
11 1 0.3053 3.6292 3.6504
12 6 1.9955 -0.7660 -1.1375
13 6 1.6316 -2.2426 -0.9702
14 16 2.2811 -3.1885 -2.3752
15 8 3.6971 -3.2632 -2.2819
16 6 1.7732 -4.8362 -2.0126
17 6 0.5521 -5.2988 -2.4665
18 6 0.1539 -6.5917 -2.1824
19 6 0.9769 -7.4222 -1.4450
20 6 2.1956 -6.9580 -0.9866
21 6 2.5955 -5.6663 -1.2739
22 1 -0.3633 -1.0253 0.0708
23 1 -0.3635 0.5740 0.8523
24 1 -0.3633 0.4511 -0.9234
25 1 3.0796 1.3445 -0.1082
26 1 1.5611 1.9273 -0.8310
27 1 2.9855 4.9184 0.7764
28 1 3.0798 -0.6611 -1.1755
29 1 1.5612 -0.3873 -2.0628
30 1 0.5473 -2.3476 -0.9322
31 1 2.0659 -2.6213 -0.0449
32 1 -0.0907 -4.6500 -3.0430
33 1 -0.8002 -6.9530 -2.5367
34 1 0.6659 -8.4325 -1.2235
35 1 2.8367 -7.6054 -0.4067
36 1 3.5491 -5.3046 -0.9186
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083218808.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:56:03
Heat of formation + Delta-G solvation = -7.808088 kcal
Electronic energy + Delta-G solvation = -17332.794021 eV
Core-core repulsion = 14522.671533 eV
Total energy + Delta-G solvation = -2810.122487 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.12764 -36.79897 -35.65561 -32.73776 -31.27449 -31.12930 -30.39975 -27.02856
-25.38811 -23.14507 -22.81922 -22.16263 -20.12256 -18.20165 -17.02677 -16.33760
-15.81439 -15.40021 -15.19104 -14.87649 -14.48204 -14.33930 -13.73654 -13.67889
-13.25871 -13.20098 -12.89305 -12.21894 -11.95775 -11.77421 -11.63147 -11.36349
-11.23963 -10.90603 -10.74620 -10.61125 -10.40068 -10.14979 -9.80012 -9.41405
-9.20817 -9.17062 -8.43505 -8.30135 -7.25709 -6.02204 -4.03670 0.74094
1.15974 1.84109 2.73421 3.32687 3.38430 3.41804 3.49305 3.92718
4.43374 4.64700 4.73278 4.82791 5.07675 5.16740 5.21838 5.31452
5.33493 5.39142 5.57171 5.77217 5.88601 6.08015 6.09111 6.11915
6.16461 6.21523 6.32370 6.37887 6.71272 6.74337 7.28759 7.32633
7.79829 8.08630 8.19481 8.54401 9.03703 9.60399 11.08766
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.037111 B = 0.003509 C = 0.003413
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 754.318319 B = 7978.103655 C = 8202.436437
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 N -0.538 5.538
3 C 0.190 3.810
4 C -0.508 4.508
5 H 0.063 0.937
6 C 0.055 3.945
7 N -0.899 5.899
8 Si 0.899 3.101
9 H -0.280 1.280
10 H -0.287 1.287
11 H -0.274 1.274
12 C 0.075 3.925
13 C -0.442 4.442
14 S 1.320 4.680
15 O -0.852 6.852
16 C -0.455 4.455
17 C -0.046 4.046
18 C -0.140 4.140
19 C -0.090 4.090
20 C -0.137 4.137
21 C -0.053 4.053
22 H 0.046 0.954
23 H 0.074 0.926
24 H 0.013 0.987
25 H 0.030 0.970
26 H -0.006 1.006
27 H 0.261 0.739
28 H 0.070 0.930
29 H 0.034 0.966
30 H 0.113 0.887
31 H 0.093 0.907
32 H 0.136 0.864
33 H 0.127 0.873
34 H 0.123 0.877
35 H 0.123 0.877
36 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.399 -19.904 -9.134 23.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 N -0.264 5.264
3 C 0.065 3.935
4 C -0.547 4.547
5 H 0.081 0.919
6 C -0.147 4.147
7 N -0.538 5.538
8 Si 0.727 3.273
9 H -0.207 1.207
10 H -0.213 1.213
11 H -0.199 1.199
12 C -0.055 4.055
13 C -0.579 4.579
14 S 1.518 4.482
15 O -0.848 6.848
16 C -0.551 4.551
17 C -0.065 4.065
18 C -0.159 4.159
19 C -0.108 4.108
20 C -0.157 4.157
21 C -0.072 4.072
22 H 0.065 0.935
23 H 0.092 0.908
24 H 0.032 0.968
25 H 0.048 0.952
26 H 0.011 0.989
27 H 0.071 0.929
28 H 0.089 0.911
29 H 0.052 0.948
30 H 0.131 0.869
31 H 0.112 0.888
32 H 0.154 0.846
33 H 0.145 0.855
34 H 0.141 0.859
35 H 0.141 0.859
36 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -6.614 -19.635 -9.510 22.797
hybrid contribution 0.287 -0.016 2.261 2.280
sum -6.327 -19.651 -7.248 21.880
Atomic orbital electron populations
1.22256 0.88893 0.99495 1.00700 1.62104 1.07050 1.17773 1.39426
1.19771 0.95491 0.81416 0.96789 1.21158 1.34883 0.96899 1.01712
0.91876 1.24997 0.95315 0.97342 0.97012 1.69959 1.38372 1.11481
1.34003 0.86484 0.78837 0.78407 0.83586 1.20652 1.21285 1.19869
1.21574 1.00387 0.89958 0.93539 1.27834 1.09143 1.05552 1.15381
1.69482 0.91358 0.83267 1.04105 1.93104 1.26130 1.82908 1.82629
1.27907 1.01658 1.18135 1.07397 1.20896 0.93728 0.95651 0.96209
1.21279 1.00082 0.94568 0.99939 1.21331 0.94063 0.99513 0.95940
1.21275 0.97108 0.96233 1.01047 1.21200 0.98553 0.93687 0.93788
0.93545 0.90750 0.96819 0.95215 0.98864 0.92895 0.91102 0.94830
0.86908 0.88814 0.84573 0.85519 0.85913 0.85931 0.85491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.67 9.14 60.06 0.55 1.21 16
2 N -0.54 -11.82 4.75 -244.37 -1.16 -12.98 16
3 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16
4 C -0.51 -14.50 8.46 -34.44 -0.29 -14.79 16
5 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16
6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
7 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16
8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16
9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
12 C 0.08 1.35 4.97 -3.82 -0.02 1.33 16
13 C -0.44 -6.18 5.81 37.16 0.22 -5.97 16
14 S 1.32 15.24 13.55 -107.50 -1.46 13.79 16
15 O -0.85 -15.15 16.90 -35.23 -0.60 -15.75 16
16 C -0.46 -5.12 5.61 -39.58 -0.22 -5.34 16
17 C -0.05 -0.39 9.75 -39.58 -0.39 -0.78 16
18 C -0.14 -1.14 10.05 -39.58 -0.40 -1.54 16
19 C -0.09 -0.80 10.05 -39.58 -0.40 -1.19 16
20 C -0.14 -1.45 10.05 -39.58 -0.40 -1.84 16
21 C -0.05 -0.68 9.44 -39.58 -0.37 -1.05 16
22 H 0.05 0.72 6.47 -51.93 -0.34 0.39 16
23 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16
24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
25 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16
26 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16
27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
28 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16
29 H 0.03 0.52 8.12 -51.92 -0.42 0.10 16
30 H 0.11 1.31 6.55 -51.92 -0.34 0.97 16
31 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16
32 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16
33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16
34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16
35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16
36 H 0.13 1.80 7.45 -52.49 -0.39 1.40 16
LS Contribution 316.13 15.07 4.76 4.76
Total: -1.00 -36.57 316.13 -9.71 -46.27
By element:
Atomic # 1 Polarization: 1.91 SS G_CDS: -5.13 Total: -3.22 kcal
Atomic # 6 Polarization: -21.61 SS G_CDS: -1.84 Total: -23.46 kcal
Atomic # 7 Polarization: -38.81 SS G_CDS: -0.43 Total: -39.24 kcal
Atomic # 8 Polarization: -15.15 SS G_CDS: -0.60 Total: -15.75 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Atomic # 16 Polarization: 15.24 SS G_CDS: -1.46 Total: 13.79 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -36.57 -9.71 -46.27 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083218808.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.464 kcal
(2) G-P(sol) polarization free energy of solvation -36.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds