Wall clock time and date at job start Mon Mar 30 2020 00:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99957 * 2 1 4 4 C 1.50698 * 109.47206 * 66.04045 * 3 2 1 5 5 H 1.08004 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00304 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99915 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00466 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47446 * 89.99753 * 8 6 4 10 10 H 1.48500 * 109.47268 * 209.99950 * 8 6 4 11 11 H 1.48502 * 109.47120 * 329.99968 * 8 6 4 12 12 C 1.46896 * 111.00611 * 236.04332 * 2 1 3 13 13 C 1.53002 * 109.46953 * 293.95613 * 12 2 1 14 14 S 1.81399 * 109.47178 * 179.97438 * 13 12 2 15 15 O 1.42099 * 109.47349 * 70.93928 * 14 13 12 16 16 C 1.76199 * 103.00218 * 179.97438 * 14 13 12 17 17 C 1.38238 * 119.99936 * 89.99960 * 16 14 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 14 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38233 * 120.00052 * 270.01964 * 16 14 13 22 22 H 1.09006 * 109.47041 * 183.94964 * 1 2 3 23 23 H 1.08997 * 109.47856 * 303.95863 * 1 2 3 24 24 H 1.08998 * 109.46983 * 63.96251 * 1 2 3 25 25 H 1.08995 * 109.47442 * 186.04228 * 3 2 1 26 26 H 1.09005 * 109.46818 * 306.04110 * 3 2 1 27 27 H 0.96995 * 120.00386 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47664 * 173.95657 * 12 2 1 29 29 H 1.09007 * 109.46848 * 53.95055 * 12 2 1 30 30 H 1.09001 * 109.47385 * 59.99521 * 13 12 2 31 31 H 1.08999 * 109.47048 * 299.99693 * 13 12 2 32 32 H 1.08005 * 120.00068 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99956 * 0.02562 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0737 1.5116 2.0484 6 6 2.0266 3.3495 1.5284 7 7 2.7110 4.0023 0.6145 8 14 1.5827 4.1869 3.1381 9 1 2.6600 3.9509 4.1325 10 1 1.4297 5.6465 2.9110 11 1 0.3053 3.6292 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 16 2.2811 -3.1885 -2.3752 15 8 3.6971 -3.2632 -2.2819 16 6 1.7732 -4.8362 -2.0126 17 6 0.5521 -5.2988 -2.4665 18 6 0.1539 -6.5917 -2.1824 19 6 0.9769 -7.4222 -1.4450 20 6 2.1956 -6.9580 -0.9866 21 6 2.5955 -5.6663 -1.2739 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3635 0.5740 0.8523 24 1 -0.3633 0.4511 -0.9234 25 1 3.0796 1.3445 -0.1082 26 1 1.5611 1.9273 -0.8310 27 1 2.9855 4.9184 0.7764 28 1 3.0798 -0.6611 -1.1755 29 1 1.5612 -0.3873 -2.0628 30 1 0.5473 -2.3476 -0.9322 31 1 2.0659 -2.6213 -0.0449 32 1 -0.0907 -4.6500 -3.0430 33 1 -0.8002 -6.9530 -2.5367 34 1 0.6659 -8.4325 -1.2235 35 1 2.8367 -7.6054 -0.4067 36 1 3.5491 -5.3046 -0.9186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:03 Heat of formation + Delta-G solvation = -34.548366 kcal Electronic energy + Delta-G solvation = -17333.953566 eV Core-core repulsion = 14522.671533 eV Total energy + Delta-G solvation = -2811.282033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85392 -38.48836 -36.91160 -34.85023 -32.09644 -31.88374 -31.85570 -28.94399 -27.08455 -24.32616 -23.58824 -23.55158 -21.76414 -19.08132 -18.50639 -17.97952 -16.99473 -16.60615 -16.48374 -16.09202 -15.97774 -15.40896 -15.04927 -14.87599 -14.75183 -14.31902 -13.93099 -13.73234 -13.41976 -13.15969 -13.04261 -12.77619 -12.64498 -12.52861 -12.29042 -12.13876 -12.05835 -11.70156 -11.42944 -11.09198 -10.63592 -10.20407 -9.90454 -9.38705 -9.00070 -8.22037 -6.32817 -0.07379 0.42551 0.90480 1.39625 1.41776 1.52778 1.78563 2.39180 2.69947 2.93893 3.10126 3.46218 3.91807 3.95702 4.03339 4.09297 4.20426 4.52090 4.52608 4.56918 4.59955 4.78335 4.85340 4.86005 5.01158 5.07745 5.13683 5.20123 5.33554 5.33943 5.40801 5.51180 5.63297 6.02411 6.03611 6.34179 6.62967 6.83652 7.36989 8.89156 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.037111 B = 0.003509 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.318319 B = 7978.103655 C = 8202.436437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.557 5.557 3 C 0.204 3.796 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.972 3.028 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.261 1.261 12 C 0.070 3.930 13 C -0.439 4.439 14 S 1.395 4.605 15 O -0.920 6.920 16 C -0.473 4.473 17 C -0.039 4.039 18 C -0.137 4.137 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.089 4.089 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.026 0.974 25 H -0.007 1.007 26 H -0.027 1.027 27 H 0.265 0.735 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.147 0.853 31 H 0.066 0.934 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 -21.584 -9.446 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.282 5.282 3 C 0.077 3.923 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.796 3.204 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.185 1.185 12 C -0.060 4.060 13 C -0.575 4.575 14 S 1.594 4.406 15 O -0.916 6.916 16 C -0.571 4.571 17 C -0.058 4.058 18 C -0.156 4.156 19 C -0.107 4.107 20 C -0.172 4.172 21 C -0.109 4.109 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.011 0.989 26 H -0.009 1.009 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.085 0.915 32 H 0.199 0.801 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.893 -21.312 -9.822 25.467 hybrid contribution 1.253 0.331 2.296 2.637 sum -8.640 -20.981 -7.526 23.906 Atomic orbital electron populations 1.22299 0.86674 1.01820 1.00377 1.61999 1.09169 1.15073 1.41944 1.19416 0.93289 0.84051 0.95515 1.21481 1.35021 0.97515 1.02422 0.91888 1.25958 0.94977 0.98062 1.00837 1.70089 1.39304 1.11952 1.36198 0.85345 0.78946 0.77367 0.78718 1.20282 1.20446 1.18530 1.21637 0.98718 0.92071 0.93534 1.27847 1.11311 1.02930 1.15390 1.68614 0.88207 0.82690 1.01063 1.92976 1.30610 1.84662 1.83372 1.27695 1.03266 1.17081 1.09020 1.21466 0.92539 0.96690 0.95094 1.21804 1.01174 0.94051 0.98586 1.21758 0.92996 1.01014 0.94888 1.21462 0.98485 0.95530 1.01675 1.21170 0.98207 0.95513 0.95996 0.89485 0.92897 0.95583 0.98859 1.00904 0.92609 0.94189 0.91923 0.83466 0.91503 0.80085 0.81784 0.83058 0.85133 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 9.14 127.69 1.17 2.48 16 2 N -0.56 -24.73 4.75 -927.06 -4.41 -29.14 16 3 C 0.20 11.27 4.72 85.56 0.40 11.67 16 4 C -0.53 -30.69 8.46 25.60 0.22 -30.48 16 5 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 6 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 7 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 8 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 C 0.07 2.51 4.97 86.30 0.43 2.94 16 13 C -0.44 -11.91 5.81 71.98 0.42 -11.50 16 14 S 1.40 31.50 13.55 -56.49 -0.77 30.74 16 15 O -0.92 -34.40 16.90 -148.98 -2.52 -36.92 16 16 C -0.47 -9.98 5.61 22.27 0.12 -9.86 16 17 C -0.04 -0.50 9.75 22.27 0.22 -0.29 16 18 C -0.14 -1.59 10.05 22.27 0.22 -1.37 16 19 C -0.09 -1.27 10.05 22.27 0.22 -1.05 16 20 C -0.15 -3.09 10.05 22.27 0.22 -2.86 16 21 C -0.09 -2.33 9.44 22.27 0.21 -2.12 16 22 H 0.09 2.42 6.47 -2.38 -0.02 2.41 16 23 H 0.05 2.14 6.76 -2.39 -0.02 2.12 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H -0.01 -0.41 7.93 -2.39 -0.02 -0.43 16 26 H -0.03 -1.55 8.12 -2.38 -0.02 -1.57 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.04 1.66 7.93 -2.39 -0.02 1.64 16 29 H 0.06 1.89 8.12 -2.38 -0.02 1.87 16 30 H 0.15 2.90 6.55 -2.39 -0.02 2.88 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.09 2.97 7.45 -2.91 -0.02 2.94 16 Total: -1.00 -84.18 316.13 -0.01 -84.19 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.05 Total: 3.22 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 4.32 Total: -41.98 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -4.12 Total: -86.34 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -2.52 Total: -36.92 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 31.50 SS G_CDS: -0.77 Total: 30.74 kcal Total: -84.18 -0.01 -84.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.639 kcal (2) G-P(sol) polarization free energy of solvation -84.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds