Wall clock time and date at job start Mon Mar 30 2020 00:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00406 * 2 1 4 4 C 1.50700 * 109.46864 * 66.04736 * 3 2 1 5 5 H 1.07995 * 120.00037 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99997 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99703 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00245 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46985 * 89.99875 * 8 6 4 10 10 H 1.48502 * 109.47188 * 209.99951 * 8 6 4 11 11 H 1.48501 * 109.46951 * 329.99608 * 8 6 4 12 12 C 1.46905 * 110.99893 * 236.04650 * 2 1 3 13 13 C 1.53003 * 109.47031 * 293.95629 * 12 2 1 14 14 S 1.81401 * 109.47035 * 179.97438 * 13 12 2 15 15 O 1.42102 * 109.46770 * 289.05290 * 14 13 12 16 16 C 1.76199 * 102.99888 * 179.97438 * 14 13 12 17 17 C 1.38237 * 119.99903 * 90.00339 * 16 14 13 18 18 C 1.38235 * 119.99712 * 180.02562 * 17 16 14 19 19 C 1.38234 * 120.00220 * 359.94731 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00064 * 270.01688 * 16 14 13 22 22 H 1.09001 * 109.47217 * 183.95549 * 1 2 3 23 23 H 1.09000 * 109.46713 * 303.95186 * 1 2 3 24 24 H 1.08993 * 109.46988 * 63.94993 * 1 2 3 25 25 H 1.08993 * 109.47143 * 186.04732 * 3 2 1 26 26 H 1.09003 * 109.46859 * 306.04964 * 3 2 1 27 27 H 0.97008 * 119.99632 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47303 * 173.95283 * 12 2 1 29 29 H 1.08998 * 109.46873 * 53.95334 * 12 2 1 30 30 H 1.08998 * 109.47359 * 59.99689 * 13 12 2 31 31 H 1.08998 * 109.47051 * 299.99596 * 13 12 2 32 32 H 1.08005 * 120.00088 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07998 * 119.99975 * 0.02562 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0741 1.5115 2.0484 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6146 8 14 1.5833 4.1867 3.1384 9 1 2.6607 3.9505 4.1325 10 1 1.4304 5.6463 2.9114 11 1 0.3059 3.6290 3.6507 12 6 1.9955 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9704 14 16 2.2808 -3.1884 -2.3755 15 8 1.5354 -2.8732 -3.5436 16 6 1.7727 -4.8361 -2.0130 17 6 0.5516 -5.2986 -2.4668 18 6 0.1528 -6.5911 -2.1819 19 6 0.9756 -7.4216 -1.4441 20 6 2.1945 -6.9576 -0.9861 21 6 2.5951 -5.6663 -1.2744 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9232 25 1 3.0798 1.3443 -0.1083 26 1 1.5612 1.9274 -0.8309 27 1 2.9860 4.9182 0.7766 28 1 3.0797 -0.6611 -1.1757 29 1 1.5611 -0.3872 -2.0628 30 1 0.5471 -2.3475 -0.9323 31 1 2.0658 -2.6214 -0.0452 32 1 -0.0912 -4.6498 -3.0433 33 1 -0.8013 -6.9523 -2.5361 34 1 0.6641 -8.4315 -1.2219 35 1 2.8354 -7.6049 -0.4059 36 1 3.5488 -5.3048 -0.9193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:07 Heat of formation + Delta-G solvation = -8.236834 kcal Electronic energy + Delta-G solvation = -17339.017647 eV Core-core repulsion = 14528.876568 eV Total energy + Delta-G solvation = -2810.141079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.12909 -36.79605 -35.66961 -32.74211 -31.27555 -31.13141 -30.40276 -27.02981 -25.39723 -23.14605 -22.82065 -22.16263 -20.11439 -18.20715 -17.02992 -16.34282 -15.81042 -15.43515 -15.17115 -14.91855 -14.44134 -14.32239 -13.87379 -13.66634 -13.23996 -13.12504 -12.85842 -12.25538 -11.95717 -11.87363 -11.57195 -11.37217 -11.16175 -10.90727 -10.80680 -10.60196 -10.42836 -10.16643 -9.80189 -9.41482 -9.20441 -9.17170 -8.44120 -8.30194 -7.27698 -6.02797 -4.04214 0.73883 1.15868 1.83164 2.73220 3.32252 3.38031 3.41757 3.49089 3.92172 4.42911 4.65198 4.73231 4.82668 5.07753 5.17758 5.18311 5.29955 5.33106 5.43124 5.57029 5.77022 5.92504 6.07424 6.09612 6.11548 6.15321 6.21119 6.30964 6.39968 6.71089 6.74554 7.25969 7.34215 7.79185 8.05844 8.18187 8.53638 9.03225 9.59905 11.08139 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.037191 B = 0.003504 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.696536 B = 7988.194844 C = 8235.034214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.535 5.535 3 C 0.190 3.810 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.074 3.926 13 C -0.441 4.441 14 S 1.322 4.678 15 O -0.856 6.856 16 C -0.455 4.455 17 C -0.055 4.055 18 C -0.138 4.138 19 C -0.090 4.090 20 C -0.139 4.139 21 C -0.044 4.044 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.010 0.990 25 H 0.033 0.967 26 H -0.009 1.009 27 H 0.261 0.739 28 H 0.080 0.920 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -21.503 -3.908 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.260 5.260 3 C 0.065 3.935 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.056 4.056 13 C -0.579 4.579 14 S 1.520 4.480 15 O -0.852 6.852 16 C -0.551 4.551 17 C -0.074 4.074 18 C -0.157 4.157 19 C -0.108 4.108 20 C -0.158 4.158 21 C -0.063 4.063 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.249 -21.224 -4.316 21.775 hybrid contribution -2.895 0.555 0.404 2.975 sum -0.646 -20.669 -3.912 21.046 Atomic orbital electron populations 1.22242 0.89130 0.99390 1.00573 1.62151 1.06887 1.17757 1.39175 1.19782 0.95534 0.81458 0.96752 1.21154 1.34869 0.96949 1.01655 0.91859 1.24995 0.95330 0.97311 0.97015 1.69964 1.38409 1.11477 1.33967 0.86486 0.78843 0.78423 0.83573 1.20565 1.21333 1.19923 1.21593 1.00480 0.90029 0.93511 1.27846 1.08939 1.05834 1.15255 1.69524 1.15202 0.80868 0.82409 1.93084 1.73487 1.80621 1.37963 1.27892 1.01289 1.18311 1.07582 1.21179 0.94850 0.95919 0.95448 1.21261 1.00145 0.94409 0.99916 1.21332 0.94231 0.99388 0.95891 1.21293 0.96974 0.96476 1.01055 1.20919 0.98466 0.93087 0.93835 0.93805 0.90595 0.97139 0.94912 0.99083 0.92898 0.90206 0.95602 0.89680 0.85948 0.85645 0.85989 0.85911 0.85458 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.07 0.55 1.28 16 2 N -0.53 -11.72 4.75 -244.37 -1.16 -12.88 16 3 C 0.19 4.99 4.72 -4.97 -0.02 4.96 16 4 C -0.51 -14.32 8.46 -34.44 -0.29 -14.62 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.07 1.32 4.97 -3.82 -0.02 1.30 16 13 C -0.44 -6.16 5.81 37.16 0.22 -5.94 16 14 S 1.32 15.24 13.55 -107.50 -1.46 13.79 16 15 O -0.86 -15.02 16.90 -35.23 -0.60 -15.62 16 16 C -0.45 -5.11 5.61 -39.58 -0.22 -5.33 16 17 C -0.05 -0.69 9.44 -39.58 -0.37 -1.06 16 18 C -0.14 -1.44 10.05 -39.58 -0.40 -1.84 16 19 C -0.09 -0.80 10.05 -39.58 -0.40 -1.19 16 20 C -0.14 -1.15 10.05 -39.58 -0.40 -1.55 16 21 C -0.04 -0.38 9.75 -39.58 -0.39 -0.77 16 22 H 0.04 0.79 6.47 -51.93 -0.34 0.45 16 23 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.03 0.89 7.93 -51.93 -0.41 0.48 16 26 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 30 H 0.08 1.32 6.55 -51.92 -0.34 0.98 16 31 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.13 1.74 7.46 -52.48 -0.39 1.34 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -36.09 316.13 -9.71 -45.80 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -5.13 Total: -3.19 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.84 Total: -23.30 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.43 Total: -38.86 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.60 Total: -15.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 15.24 SS G_CDS: -1.46 Total: 13.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.09 -9.71 -45.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds