Wall clock time and date at job start Mon Mar 30 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00406 * 2 1 4 4 C 1.50700 * 109.46864 * 66.04736 * 3 2 1 5 5 H 1.07995 * 120.00037 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99997 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99703 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00245 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46985 * 89.99875 * 8 6 4 10 10 H 1.48502 * 109.47188 * 209.99951 * 8 6 4 11 11 H 1.48501 * 109.46951 * 329.99608 * 8 6 4 12 12 C 1.46905 * 110.99893 * 236.04650 * 2 1 3 13 13 C 1.53003 * 109.47031 * 293.95629 * 12 2 1 14 14 S 1.81401 * 109.47035 * 179.97438 * 13 12 2 15 15 O 1.42102 * 109.46770 * 289.05290 * 14 13 12 16 16 C 1.76199 * 102.99888 * 179.97438 * 14 13 12 17 17 C 1.38237 * 119.99903 * 90.00339 * 16 14 13 18 18 C 1.38235 * 119.99712 * 180.02562 * 17 16 14 19 19 C 1.38234 * 120.00220 * 359.94731 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00064 * 270.01688 * 16 14 13 22 22 H 1.09001 * 109.47217 * 183.95549 * 1 2 3 23 23 H 1.09000 * 109.46713 * 303.95186 * 1 2 3 24 24 H 1.08993 * 109.46988 * 63.94993 * 1 2 3 25 25 H 1.08993 * 109.47143 * 186.04732 * 3 2 1 26 26 H 1.09003 * 109.46859 * 306.04964 * 3 2 1 27 27 H 0.97008 * 119.99632 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47303 * 173.95283 * 12 2 1 29 29 H 1.08998 * 109.46873 * 53.95334 * 12 2 1 30 30 H 1.08998 * 109.47359 * 59.99689 * 13 12 2 31 31 H 1.08998 * 109.47051 * 299.99596 * 13 12 2 32 32 H 1.08005 * 120.00088 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07998 * 119.99975 * 0.02562 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0741 1.5115 2.0484 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6146 8 14 1.5833 4.1867 3.1384 9 1 2.6607 3.9505 4.1325 10 1 1.4304 5.6463 2.9114 11 1 0.3059 3.6290 3.6507 12 6 1.9955 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9704 14 16 2.2808 -3.1884 -2.3755 15 8 1.5354 -2.8732 -3.5436 16 6 1.7727 -4.8361 -2.0130 17 6 0.5516 -5.2986 -2.4668 18 6 0.1528 -6.5911 -2.1819 19 6 0.9756 -7.4216 -1.4441 20 6 2.1945 -6.9576 -0.9861 21 6 2.5951 -5.6663 -1.2744 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9232 25 1 3.0798 1.3443 -0.1083 26 1 1.5612 1.9274 -0.8309 27 1 2.9860 4.9182 0.7766 28 1 3.0797 -0.6611 -1.1757 29 1 1.5611 -0.3872 -2.0628 30 1 0.5471 -2.3475 -0.9323 31 1 2.0658 -2.6214 -0.0452 32 1 -0.0912 -4.6498 -3.0433 33 1 -0.8013 -6.9523 -2.5361 34 1 0.6641 -8.4315 -1.2219 35 1 2.8354 -7.6049 -0.4059 36 1 3.5488 -5.3048 -0.9193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:06 Heat of formation + Delta-G solvation = -34.080501 kcal Electronic energy + Delta-G solvation = -17340.138313 eV Core-core repulsion = 14528.876568 eV Total energy + Delta-G solvation = -2811.261745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85440 -38.52603 -36.90941 -34.83213 -32.10046 -31.88856 -31.85729 -28.99642 -27.15726 -24.31978 -23.58842 -23.55171 -21.79383 -19.08742 -18.48919 -17.98202 -17.01695 -16.67515 -16.40531 -16.14923 -15.96410 -15.48510 -15.09968 -14.89927 -14.67336 -14.32700 -13.96112 -13.73676 -13.53350 -13.21378 -12.99107 -12.77447 -12.61670 -12.50620 -12.34023 -12.17599 -12.07169 -11.74632 -11.43274 -11.08599 -10.60839 -10.20141 -9.90527 -9.37836 -9.11714 -8.20049 -6.30401 -0.07565 0.42487 0.89462 1.42570 1.44164 1.55022 1.78444 2.41360 2.69816 2.93791 3.12453 3.39487 3.87318 3.92221 4.08662 4.10205 4.20524 4.44143 4.51966 4.53964 4.56747 4.60786 4.79747 4.85541 4.95207 5.07705 5.08898 5.18867 5.27912 5.33906 5.40662 5.51189 5.64764 6.02181 6.02750 6.24260 6.57383 6.84800 7.39193 8.91231 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.037191 B = 0.003504 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.696536 B = 7988.194844 C = 8235.034214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.537 5.537 3 C 0.201 3.799 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.067 3.933 13 C -0.440 4.440 14 S 1.394 4.606 15 O -0.920 6.920 16 C -0.472 4.472 17 C -0.089 4.089 18 C -0.152 4.152 19 C -0.089 4.089 20 C -0.138 4.138 21 C -0.040 4.040 22 H 0.072 0.928 23 H 0.062 0.938 24 H -0.001 1.001 25 H 0.019 0.981 26 H -0.044 1.044 27 H 0.265 0.735 28 H 0.100 0.900 29 H 0.005 0.995 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -23.854 -1.833 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.261 5.261 3 C 0.075 3.925 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.191 1.191 12 C -0.062 4.062 13 C -0.576 4.576 14 S 1.593 4.407 15 O -0.916 6.916 16 C -0.570 4.570 17 C -0.108 4.108 18 C -0.171 4.171 19 C -0.107 4.107 20 C -0.157 4.157 21 C -0.059 4.059 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.017 0.983 25 H 0.037 0.963 26 H -0.026 1.026 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.023 0.977 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.181 0.819 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.221 -23.571 -2.245 23.896 hybrid contribution -3.190 1.107 -0.272 3.388 sum 0.031 -22.464 -2.517 22.604 Atomic orbital electron populations 1.22229 0.88563 1.00860 0.99379 1.62113 1.07474 1.15360 1.41187 1.19491 0.94462 0.83555 0.94976 1.21458 1.35039 0.97623 1.02259 0.91808 1.25928 0.94994 0.97977 1.00774 1.70090 1.39328 1.11943 1.36103 0.85354 0.78985 0.77111 0.78980 1.19368 1.20942 1.19103 1.21751 1.01516 0.91848 0.91101 1.27857 1.08143 1.03527 1.18034 1.68763 1.12626 0.79992 0.79308 1.92960 1.74736 1.82342 1.41519 1.27685 1.01829 1.17904 1.09597 1.21166 0.95686 0.96986 0.96971 1.21463 1.01208 0.93885 1.00536 1.21756 0.94116 1.00337 0.94459 1.21798 0.96965 0.96604 1.00313 1.21461 0.99345 0.92988 0.92074 0.90902 0.91901 0.98253 0.96325 1.02607 0.92616 0.88172 0.97682 0.91321 0.83392 0.88558 0.85008 0.83064 0.81927 0.80301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.77 16 2 N -0.54 -23.80 4.75 -927.04 -4.41 -28.21 16 3 C 0.20 10.92 4.72 85.56 0.40 11.32 16 4 C -0.53 -30.03 8.46 25.60 0.22 -29.81 16 5 H 0.06 3.56 7.12 -2.91 -0.02 3.54 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 8 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.07 2.41 4.97 86.30 0.43 2.84 16 13 C -0.44 -11.90 5.81 71.98 0.42 -11.48 16 14 S 1.39 31.36 13.55 -56.49 -0.77 30.59 16 15 O -0.92 -33.46 16.90 -148.98 -2.52 -35.98 16 16 C -0.47 -9.96 5.61 22.27 0.12 -9.84 16 17 C -0.09 -2.25 9.44 22.27 0.21 -2.04 16 18 C -0.15 -3.00 10.05 22.27 0.22 -2.78 16 19 C -0.09 -1.28 10.05 22.27 0.22 -1.05 16 20 C -0.14 -1.67 10.05 22.27 0.22 -1.45 16 21 C -0.04 -0.54 9.75 22.27 0.22 -0.32 16 22 H 0.07 2.61 6.47 -2.39 -0.02 2.59 16 23 H 0.06 2.77 6.76 -2.39 -0.02 2.75 16 24 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.02 1.05 7.93 -2.39 -0.02 1.03 16 26 H -0.04 -2.63 8.12 -2.39 -0.02 -2.65 16 27 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 28 H 0.10 3.13 7.93 -2.39 -0.02 3.12 16 29 H 0.00 0.20 8.12 -2.39 -0.02 0.18 16 30 H 0.07 2.10 6.55 -2.39 -0.02 2.09 16 31 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.10 2.90 7.46 -2.91 -0.02 2.88 16 33 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -80.75 316.13 -0.01 -80.76 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.05 Total: 3.97 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 4.32 Total: -41.30 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -4.12 Total: -84.32 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -2.52 Total: -35.98 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 31.36 SS G_CDS: -0.77 Total: 30.59 kcal Total: -80.75 -0.01 -80.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.677 kcal (2) G-P(sol) polarization free energy of solvation -80.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds