Wall clock time and date at job start Mon Mar 30 2020 00:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47167 * 2 1 4 4 C 1.53001 * 109.46972 * 120.00306 * 2 1 3 5 5 N 1.46500 * 109.47326 * 184.99873 * 4 2 1 6 6 C 1.34771 * 120.00051 * 179.97438 * 5 4 2 7 7 O 1.21691 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.46374 * 120.00011 * 179.97438 * 6 5 4 9 9 H 1.07996 * 119.99728 * 0.02562 * 8 6 5 10 10 C 1.40054 * 120.00088 * 180.02562 * 8 6 5 11 11 N 1.30669 * 119.99872 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 119.99826 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47463 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47187 * 120.00209 * 12 10 8 15 15 H 1.48505 * 109.47188 * 239.99915 * 12 10 8 16 16 O 1.42901 * 109.47226 * 239.99858 * 2 1 3 17 17 C 1.35943 * 116.99940 * 84.78266 * 16 2 1 18 18 C 1.38710 * 120.03349 * 174.62537 * 17 16 2 19 19 C 1.38140 * 119.97143 * 180.02562 * 18 17 16 20 20 C 1.38453 * 120.03144 * 0.26534 * 19 18 17 21 21 F 1.35109 * 119.97118 * 179.74029 * 20 19 18 22 22 C 1.38451 * 120.06274 * 359.48137 * 20 19 18 23 23 C 1.38155 * 120.02483 * 0.51628 * 22 20 19 24 24 H 1.09004 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47170 * 300.00008 * 1 2 3 26 26 H 1.09000 * 109.46950 * 60.00033 * 1 2 3 27 27 H 1.09002 * 109.46771 * 305.00079 * 4 2 1 28 28 H 1.09003 * 109.47186 * 64.99545 * 4 2 1 29 29 H 0.96994 * 119.99494 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00077 * 179.97438 * 11 10 8 31 31 H 1.07999 * 120.01368 * 0.02562 * 18 17 16 32 32 H 1.08000 * 119.98647 * 179.97438 * 19 18 17 33 33 H 1.07993 * 119.99086 * 180.23626 * 22 20 19 34 34 H 1.08000 * 120.01253 * 179.72251 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.6180 1.3110 6 6 4.1729 -1.1828 2.3330 7 8 3.5677 -1.7790 3.2044 8 6 5.6317 -1.0801 2.3945 9 1 6.1688 -0.5513 1.6210 10 6 6.3310 -1.6674 3.4563 11 7 5.6812 -2.3076 4.3919 12 14 8.1927 -1.5357 3.5350 13 1 8.6845 -0.7663 2.3639 14 1 8.5872 -0.8399 4.7862 15 1 8.7865 -2.8967 3.5172 16 8 2.0064 -0.6737 -1.1668 17 6 2.1083 0.0617 -2.3056 18 6 2.6675 -0.4973 -3.4452 19 6 2.7709 0.2512 -4.6016 20 6 2.3216 1.5606 -4.6219 21 9 2.4281 2.2933 -5.7521 22 6 1.7584 2.1183 -3.4868 23 6 1.6537 1.3719 -2.3289 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2618 2.1369 28 1 1.7515 -1.7716 1.2056 29 1 3.9824 -0.1431 0.6163 30 1 6.1655 -2.7147 5.1271 31 1 3.0220 -1.5174 -3.4285 32 1 3.2067 -0.1837 -5.4890 33 1 1.4048 3.1386 -3.5050 34 1 1.2184 1.8086 -1.4422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083363071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:47 Heat of formation + Delta-G solvation = -126.112936 kcal Electronic energy + Delta-G solvation = -19476.172518 eV Core-core repulsion = 16094.706771 eV Total energy + Delta-G solvation = -3381.465747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80036 -41.34282 -39.43934 -38.36052 -35.48401 -34.51612 -32.89823 -31.98369 -30.18836 -28.89289 -26.57151 -24.58908 -23.57889 -22.07248 -21.72697 -19.48384 -19.24492 -18.34794 -17.64988 -17.37981 -16.69315 -16.50361 -16.15911 -15.94610 -15.69368 -15.34493 -14.99560 -14.66861 -14.32428 -14.16739 -13.71677 -13.62701 -13.32527 -13.28347 -13.05999 -12.90659 -12.74383 -12.63186 -12.11870 -11.98270 -11.79812 -11.60371 -10.94903 -10.16702 -9.89071 -9.51197 -9.08775 -8.29950 -6.86158 0.17552 0.21730 1.40266 1.40673 1.58524 2.11400 2.24744 2.46778 2.58769 3.04695 3.33550 3.61533 3.62169 3.78436 3.81498 3.98391 4.09572 4.17705 4.33487 4.49549 4.64720 4.74009 4.83158 4.87218 4.95416 5.11957 5.15983 5.20791 5.28681 5.31844 5.73770 5.86148 6.18681 6.24701 6.41142 6.86484 7.50628 8.47450 8.66463 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.004131 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.823597 B = 6776.040301 C = 7669.265828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 H 0.094 0.906 4 C 0.137 3.863 5 N -0.753 5.753 6 C 0.538 3.462 7 O -0.632 6.632 8 C -0.573 4.573 9 H 0.085 0.915 10 C 0.029 3.971 11 N -0.821 5.821 12 Si 0.998 3.002 13 H -0.248 1.248 14 H -0.267 1.267 15 H -0.269 1.269 16 O -0.319 6.319 17 C 0.112 3.888 18 C -0.137 4.137 19 C -0.109 4.109 20 C 0.038 3.962 21 F -0.149 7.149 22 C -0.109 4.109 23 C -0.184 4.184 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.393 0.607 30 H 0.275 0.725 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 9.064 -16.473 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 H 0.112 0.888 4 C 0.012 3.988 5 N -0.408 5.408 6 C 0.342 3.658 7 O -0.519 6.519 8 C -0.610 4.610 9 H 0.103 0.897 10 C -0.186 4.186 11 N -0.451 5.451 12 Si 0.817 3.183 13 H -0.171 1.171 14 H -0.191 1.191 15 H -0.194 1.194 16 O -0.233 6.233 17 C 0.067 3.933 18 C -0.155 4.155 19 C -0.128 4.128 20 C 0.019 3.981 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.203 4.203 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.541 8.362 -15.694 19.316 hybrid contribution 0.750 0.182 -0.104 0.779 sum -6.790 8.543 -15.798 19.201 Atomic orbital electron populations 1.22293 0.91991 1.03969 1.04570 1.22746 0.96115 0.96619 0.81867 0.88789 1.21118 0.82526 0.99549 0.95615 1.45746 1.05867 1.61070 1.28086 1.18595 0.89101 0.78001 0.80127 1.90551 1.71175 1.48269 1.41938 1.21449 0.90664 1.37978 1.10897 0.89679 1.26960 1.06238 0.91916 0.93462 1.70185 1.39381 1.26166 1.09336 0.84974 0.74829 0.78982 0.79513 1.17144 1.19150 1.19351 1.86219 1.81203 1.38994 1.16929 1.19345 0.95821 0.91116 0.87046 1.20495 1.02550 1.01950 0.90540 1.21132 1.00010 0.92312 0.99350 1.17779 1.05731 0.91033 0.83566 1.91470 1.94666 1.77098 1.49534 1.21170 0.98963 1.01692 0.90961 1.21378 1.05296 0.93389 1.00200 0.91731 0.89009 0.89863 0.91405 0.94431 0.77386 0.91521 0.83838 0.82297 0.82412 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.17 71.98 0.66 -2.69 16 2 C 0.08 2.15 2.26 30.60 0.07 2.22 16 3 H 0.09 2.13 6.32 -2.39 -0.02 2.11 16 4 C 0.14 5.12 5.34 86.38 0.46 5.58 16 5 N -0.75 -34.06 5.50 -467.40 -2.57 -36.63 16 6 C 0.54 31.49 7.75 86.36 0.67 32.16 16 7 O -0.63 -42.58 15.02 -4.32 -0.06 -42.64 16 8 C -0.57 -32.83 9.54 24.83 0.24 -32.60 16 9 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 10 C 0.03 1.65 5.50 85.31 0.47 2.11 16 11 N -0.82 -50.48 11.83 21.84 0.26 -50.23 16 12 Si 1.00 41.12 29.56 68.60 2.03 43.14 16 13 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 14 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 16 O -0.32 -9.17 9.75 -92.91 -0.91 -10.08 16 17 C 0.11 2.72 6.60 22.50 0.15 2.87 16 18 C -0.14 -3.05 9.98 22.36 0.22 -2.83 16 19 C -0.11 -2.13 10.02 22.30 0.22 -1.91 16 20 C 0.04 0.78 7.30 22.37 0.16 0.94 16 21 F -0.15 -3.19 17.27 44.97 0.78 -2.41 16 22 C -0.11 -1.99 10.02 22.30 0.22 -1.77 16 23 C -0.18 -3.62 8.24 22.36 0.18 -3.43 16 24 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.32 6.90 -2.39 -0.02 1.30 16 27 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.39 15.75 8.45 -92.71 -0.78 14.97 16 30 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 31 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.16 2.47 5.42 -2.91 -0.02 2.46 16 Total: -1.00 -76.30 301.92 3.60 -72.70 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.35 Total: 25.48 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 3.73 Total: 0.66 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.31 Total: -86.86 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.97 Total: -52.72 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -76.30 3.60 -72.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083363071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.413 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds