Wall clock time and date at job start Mon Mar 30 2020 00:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47121 * 239.99420 * 2 1 3 5 5 N 1.46506 * 109.46799 * 180.02562 * 4 2 1 6 6 C 1.34777 * 119.99669 * 180.02562 * 5 4 2 7 7 O 1.21691 * 120.00278 * 0.02562 * 6 5 4 8 8 C 1.46372 * 119.99856 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00174 * 359.97438 * 8 6 5 10 10 C 1.40046 * 119.99981 * 180.02562 * 8 6 5 11 11 N 1.30669 * 120.00248 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99961 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47450 * 89.99486 * 12 10 8 14 14 H 1.48502 * 109.47142 * 209.99632 * 12 10 8 15 15 H 1.48503 * 109.47179 * 329.99296 * 12 10 8 16 16 O 1.42905 * 109.46673 * 119.99576 * 2 1 3 17 17 C 1.35944 * 117.00181 * 275.18569 * 16 2 1 18 18 C 1.38710 * 120.02813 * 5.19414 * 17 16 2 19 19 C 1.38152 * 119.96765 * 180.25075 * 18 17 16 20 20 C 1.38448 * 120.03129 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.97230 * 179.97438 * 20 19 18 22 22 C 1.38461 * 120.06011 * 0.02562 * 20 19 18 23 23 C 1.38148 * 120.02973 * 359.97438 * 22 20 19 24 24 H 1.09005 * 109.47153 * 59.99996 * 1 2 3 25 25 H 1.08997 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47478 * 300.00821 * 1 2 3 27 27 H 1.08992 * 109.47583 * 299.99993 * 4 2 1 28 28 H 1.09004 * 109.46867 * 60.00759 * 4 2 1 29 29 H 0.96995 * 120.00286 * 0.02562 * 5 4 2 30 30 H 0.97005 * 120.00441 * 180.02562 * 11 10 8 31 31 H 1.08001 * 120.01528 * 0.25132 * 18 17 16 32 32 H 1.08004 * 119.98158 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.98006 * 179.97438 * 22 20 19 34 34 H 1.08004 * 120.01228 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5050 -0.7219 -1.2488 6 6 4.1789 -1.3052 -2.2597 7 8 3.5705 -1.8311 -3.1731 8 6 5.6426 -1.3062 -2.2591 9 1 6.1826 -0.8392 -1.4488 10 6 6.3429 -1.9119 -3.3099 11 7 5.6896 -2.4766 -4.2906 12 14 8.2109 -1.9125 -3.3094 13 1 8.7054 -3.1258 -2.6103 14 1 8.7062 -1.9115 -4.7094 15 1 8.7062 -0.7008 -2.6083 16 8 2.0062 -0.6736 1.1669 17 6 2.1087 0.0620 2.3055 18 6 1.6575 1.3735 2.3277 19 6 1.7670 2.1215 3.4840 20 6 2.3272 1.5628 4.6202 21 9 2.4341 2.2956 5.7502 22 6 2.7789 0.2542 4.5991 23 6 2.6707 -0.4961 3.4442 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6767 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.9900 -0.3024 -0.5210 30 1 6.1746 -2.8964 -5.0183 31 1 1.2208 1.8096 1.4414 32 1 1.4162 3.1428 3.5014 33 1 3.2160 -0.1802 5.4861 34 1 3.0227 -1.5170 3.4282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083363072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:50 Heat of formation + Delta-G solvation = -102.227129 kcal Electronic energy + Delta-G solvation = -19490.547562 eV Core-core repulsion = 16110.117581 eV Total energy + Delta-G solvation = -3380.429980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.91883 -40.34260 -37.84374 -36.90251 -33.82070 -32.43848 -31.60582 -30.92246 -29.28975 -26.97802 -24.96627 -23.66409 -22.62167 -20.93138 -19.69455 -18.50675 -17.52380 -17.26870 -16.50743 -15.73527 -15.42702 -15.25190 -14.94758 -14.83011 -14.05056 -13.92510 -13.75628 -13.55965 -13.04056 -12.82737 -12.75362 -12.27919 -12.18015 -12.04165 -11.50541 -11.22032 -11.12126 -10.95593 -10.77910 -10.55209 -10.42838 -10.20737 -9.33488 -8.85010 -8.15956 -7.63451 -7.53238 -6.18650 -4.63729 1.00919 1.10956 3.13638 3.14929 3.21568 3.24988 3.45852 4.10342 4.18695 4.52469 4.59065 4.60083 4.63070 4.82860 4.98945 5.08688 5.18450 5.30652 5.39786 5.60396 5.65472 5.73717 5.80416 5.95451 6.01989 6.05320 6.13222 6.24910 6.40284 6.60962 7.38552 7.43894 7.91478 8.06204 8.32516 9.02895 9.51618 10.59662 10.77914 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.004171 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.760202 B = 6711.600992 C = 7634.649642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.077 0.923 4 C 0.139 3.861 5 N -0.765 5.765 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.544 4.544 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.908 3.092 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.265 1.265 16 O -0.295 6.295 17 C 0.133 3.867 18 C -0.186 4.186 19 C -0.112 4.112 20 C 0.048 3.952 21 F -0.145 7.145 22 C -0.112 4.112 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.381 0.619 30 H 0.268 0.732 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 7.726 14.900 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.421 5.421 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.581 4.581 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.732 3.268 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.189 1.189 16 O -0.208 6.208 17 C 0.087 3.913 18 C -0.205 4.205 19 C -0.131 4.131 20 C 0.029 3.971 21 F -0.124 7.124 22 C -0.131 4.131 23 C -0.144 4.144 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.213 0.787 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.256 7.049 14.018 17.730 hybrid contribution 1.044 0.572 0.526 1.301 sum -7.212 7.621 14.544 17.934 Atomic orbital electron populations 1.22321 0.94526 1.03826 1.02825 1.22904 0.94441 0.97071 0.84075 0.90537 1.20999 0.84889 1.00061 0.92694 1.46064 1.03486 1.64750 1.27799 1.18215 0.88375 0.77519 0.79986 1.90599 1.70191 1.48875 1.36847 1.20874 0.89705 1.39114 1.08446 0.91455 1.25701 0.99855 0.93215 0.94411 1.70020 1.36440 1.26011 1.07257 0.86378 0.83151 0.79309 0.77943 1.19714 1.20457 1.18922 1.86275 1.80431 1.37959 1.16181 1.19125 0.94476 0.90232 0.87513 1.21221 1.05770 0.94110 0.99403 1.20907 0.99869 1.00698 0.91623 1.17556 1.05435 0.90751 0.83341 1.91473 1.94608 1.77027 1.49319 1.20942 1.00559 0.92516 0.99079 1.20354 1.02208 1.01535 0.90350 0.90519 0.90993 0.91929 0.92194 0.91224 0.78711 0.92116 0.84240 0.84722 0.84256 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.17 37.16 0.34 -1.56 16 2 C 0.07 0.97 2.31 -26.73 -0.06 0.91 16 3 H 0.08 0.95 6.31 -51.93 -0.33 0.62 16 4 C 0.14 2.56 5.37 -4.04 -0.02 2.54 16 5 N -0.76 -17.10 5.44 -61.72 -0.34 -17.43 16 6 C 0.55 15.85 7.75 -12.99 -0.10 15.75 16 7 O -0.58 -18.85 15.02 5.20 0.08 -18.77 16 8 C -0.54 -15.48 9.54 -35.63 -0.34 -15.82 16 9 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 10 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 11 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 12 Si 0.91 20.21 29.56 -169.99 -5.02 15.19 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 O -0.30 -4.35 9.54 -19.56 -0.19 -4.53 16 17 C 0.13 1.70 6.60 -39.24 -0.26 1.44 16 18 C -0.19 -2.06 8.24 -39.44 -0.32 -2.38 16 19 C -0.11 -1.17 10.02 -39.54 -0.40 -1.57 16 20 C 0.05 0.55 7.30 -39.42 -0.29 0.26 16 21 F -0.15 -1.71 17.27 2.25 0.04 -1.67 16 22 C -0.11 -1.19 10.02 -39.53 -0.40 -1.59 16 23 C -0.13 -1.47 9.98 -39.44 -0.39 -1.87 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.59 6.91 -51.93 -0.36 0.23 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.38 7.73 8.33 -40.82 -0.34 7.39 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 31 H 0.14 1.33 5.42 -52.49 -0.28 1.05 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -34.31 301.63 -6.38 -40.69 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.82 Total: 5.97 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.34 Total: -1.53 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.32 Total: -39.89 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.11 Total: -23.30 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.31 -6.38 -40.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083363072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.538 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds