Wall clock time and date at job start Mon Mar 30 2020 00:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47121 * 239.99420 * 2 1 3 5 5 N 1.46506 * 109.46799 * 180.02562 * 4 2 1 6 6 C 1.34777 * 119.99669 * 180.02562 * 5 4 2 7 7 O 1.21691 * 120.00278 * 0.02562 * 6 5 4 8 8 C 1.46372 * 119.99856 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00174 * 359.97438 * 8 6 5 10 10 C 1.40046 * 119.99981 * 180.02562 * 8 6 5 11 11 N 1.30669 * 120.00248 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99961 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47450 * 89.99486 * 12 10 8 14 14 H 1.48502 * 109.47142 * 209.99632 * 12 10 8 15 15 H 1.48503 * 109.47179 * 329.99296 * 12 10 8 16 16 O 1.42905 * 109.46673 * 119.99576 * 2 1 3 17 17 C 1.35944 * 117.00181 * 275.18569 * 16 2 1 18 18 C 1.38710 * 120.02813 * 5.19414 * 17 16 2 19 19 C 1.38152 * 119.96765 * 180.25075 * 18 17 16 20 20 C 1.38448 * 120.03129 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.97230 * 179.97438 * 20 19 18 22 22 C 1.38461 * 120.06011 * 0.02562 * 20 19 18 23 23 C 1.38148 * 120.02973 * 359.97438 * 22 20 19 24 24 H 1.09005 * 109.47153 * 59.99996 * 1 2 3 25 25 H 1.08997 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47478 * 300.00821 * 1 2 3 27 27 H 1.08992 * 109.47583 * 299.99993 * 4 2 1 28 28 H 1.09004 * 109.46867 * 60.00759 * 4 2 1 29 29 H 0.96995 * 120.00286 * 0.02562 * 5 4 2 30 30 H 0.97005 * 120.00441 * 180.02562 * 11 10 8 31 31 H 1.08001 * 120.01528 * 0.25132 * 18 17 16 32 32 H 1.08004 * 119.98158 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.98006 * 179.97438 * 22 20 19 34 34 H 1.08004 * 120.01228 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5050 -0.7219 -1.2488 6 6 4.1789 -1.3052 -2.2597 7 8 3.5705 -1.8311 -3.1731 8 6 5.6426 -1.3062 -2.2591 9 1 6.1826 -0.8392 -1.4488 10 6 6.3429 -1.9119 -3.3099 11 7 5.6896 -2.4766 -4.2906 12 14 8.2109 -1.9125 -3.3094 13 1 8.7054 -3.1258 -2.6103 14 1 8.7062 -1.9115 -4.7094 15 1 8.7062 -0.7008 -2.6083 16 8 2.0062 -0.6736 1.1669 17 6 2.1087 0.0620 2.3055 18 6 1.6575 1.3735 2.3277 19 6 1.7670 2.1215 3.4840 20 6 2.3272 1.5628 4.6202 21 9 2.4341 2.2956 5.7502 22 6 2.7789 0.2542 4.5991 23 6 2.6707 -0.4961 3.4442 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6767 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.9900 -0.3024 -0.5210 30 1 6.1746 -2.8964 -5.0183 31 1 1.2208 1.8096 1.4414 32 1 1.4162 3.1428 3.5014 33 1 3.2160 -0.1802 5.4861 34 1 3.0227 -1.5170 3.4282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083363072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:50 Heat of formation + Delta-G solvation = -125.923968 kcal Electronic energy + Delta-G solvation = -19491.575134 eV Core-core repulsion = 16110.117581 eV Total energy + Delta-G solvation = -3381.457552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80117 -41.34303 -39.43466 -38.35659 -35.47047 -34.51200 -32.90411 -31.98174 -30.18602 -28.89003 -26.56888 -24.58662 -23.57764 -22.07145 -21.70993 -19.47310 -19.25227 -18.34725 -17.64784 -17.37930 -16.68666 -16.50047 -16.17218 -15.95204 -15.67894 -15.33526 -14.99794 -14.66426 -14.31441 -14.16329 -13.72842 -13.62725 -13.33803 -13.26358 -13.05837 -12.90522 -12.71968 -12.62582 -12.12515 -12.01212 -11.79068 -11.60001 -10.93351 -10.16494 -9.89201 -9.50482 -9.08623 -8.29595 -6.85962 0.17718 0.21906 1.40545 1.41900 1.57203 2.11054 2.25004 2.47063 2.59017 3.05641 3.33710 3.61712 3.62518 3.78663 3.81707 3.98165 4.09493 4.18205 4.33824 4.50144 4.64326 4.74287 4.83279 4.87199 4.95606 5.12087 5.16244 5.20948 5.28836 5.31698 5.73868 5.86407 6.19052 6.24851 6.41514 6.86592 7.51129 8.47703 8.66628 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.004171 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.760202 B = 6711.600992 C = 7634.649642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 H 0.095 0.905 4 C 0.136 3.864 5 N -0.753 5.753 6 C 0.538 3.462 7 O -0.632 6.632 8 C -0.574 4.574 9 H 0.085 0.915 10 C 0.030 3.970 11 N -0.821 5.821 12 Si 0.997 3.003 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.249 1.249 16 O -0.319 6.319 17 C 0.112 3.888 18 C -0.184 4.184 19 C -0.109 4.109 20 C 0.038 3.962 21 F -0.149 7.149 22 C -0.110 4.110 23 C -0.137 4.137 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.393 0.607 30 H 0.275 0.725 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 9.209 16.388 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 H 0.112 0.888 4 C 0.012 3.988 5 N -0.407 5.407 6 C 0.342 3.658 7 O -0.519 6.519 8 C -0.610 4.610 9 H 0.103 0.897 10 C -0.185 4.185 11 N -0.451 5.451 12 Si 0.817 3.183 13 H -0.187 1.187 14 H -0.196 1.196 15 H -0.173 1.173 16 O -0.233 6.233 17 C 0.067 3.933 18 C -0.203 4.203 19 C -0.128 4.128 20 C 0.019 3.981 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.155 4.155 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.521 8.566 15.570 19.297 hybrid contribution 0.745 0.130 0.147 0.770 sum -6.776 8.697 15.718 19.199 Atomic orbital electron populations 1.22292 0.92020 1.03936 1.04578 1.22754 0.96115 0.96624 0.81864 0.88774 1.21131 0.82385 0.99597 0.95702 1.45725 1.05322 1.63189 1.26473 1.18589 0.89188 0.77526 0.80513 1.90550 1.71204 1.51147 1.39049 1.21418 0.90264 1.39809 1.09553 0.89697 1.26955 1.06328 0.91907 0.93352 1.70180 1.39463 1.27063 1.08371 0.85029 0.74784 0.80067 0.78464 1.18679 1.19626 1.17277 1.86218 1.81183 1.38983 1.16911 1.19343 0.95817 0.91093 0.87065 1.21378 1.05319 0.93336 1.00230 1.21169 0.99002 1.01678 0.90949 1.17778 1.05737 0.91040 0.83556 1.91467 1.94663 1.77098 1.49543 1.21136 0.99985 0.92331 0.99357 1.20496 1.02492 1.01934 0.90594 0.88979 0.91789 0.89867 0.94416 0.91465 0.77374 0.91519 0.82611 0.82419 0.82308 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.17 71.98 0.66 -2.69 16 2 C 0.08 2.15 2.31 30.59 0.07 2.22 16 3 H 0.09 2.12 6.31 -2.38 -0.02 2.11 16 4 C 0.14 5.11 5.37 86.38 0.46 5.58 16 5 N -0.75 -34.13 5.44 -467.40 -2.54 -36.67 16 6 C 0.54 31.54 7.75 86.36 0.67 32.21 16 7 O -0.63 -42.61 15.02 -4.32 -0.06 -42.67 16 8 C -0.57 -32.92 9.54 24.83 0.24 -32.68 16 9 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 10 C 0.03 1.67 5.50 85.30 0.47 2.14 16 11 N -0.82 -50.55 11.83 21.83 0.26 -50.29 16 12 Si 1.00 41.14 29.56 68.60 2.03 43.17 16 13 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 14 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 15 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 16 O -0.32 -9.15 9.54 -92.92 -0.89 -10.04 16 17 C 0.11 2.72 6.60 22.49 0.15 2.87 16 18 C -0.18 -3.61 8.24 22.36 0.18 -3.43 16 19 C -0.11 -1.99 10.02 22.30 0.22 -1.77 16 20 C 0.04 0.78 7.30 22.37 0.16 0.94 16 21 F -0.15 -3.19 17.27 44.97 0.78 -2.41 16 22 C -0.11 -2.13 10.02 22.30 0.22 -1.91 16 23 C -0.14 -3.05 9.98 22.36 0.22 -2.82 16 24 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.32 6.91 -2.39 -0.02 1.30 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.39 15.87 8.33 -92.71 -0.77 15.10 16 30 H 0.27 15.28 8.29 -92.70 -0.77 14.51 16 31 H 0.16 2.46 5.42 -2.91 -0.02 2.45 16 32 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -76.29 301.63 3.66 -72.63 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.36 Total: 25.64 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 3.74 Total: 0.65 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.29 Total: -86.96 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.95 Total: -52.71 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -76.29 3.66 -72.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083363072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.299 kcal (2) G-P(sol) polarization free energy of solvation -76.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds