Wall clock time and date at job start Mon Mar 30 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35658 * 116.99634 * 2 1 4 4 C 1.38636 * 120.14003 * 0.28602 * 3 2 1 5 5 C 1.38132 * 120.15440 * 180.29925 * 4 3 2 6 6 C 1.38417 * 120.43534 * 359.71412 * 5 4 3 7 7 C 1.38123 * 120.27377 * 359.97438 * 6 5 4 8 8 F 1.35099 * 120.08784 * 180.02562 * 7 6 5 9 9 C 1.39970 * 119.83670 * 0.02562 * 7 6 5 10 10 C 1.47386 * 120.21462 * 180.02562 * 9 7 6 11 11 O 1.21606 * 120.00434 * 90.00071 * 10 9 7 12 12 N 1.34777 * 119.99950 * 269.99745 * 10 9 7 13 13 C 1.46498 * 119.99828 * 0.27976 * 12 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.46877 * 90.00288 * 14 12 10 16 16 H 1.08005 * 119.99817 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00081 * 179.97438 * 15 14 12 18 18 N 1.31510 * 120.00254 * 180.02562 * 17 15 14 19 19 Si 1.86811 * 119.99850 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46778 * 89.99559 * 19 17 15 21 21 H 1.48493 * 109.46886 * 209.99446 * 19 17 15 22 22 H 1.48492 * 109.47026 * 329.99859 * 19 17 15 23 23 H 1.09004 * 109.47048 * 299.99589 * 1 2 3 24 24 H 1.08999 * 109.47514 * 59.99631 * 1 2 3 25 25 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.92161 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.78205 * 179.69752 * 5 4 3 28 28 H 1.08003 * 119.86260 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.46661 * 269.71691 * 13 12 10 30 30 H 1.08993 * 109.47575 * 29.72405 * 13 12 10 31 31 H 1.09001 * 109.46870 * 149.72361 * 13 12 10 32 32 H 1.09000 * 109.46803 * 209.99767 * 14 12 10 33 33 H 1.09000 * 109.47214 * 330.00561 * 14 12 10 34 34 H 0.97008 * 120.00053 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2924 2.3732 0.0060 5 6 1.9191 3.6042 -0.0003 6 6 3.3008 3.6876 -0.0066 7 6 4.0677 2.5389 -0.0061 8 9 5.4159 2.6247 -0.0118 9 6 3.4446 1.2855 0.0002 10 6 4.2549 0.0544 0.0012 11 8 4.5930 -0.4502 1.0547 12 7 4.6211 -0.5123 -1.1655 13 6 4.2190 0.0989 -2.4347 14 6 5.4270 -1.7358 -1.1644 15 6 4.5167 -2.9368 -1.1569 16 1 3.4451 -2.8022 -1.1538 17 6 5.0519 -4.2074 -1.1552 18 7 4.2576 -5.2555 -1.1492 19 14 6.9055 -4.4402 -1.1614 20 1 7.4017 -4.4977 0.2371 21 1 7.2429 -5.7070 -1.8589 22 1 7.5450 -3.3010 -1.8672 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2139 2.3178 0.0111 27 1 1.3272 4.5075 -0.0005 28 1 3.7811 4.6549 -0.0110 29 1 3.2608 -0.3146 -2.7495 30 1 4.1246 1.1770 -2.3051 31 1 4.9724 -0.1112 -3.1939 32 1 6.0525 -1.7595 -2.0567 33 1 6.0593 -1.7536 -0.2767 34 1 4.6342 -6.1495 -1.1476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088080432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:25 Heat of formation + Delta-G solvation = -77.616146 kcal Electronic energy + Delta-G solvation = -20642.687694 eV Core-core repulsion = 17263.324926 eV Total energy + Delta-G solvation = -3379.362768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.92650 -40.37083 -38.56455 -37.15101 -34.83732 -32.53566 -31.30871 -30.01159 -28.39526 -27.35776 -25.94162 -24.01929 -22.30389 -21.96843 -19.28299 -18.23535 -17.11912 -16.80197 -16.75919 -16.10083 -16.02240 -15.46348 -15.24760 -14.94894 -14.63526 -14.37367 -13.72361 -13.07782 -12.92517 -12.53862 -12.47591 -12.34170 -12.22495 -12.01867 -11.77434 -11.46873 -11.31076 -11.10985 -10.85866 -10.49144 -10.08959 -9.49648 -9.21385 -8.82925 -8.52916 -8.36873 -7.65792 -6.02664 -4.00483 0.91080 1.15410 3.08247 3.25376 3.33533 3.37447 3.40082 3.42094 3.85206 4.26756 4.45166 4.58979 4.81493 4.91559 5.01059 5.12585 5.14348 5.20721 5.30955 5.52597 5.61637 5.74287 5.89221 5.92597 6.02264 6.13113 6.21423 6.56165 6.72811 6.97932 7.27208 7.37001 7.66373 8.23766 8.53134 8.93379 9.03816 9.57693 11.10826 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.006472 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.269313 B = 4325.290181 C = 5082.787979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.291 6.291 3 C 0.191 3.809 4 C -0.224 4.224 5 C -0.043 4.043 6 C -0.197 4.197 7 C 0.165 3.835 8 F -0.126 7.126 9 C -0.181 4.181 10 C 0.566 3.434 11 O -0.526 6.526 12 N -0.585 5.585 13 C 0.089 3.911 14 C 0.215 3.785 15 C -0.524 4.524 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 18.767 -1.484 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.203 6.203 3 C 0.143 3.857 4 C -0.243 4.243 5 C -0.061 4.061 6 C -0.216 4.216 7 C 0.144 3.856 8 F -0.104 7.104 9 C -0.186 4.186 10 C 0.351 3.649 11 O -0.403 6.403 12 N -0.315 5.315 13 C -0.055 4.055 14 C 0.095 3.905 15 C -0.563 4.563 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.842 18.051 -0.950 19.327 hybrid contribution 0.789 -0.151 -0.072 0.807 sum -6.053 17.899 -1.023 18.923 Atomic orbital electron populations 1.23177 0.77731 1.04823 1.01100 1.86276 1.21747 1.25445 1.86800 1.18667 0.89964 0.85224 0.91867 1.21230 1.00540 0.91761 1.10806 1.20793 0.93385 0.97331 0.94611 1.20907 0.94293 0.97280 1.09145 1.17286 0.77142 0.92275 0.98852 1.91546 1.28695 1.96887 1.93252 1.19380 0.92234 0.94317 1.12701 1.17535 0.79882 0.82962 0.84559 1.90776 1.55131 1.63466 1.30922 1.47733 1.52459 1.26799 1.04552 1.21599 1.00928 0.96506 0.86436 1.19739 0.91378 0.81891 0.97488 1.21337 0.95136 0.88903 1.50922 0.90499 1.24842 0.97865 0.95750 0.94549 1.69897 1.34844 0.98162 1.50839 0.86873 0.86246 0.77820 0.78916 1.19872 1.21067 1.19051 0.92453 0.92381 0.87559 0.84374 0.84539 0.84244 0.92716 0.92849 0.91177 0.94983 0.94478 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.29 -5.05 9.95 -18.67 -0.19 -5.23 16 3 C 0.19 3.03 6.70 -38.70 -0.26 2.77 16 4 C -0.22 -2.52 9.03 -39.47 -0.36 -2.87 16 5 C -0.04 -0.41 10.02 -39.55 -0.40 -0.81 16 6 C -0.20 -2.23 10.00 -39.56 -0.40 -2.62 16 7 C 0.16 2.56 6.84 -38.98 -0.27 2.29 16 8 F -0.13 -2.10 16.83 2.25 0.04 -2.06 16 9 C -0.18 -3.33 3.93 -104.79 -0.41 -3.74 16 10 C 0.57 13.26 6.29 -12.54 -0.08 13.18 16 11 O -0.53 -14.60 16.69 5.27 0.09 -14.51 16 12 N -0.58 -13.42 2.86 -184.25 -0.53 -13.94 16 13 C 0.09 1.58 10.30 59.85 0.62 2.19 16 14 C 0.22 5.61 4.27 -5.19 -0.02 5.59 16 15 C -0.52 -15.71 9.94 -34.44 -0.34 -16.05 16 16 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 17 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 19 Si 0.87 22.19 27.47 -169.99 -4.67 17.52 16 20 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 24 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 25 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.14 1.13 6.29 -52.49 -0.33 0.80 16 27 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.81 6.53 -51.93 -0.34 0.47 16 31 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 32 H 0.03 0.78 6.95 -51.93 -0.36 0.42 16 33 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 299.71 15.07 4.52 4.52 Total: -1.00 -37.13 299.71 -4.86 -41.99 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -3.87 Total: -4.03 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.02 Total: 3.27 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.25 Total: -41.46 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.10 Total: -19.74 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -37.13 -4.86 -41.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.630 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds