Wall clock time and date at job start Mon Mar 30 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47087 * 2 1 4 4 C 1.36922 * 119.99889 * 86.65426 * 3 2 1 5 5 H 1.08004 * 119.99420 * 314.10210 * 4 3 2 6 6 C 1.39010 * 120.00189 * 134.38281 * 4 3 2 7 7 N 1.31390 * 119.99754 * 160.87132 * 6 4 3 8 8 Si 1.86799 * 119.99812 * 340.86909 * 6 4 3 9 9 H 1.48493 * 109.47092 * 95.26887 * 8 6 4 10 10 H 1.48507 * 109.46898 * 215.26596 * 8 6 4 11 11 H 1.48502 * 109.47369 * 335.26472 * 8 6 4 12 12 C 1.34773 * 120.00045 * 266.64721 * 3 2 1 13 13 O 1.21635 * 120.00215 * 180.02562 * 12 3 2 14 14 C 1.47294 * 120.00128 * 0.02562 * 12 3 2 15 15 C 1.40026 * 120.21879 * 269.99968 * 14 12 3 16 16 F 1.35104 * 120.08166 * 359.97438 * 15 14 12 17 17 C 1.38111 * 119.83064 * 179.97438 * 15 14 12 18 18 C 1.38435 * 120.27820 * 359.97438 * 17 15 14 19 19 C 1.38153 * 120.44123 * 0.02562 * 18 17 15 20 20 C 1.38600 * 120.16357 * 359.74440 * 19 18 17 21 21 O 1.35662 * 120.14214 * 180.25335 * 20 19 18 22 22 C 1.42904 * 116.99944 * 0.23666 * 21 20 19 23 23 H 1.08996 * 109.47428 * 55.53855 * 1 2 3 24 24 H 1.09006 * 109.47016 * 175.53930 * 1 2 3 25 25 H 1.09000 * 109.46871 * 295.53724 * 1 2 3 26 26 H 1.09002 * 109.46964 * 240.00023 * 2 1 3 27 27 H 1.09002 * 109.47225 * 120.00217 * 2 1 3 28 28 H 0.96995 * 119.99738 * 179.97438 * 7 6 4 29 29 H 1.08008 * 119.86036 * 179.97438 * 17 15 14 30 30 H 1.08003 * 119.77753 * 180.02562 * 18 17 15 31 31 H 1.08001 * 119.91578 * 179.97438 * 19 18 17 32 32 H 1.08992 * 109.47047 * 180.02562 * 22 21 20 33 33 H 1.09007 * 109.46445 * 299.99699 * 22 21 20 34 34 H 1.08998 * 109.47025 * 59.99374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1812 2.0497 1.1838 5 1 1.4075 2.0116 1.9363 6 6 3.3400 2.7821 1.4146 7 7 3.3566 3.7091 2.3457 8 14 4.8733 2.4484 0.4013 9 1 4.9300 3.3988 -0.7383 10 1 6.0773 2.6240 1.2527 11 1 4.8316 1.0570 -0.1162 12 6 2.3073 1.9938 -1.1652 13 8 2.7132 3.1404 -1.1652 14 6 2.1316 1.2748 -2.4386 15 6 3.1862 0.5277 -2.9775 16 9 4.3707 0.4639 -2.3306 17 6 3.0126 -0.1437 -4.1718 18 6 1.8004 -0.0815 -4.8376 19 6 0.7523 0.6521 -4.3163 20 6 0.9050 1.3292 -3.1166 21 8 -0.1262 2.0453 -2.6025 22 6 -1.3451 2.0546 -3.3484 23 1 -0.3634 0.5815 -0.8473 24 1 -0.3633 -1.0246 -0.0799 25 1 -0.3633 0.4430 0.9273 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1653 4.2198 2.5070 29 1 3.8259 -0.7198 -4.5881 30 1 1.6734 -0.6101 -5.7709 31 1 -0.1895 0.6952 -4.8431 32 1 -2.0849 2.6627 -2.8279 33 1 -1.1622 2.4734 -4.3380 34 1 -1.7176 1.0351 -3.4484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088080463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:07 Heat of formation + Delta-G solvation = -67.795617 kcal Electronic energy + Delta-G solvation = -21513.705600 eV Core-core repulsion = 18134.768682 eV Total energy + Delta-G solvation = -3378.936918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.67109 -40.23678 -38.41252 -37.00187 -34.79180 -32.31960 -30.93188 -29.84569 -29.56341 -27.34429 -25.18441 -23.30621 -22.26246 -21.93302 -19.67321 -18.36886 -17.37982 -16.87347 -16.09969 -15.88630 -15.83384 -15.21328 -15.07314 -14.72619 -14.51060 -13.82606 -13.46598 -13.11176 -12.84788 -12.68296 -12.34578 -12.27737 -12.16501 -12.05798 -11.63449 -11.25859 -11.07909 -10.94779 -10.66212 -10.37171 -10.13788 -9.79389 -8.78740 -8.52266 -8.44921 -8.17477 -7.49412 -6.14092 -3.91416 1.12893 1.32974 3.19677 3.35444 3.57690 3.61121 3.72625 3.81582 4.36818 4.54465 4.64383 4.74983 4.98101 5.12153 5.13297 5.14328 5.28263 5.36276 5.46663 5.49609 5.68784 5.92067 6.00524 6.04486 6.17328 6.22829 6.29111 6.33074 6.56506 6.75923 6.85120 7.39624 7.92096 8.08966 8.83647 8.97448 9.49105 9.88906 10.91842 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.009798 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.802554 B = 2857.139479 C = 3479.435299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.448 5.448 4 C -0.347 4.347 5 H 0.095 0.905 6 C 0.095 3.905 7 N -0.864 5.864 8 Si 0.892 3.108 9 H -0.259 1.259 10 H -0.304 1.304 11 H -0.264 1.264 12 C 0.504 3.496 13 O -0.534 6.534 14 C -0.164 4.164 15 C 0.155 3.845 16 F -0.123 7.123 17 C -0.196 4.196 18 C -0.051 4.051 19 C -0.225 4.225 20 C 0.184 3.816 21 O -0.292 6.292 22 C 0.026 3.974 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.272 0.728 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -10.376 -14.300 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.169 5.169 4 C -0.472 4.472 5 H 0.112 0.888 6 C -0.115 4.115 7 N -0.499 5.499 8 Si 0.721 3.279 9 H -0.185 1.185 10 H -0.233 1.233 11 H -0.188 1.188 12 C 0.292 3.708 13 O -0.415 6.415 14 C -0.169 4.169 15 C 0.134 3.866 16 F -0.101 7.101 17 C -0.215 4.215 18 C -0.069 4.069 19 C -0.244 4.244 20 C 0.136 3.864 21 O -0.204 6.204 22 C -0.070 4.070 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.761 -9.536 -13.937 18.190 hybrid contribution 0.823 -0.230 -0.555 1.019 sum -5.938 -9.766 -14.491 18.457 Atomic orbital electron populations 1.22164 0.96823 1.00353 1.02902 1.21535 0.94206 0.85396 1.01128 1.43508 1.58447 1.10100 1.04871 1.18728 1.04222 1.30781 0.93506 0.88788 1.25311 0.98619 0.93108 0.94429 1.69750 1.28853 1.18370 1.32889 0.86665 0.80471 0.80274 0.80511 1.18451 1.23266 1.18807 1.17716 0.83940 0.86416 0.82714 1.90670 1.47733 1.17314 1.85822 1.19639 0.92357 1.04323 1.00572 1.17490 0.81018 0.96632 0.91432 1.91598 1.43428 1.94397 1.80703 1.20918 0.99960 1.05041 0.95598 1.20728 0.91345 0.96162 0.98677 1.21169 1.01471 1.04500 0.97254 1.18610 0.86683 0.90039 0.91023 1.86236 1.20213 1.65888 1.48083 1.23128 0.84674 1.02180 0.96969 0.92313 0.93209 0.92153 0.93058 0.90703 0.91866 0.84484 0.84782 0.84671 0.87960 0.92577 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.23 37.16 0.38 -2.47 16 2 C 0.10 2.07 5.97 -4.04 -0.02 2.05 16 3 N -0.45 -11.62 2.10 -116.08 -0.24 -11.86 16 4 C -0.35 -10.28 9.63 -14.99 -0.14 -10.43 16 5 H 0.09 2.88 8.06 -52.48 -0.42 2.45 16 6 C 0.09 2.93 4.84 -17.45 -0.08 2.85 16 7 N -0.86 -27.46 13.96 55.50 0.77 -26.68 16 8 Si 0.89 25.38 24.54 -169.99 -4.17 21.21 16 9 H -0.26 -7.82 6.49 56.52 0.37 -7.46 16 10 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 11 H -0.26 -7.16 5.86 56.52 0.33 -6.83 16 12 C 0.50 13.32 4.51 -12.58 -0.06 13.26 16 13 O -0.53 -16.48 13.14 5.25 0.07 -16.41 16 14 C -0.16 -3.46 3.88 -104.79 -0.41 -3.87 16 15 C 0.15 2.94 6.86 -38.96 -0.27 2.67 16 16 F -0.12 -2.64 15.11 2.25 0.03 -2.60 16 17 C -0.20 -2.73 10.00 -39.56 -0.40 -3.13 16 18 C -0.05 -0.58 10.03 -39.54 -0.40 -0.98 16 19 C -0.23 -2.85 9.03 -39.48 -0.36 -3.21 16 20 C 0.18 3.18 6.27 -38.69 -0.24 2.94 16 21 O -0.29 -5.07 8.38 -18.69 -0.16 -5.22 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 H 0.06 1.04 5.98 -51.93 -0.31 0.73 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.97 6.43 -51.93 -0.33 0.63 16 27 H 0.07 1.48 8.07 -51.93 -0.42 1.06 16 28 H 0.27 8.12 8.31 -40.82 -0.34 7.78 16 29 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.14 1.24 6.29 -52.49 -0.33 0.91 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.51 7.65 -51.92 -0.40 0.11 16 34 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 286.72 15.07 4.32 4.32 Total: -1.00 -37.27 286.72 -4.34 -41.61 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -3.97 Total: -5.30 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.00 Total: 0.95 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.53 Total: -38.55 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.09 Total: -21.63 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.03 Total: -2.60 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.17 Total: 21.21 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -37.27 -4.34 -41.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.188 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds