Wall clock time and date at job start Mon Mar 30 2020 00:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47087 * 2 1 4 4 C 1.36922 * 119.99889 * 86.65426 * 3 2 1 5 5 H 1.08004 * 119.99420 * 314.10210 * 4 3 2 6 6 C 1.39010 * 120.00189 * 134.38281 * 4 3 2 7 7 N 1.31390 * 119.99754 * 160.87132 * 6 4 3 8 8 Si 1.86799 * 119.99812 * 340.86909 * 6 4 3 9 9 H 1.48493 * 109.47092 * 95.26887 * 8 6 4 10 10 H 1.48507 * 109.46898 * 215.26596 * 8 6 4 11 11 H 1.48502 * 109.47369 * 335.26472 * 8 6 4 12 12 C 1.34773 * 120.00045 * 266.64721 * 3 2 1 13 13 O 1.21635 * 120.00215 * 180.02562 * 12 3 2 14 14 C 1.47294 * 120.00128 * 0.02562 * 12 3 2 15 15 C 1.40026 * 120.21879 * 269.99968 * 14 12 3 16 16 F 1.35104 * 120.08166 * 359.97438 * 15 14 12 17 17 C 1.38111 * 119.83064 * 179.97438 * 15 14 12 18 18 C 1.38435 * 120.27820 * 359.97438 * 17 15 14 19 19 C 1.38153 * 120.44123 * 0.02562 * 18 17 15 20 20 C 1.38600 * 120.16357 * 359.74440 * 19 18 17 21 21 O 1.35662 * 120.14214 * 180.25335 * 20 19 18 22 22 C 1.42904 * 116.99944 * 0.23666 * 21 20 19 23 23 H 1.08996 * 109.47428 * 55.53855 * 1 2 3 24 24 H 1.09006 * 109.47016 * 175.53930 * 1 2 3 25 25 H 1.09000 * 109.46871 * 295.53724 * 1 2 3 26 26 H 1.09002 * 109.46964 * 240.00023 * 2 1 3 27 27 H 1.09002 * 109.47225 * 120.00217 * 2 1 3 28 28 H 0.96995 * 119.99738 * 179.97438 * 7 6 4 29 29 H 1.08008 * 119.86036 * 179.97438 * 17 15 14 30 30 H 1.08003 * 119.77753 * 180.02562 * 18 17 15 31 31 H 1.08001 * 119.91578 * 179.97438 * 19 18 17 32 32 H 1.08992 * 109.47047 * 180.02562 * 22 21 20 33 33 H 1.09007 * 109.46445 * 299.99699 * 22 21 20 34 34 H 1.08998 * 109.47025 * 59.99374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1812 2.0497 1.1838 5 1 1.4075 2.0116 1.9363 6 6 3.3400 2.7821 1.4146 7 7 3.3566 3.7091 2.3457 8 14 4.8733 2.4484 0.4013 9 1 4.9300 3.3988 -0.7383 10 1 6.0773 2.6240 1.2527 11 1 4.8316 1.0570 -0.1162 12 6 2.3073 1.9938 -1.1652 13 8 2.7132 3.1404 -1.1652 14 6 2.1316 1.2748 -2.4386 15 6 3.1862 0.5277 -2.9775 16 9 4.3707 0.4639 -2.3306 17 6 3.0126 -0.1437 -4.1718 18 6 1.8004 -0.0815 -4.8376 19 6 0.7523 0.6521 -4.3163 20 6 0.9050 1.3292 -3.1166 21 8 -0.1262 2.0453 -2.6025 22 6 -1.3451 2.0546 -3.3484 23 1 -0.3634 0.5815 -0.8473 24 1 -0.3633 -1.0246 -0.0799 25 1 -0.3633 0.4430 0.9273 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1653 4.2198 2.5070 29 1 3.8259 -0.7198 -4.5881 30 1 1.6734 -0.6101 -5.7709 31 1 -0.1895 0.6952 -4.8431 32 1 -2.0849 2.6627 -2.8279 33 1 -1.1622 2.4734 -4.3380 34 1 -1.7176 1.0351 -3.4484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088080463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:06 Heat of formation + Delta-G solvation = -95.383407 kcal Electronic energy + Delta-G solvation = -21514.901897 eV Core-core repulsion = 18134.768682 eV Total energy + Delta-G solvation = -3380.133214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.11889 -41.58603 -40.16246 -38.15361 -36.79714 -34.52544 -32.27658 -31.33211 -30.95231 -28.27088 -27.12293 -24.89249 -23.71577 -23.18119 -21.53673 -19.83190 -19.02382 -18.23503 -17.82774 -17.34254 -17.12189 -16.88066 -16.47530 -16.24244 -15.65565 -15.58606 -15.47474 -14.78038 -14.66852 -14.17255 -14.02027 -13.83126 -13.39887 -13.33228 -12.90369 -12.78363 -12.68566 -12.36909 -12.19035 -12.08155 -11.97825 -11.83226 -10.88704 -10.63540 -9.87706 -9.62348 -9.34067 -8.52201 -6.27691 -0.06958 0.21074 1.11536 1.31593 1.38363 1.79173 2.15174 2.34153 2.44126 2.64957 3.01616 3.30742 3.65764 3.91639 3.99812 4.10425 4.15276 4.30354 4.39353 4.43913 4.47433 4.60763 4.74553 4.82078 4.93357 5.02915 5.05208 5.12491 5.25873 5.39803 5.65337 5.67960 5.81813 6.35870 6.66969 6.83189 7.24046 7.79972 8.57559 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.009798 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.802554 B = 2857.139479 C = 3479.435299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.096 3.904 3 N -0.462 5.462 4 C -0.344 4.344 5 H 0.073 0.927 6 C 0.050 3.950 7 N -0.904 5.904 8 Si 0.939 3.061 9 H -0.292 1.292 10 H -0.291 1.291 11 H -0.249 1.249 12 C 0.507 3.493 13 O -0.597 6.597 14 C -0.213 4.213 15 C 0.121 3.879 16 F -0.150 7.150 17 C -0.182 4.182 18 C -0.023 4.023 19 C -0.205 4.205 20 C 0.176 3.824 21 O -0.335 6.335 22 C 0.014 3.986 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.274 0.726 29 H 0.169 0.831 30 H 0.193 0.807 31 H 0.181 0.819 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -13.558 -18.303 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 N -0.183 5.183 4 C -0.471 4.471 5 H 0.090 0.910 6 C -0.155 4.155 7 N -0.541 5.541 8 Si 0.768 3.232 9 H -0.219 1.219 10 H -0.219 1.219 11 H -0.172 1.172 12 C 0.297 3.703 13 O -0.482 6.482 14 C -0.218 4.218 15 C 0.101 3.899 16 F -0.129 7.129 17 C -0.201 4.201 18 C -0.040 4.040 19 C -0.223 4.223 20 C 0.129 3.871 21 O -0.248 6.248 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.210 0.790 31 H 0.198 0.802 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.370 -12.780 -17.934 23.559 hybrid contribution 1.107 0.716 0.518 1.416 sum -7.263 -12.064 -17.416 22.397 Atomic orbital electron populations 1.22067 0.94279 1.02935 1.01820 1.21772 0.96250 0.82433 1.02170 1.43758 1.58640 1.12120 1.03806 1.18694 1.03168 1.30731 0.94515 0.90980 1.25891 1.00853 0.93430 0.95321 1.69813 1.29591 1.19916 1.34762 0.85917 0.78884 0.80027 0.78399 1.21926 1.21921 1.17210 1.18541 0.81246 0.85914 0.84599 1.90604 1.50057 1.20288 1.87240 1.19363 0.95587 1.07607 0.99217 1.17972 0.79808 0.98613 0.93467 1.91512 1.44908 1.94815 1.81663 1.21350 1.02073 1.03482 0.93189 1.21446 0.89210 0.93914 0.99450 1.21686 1.03659 1.02069 0.94920 1.18798 0.85504 0.90656 0.92190 1.86179 1.22023 1.66296 1.50344 1.23508 0.82506 1.04439 0.97483 0.92493 0.88760 0.94019 0.90987 0.90571 0.91689 0.81351 0.78979 0.80215 0.87505 0.90500 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 10.23 71.98 0.74 -4.37 16 2 C 0.10 3.90 5.97 86.38 0.52 4.41 16 3 N -0.46 -24.69 2.10 -639.40 -1.34 -26.03 16 4 C -0.34 -21.40 9.63 84.08 0.81 -20.59 16 5 H 0.07 4.68 8.06 -2.91 -0.02 4.66 16 6 C 0.05 3.25 4.84 84.94 0.41 3.66 16 7 N -0.90 -60.30 13.96 21.67 0.30 -60.00 16 8 Si 0.94 55.04 24.54 68.60 1.68 56.73 16 9 H -0.29 -18.57 6.49 99.48 0.65 -17.92 16 10 H -0.29 -16.08 7.11 99.48 0.71 -15.37 16 11 H -0.25 -13.70 5.86 99.48 0.58 -13.12 16 12 C 0.51 27.59 4.51 86.63 0.39 27.99 16 13 O -0.60 -38.80 13.14 -4.14 -0.05 -38.85 16 14 C -0.21 -8.88 3.88 -19.97 -0.08 -8.96 16 15 C 0.12 4.43 6.86 22.67 0.16 4.59 16 16 F -0.15 -6.46 15.11 44.97 0.68 -5.78 16 17 C -0.18 -4.21 10.00 22.29 0.22 -3.98 16 18 C -0.02 -0.36 10.03 22.30 0.22 -0.13 16 19 C -0.21 -3.96 9.03 22.34 0.20 -3.76 16 20 C 0.18 5.63 6.27 22.85 0.14 5.78 16 21 O -0.34 -11.12 8.38 -89.78 -0.75 -11.87 16 22 C 0.01 0.26 9.81 113.37 1.11 1.37 16 23 H 0.06 1.93 5.98 -2.39 -0.01 1.91 16 24 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.63 6.43 -2.39 -0.02 2.61 16 27 H 0.08 3.00 8.07 -2.39 -0.02 2.98 16 28 H 0.27 17.20 8.31 -92.71 -0.77 16.43 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.18 1.87 6.29 -2.91 -0.02 1.85 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.05 7.65 -2.38 -0.02 1.03 16 34 H 0.09 1.02 7.67 -2.39 -0.02 1.01 16 Total: -1.00 -90.77 286.72 6.30 -84.48 By element: Atomic # 1 Polarization: -5.60 SS G_CDS: 0.93 Total: -4.67 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 4.85 Total: 5.99 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.04 Total: -86.03 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.81 Total: -50.72 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.68 Total: -5.78 kcal Atomic # 14 Polarization: 55.04 SS G_CDS: 1.68 Total: 56.73 kcal Total: -90.77 6.30 -84.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.906 kcal (2) G-P(sol) polarization free energy of solvation -90.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds