Wall clock time and date at job start Mon Mar 30 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35658 * 117.00104 * 2 1 4 4 C 1.38638 * 120.13590 * 0.23880 * 3 2 1 5 5 C 1.38135 * 120.15359 * 180.29544 * 4 3 2 6 6 C 1.38413 * 120.43472 * 359.71715 * 5 4 3 7 7 C 1.38138 * 120.27305 * 0.02562 * 6 5 4 8 8 F 1.35096 * 120.08138 * 179.97438 * 7 6 5 9 9 C 1.39968 * 119.83412 * 359.97438 * 7 6 5 10 10 C 1.47391 * 120.20948 * 179.97438 * 9 7 6 11 11 O 1.21601 * 119.99441 * 90.00416 * 10 9 7 12 12 N 1.34768 * 120.00240 * 270.00045 * 10 9 7 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46845 * 35.00845 * 13 12 10 15 15 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 16 16 C 1.50706 * 109.47187 * 154.99900 * 13 12 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46754 * 90.00468 * 20 18 16 22 22 H 1.48498 * 109.47278 * 210.00299 * 20 18 16 23 23 H 1.48498 * 109.47109 * 330.00728 * 20 18 16 24 24 H 1.09007 * 109.46846 * 59.99857 * 1 2 3 25 25 H 1.09003 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47413 * 299.99867 * 1 2 3 27 27 H 1.08002 * 119.91871 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.78303 * 179.69603 * 5 4 3 29 29 H 1.08002 * 119.86263 * 180.02562 * 6 5 4 30 30 H 0.97001 * 120.00396 * 0.02562 * 12 10 9 31 31 H 1.09002 * 109.47153 * 59.99757 * 15 13 12 32 32 H 1.09001 * 109.46832 * 299.99948 * 15 13 12 33 33 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 34 34 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3732 0.0050 5 6 1.9193 3.6042 -0.0012 6 6 3.3009 3.6875 -0.0065 7 6 4.0679 2.5386 -0.0062 8 9 5.4161 2.6245 -0.0119 9 6 3.4447 1.2854 0.0000 10 6 4.2550 0.0542 -0.0002 11 8 4.5938 -0.4508 1.0529 12 7 4.6202 -0.5119 -1.1674 13 6 5.4261 -1.7354 -1.1675 14 1 5.1375 -2.3606 -0.3227 15 6 6.9073 -1.3706 -1.0496 16 6 5.1950 -2.4890 -2.4520 17 1 4.5161 -2.0956 -3.1942 18 6 5.8511 -3.6799 -2.6801 19 7 6.6782 -4.1587 -1.7767 20 14 5.5652 -4.6136 -4.2726 21 1 6.5464 -4.1643 -5.2928 22 1 5.7344 -6.0689 -4.0304 23 1 4.1878 -4.3498 -4.7607 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2140 2.3177 0.0093 28 1 1.3274 4.5075 -0.0022 29 1 3.7813 4.6548 -0.0108 30 1 4.3502 -0.1090 -2.0074 31 1 7.0744 -0.8255 -0.1206 32 1 7.1958 -0.7453 -1.8946 33 1 7.5068 -2.2809 -1.0493 34 1 7.1395 -4.9967 -1.9370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088080468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:55 Heat of formation + Delta-G solvation = -93.974828 kcal Electronic energy + Delta-G solvation = -20293.402687 eV Core-core repulsion = 16913.330554 eV Total energy + Delta-G solvation = -3380.072134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.86679 -40.33541 -38.44459 -37.17376 -34.70352 -32.38198 -31.29902 -30.01777 -28.65795 -27.42480 -25.20399 -23.98776 -22.28194 -21.17537 -19.56483 -18.54947 -17.56785 -17.01978 -16.09187 -16.02623 -15.87678 -15.41503 -15.15421 -14.95690 -14.67044 -14.18091 -13.63479 -13.18281 -12.79668 -12.51992 -12.48609 -12.29975 -11.92507 -11.58395 -11.35777 -11.15741 -11.07916 -10.89649 -10.68294 -10.29448 -10.18340 -9.16537 -8.98833 -8.84912 -8.50590 -8.39903 -7.85862 -6.07158 -4.16017 0.92388 1.14991 3.02856 3.27425 3.31549 3.34079 3.36416 3.39193 4.02873 4.30433 4.41284 4.61000 4.84309 4.95919 5.03618 5.04352 5.18568 5.24869 5.39792 5.42251 5.77616 5.95271 5.99302 6.12913 6.56837 6.89804 7.04740 7.20334 7.21890 7.50705 7.61461 7.74644 7.97539 8.20059 8.70039 8.82105 9.14048 9.50727 10.99010 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.005678 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.286298 B = 4930.134861 C = 5596.562333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.189 3.811 4 C -0.226 4.226 5 C -0.043 4.043 6 C -0.197 4.197 7 C 0.169 3.831 8 F -0.123 7.123 9 C -0.186 4.186 10 C 0.560 3.440 11 O -0.542 6.542 12 N -0.694 5.694 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.389 0.611 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 14.593 1.170 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.141 3.859 4 C -0.244 4.244 5 C -0.061 4.061 6 C -0.216 4.216 7 C 0.149 3.851 8 F -0.101 7.101 9 C -0.191 4.191 10 C 0.343 3.657 11 O -0.420 6.420 12 N -0.340 5.340 13 C 0.163 3.837 14 H 0.068 0.932 15 C -0.206 4.206 16 C -0.569 4.569 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.730 3.270 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.221 0.779 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.791 13.804 1.945 18.258 hybrid contribution -0.253 -0.142 -1.251 1.285 sum -12.043 13.662 0.693 18.225 Atomic orbital electron populations 1.23164 0.77792 1.04616 1.01274 1.86203 1.21717 1.25798 1.87145 1.18639 0.89981 0.85036 0.92254 1.21210 1.00458 0.91808 1.10964 1.20793 0.93407 0.97331 0.94582 1.20939 0.94298 0.97394 1.08962 1.17316 0.77255 0.92283 0.98231 1.91565 1.28560 1.96868 1.93119 1.19503 0.92160 0.94644 1.12830 1.17626 0.79770 0.83042 0.85303 1.90760 1.56327 1.63460 1.31455 1.46490 1.52659 1.28528 1.06335 1.18798 0.86830 0.79882 0.98225 0.93233 1.22081 0.99939 1.01709 0.96858 1.21205 1.26735 1.06361 1.02626 0.92073 1.24882 0.94779 0.97034 0.97021 1.69906 1.27753 1.20498 1.33976 0.86441 0.78554 0.78960 0.83082 1.20556 1.21078 1.19892 0.92322 0.87729 0.92419 0.84452 0.84557 0.84211 0.77871 0.96567 0.95393 0.89058 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.71 9.95 -18.67 -0.19 -4.89 16 3 C 0.19 2.88 6.70 -38.70 -0.26 2.62 16 4 C -0.23 -2.47 9.03 -39.47 -0.36 -2.82 16 5 C -0.04 -0.41 10.02 -39.55 -0.40 -0.81 16 6 C -0.20 -2.28 10.01 -39.55 -0.40 -2.68 16 7 C 0.17 2.69 7.29 -38.97 -0.28 2.41 16 8 F -0.12 -2.16 16.83 2.25 0.04 -2.12 16 9 C -0.19 -3.39 5.64 -104.79 -0.59 -3.98 16 10 C 0.56 12.86 6.39 -12.54 -0.08 12.78 16 11 O -0.54 -14.61 16.77 5.28 0.09 -14.52 16 12 N -0.69 -16.09 5.07 -56.02 -0.28 -16.37 16 13 C 0.26 7.13 2.56 -69.08 -0.18 6.96 16 14 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 15 C -0.15 -3.88 9.26 37.16 0.34 -3.54 16 16 C -0.53 -14.60 8.73 -34.44 -0.30 -14.90 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 19 N -0.88 -25.51 11.32 55.43 0.63 -24.88 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 27 H 0.14 1.07 6.29 -52.49 -0.33 0.74 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.39 8.02 8.52 -40.82 -0.35 7.67 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -33.82 301.90 -5.62 -39.44 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.84 Total: 3.75 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.60 Total: -0.99 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.34 Total: -41.25 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.10 Total: -19.41 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.82 -5.62 -39.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.533 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds