Wall clock time and date at job start Mon Mar 30 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35658 * 117.00104 * 2 1 4 4 C 1.38638 * 120.13590 * 0.23880 * 3 2 1 5 5 C 1.38135 * 120.15359 * 180.29544 * 4 3 2 6 6 C 1.38413 * 120.43472 * 359.71715 * 5 4 3 7 7 C 1.38138 * 120.27305 * 0.02562 * 6 5 4 8 8 F 1.35096 * 120.08138 * 179.97438 * 7 6 5 9 9 C 1.39968 * 119.83412 * 359.97438 * 7 6 5 10 10 C 1.47391 * 120.20948 * 179.97438 * 9 7 6 11 11 O 1.21601 * 119.99441 * 90.00416 * 10 9 7 12 12 N 1.34768 * 120.00240 * 270.00045 * 10 9 7 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46845 * 35.00845 * 13 12 10 15 15 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 16 16 C 1.50706 * 109.47187 * 154.99900 * 13 12 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46754 * 90.00468 * 20 18 16 22 22 H 1.48498 * 109.47278 * 210.00299 * 20 18 16 23 23 H 1.48498 * 109.47109 * 330.00728 * 20 18 16 24 24 H 1.09007 * 109.46846 * 59.99857 * 1 2 3 25 25 H 1.09003 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47413 * 299.99867 * 1 2 3 27 27 H 1.08002 * 119.91871 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.78303 * 179.69603 * 5 4 3 29 29 H 1.08002 * 119.86263 * 180.02562 * 6 5 4 30 30 H 0.97001 * 120.00396 * 0.02562 * 12 10 9 31 31 H 1.09002 * 109.47153 * 59.99757 * 15 13 12 32 32 H 1.09001 * 109.46832 * 299.99948 * 15 13 12 33 33 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 34 34 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3732 0.0050 5 6 1.9193 3.6042 -0.0012 6 6 3.3009 3.6875 -0.0065 7 6 4.0679 2.5386 -0.0062 8 9 5.4161 2.6245 -0.0119 9 6 3.4447 1.2854 0.0000 10 6 4.2550 0.0542 -0.0002 11 8 4.5938 -0.4508 1.0529 12 7 4.6202 -0.5119 -1.1674 13 6 5.4261 -1.7354 -1.1675 14 1 5.1375 -2.3606 -0.3227 15 6 6.9073 -1.3706 -1.0496 16 6 5.1950 -2.4890 -2.4520 17 1 4.5161 -2.0956 -3.1942 18 6 5.8511 -3.6799 -2.6801 19 7 6.6782 -4.1587 -1.7767 20 14 5.5652 -4.6136 -4.2726 21 1 6.5464 -4.1643 -5.2928 22 1 5.7344 -6.0689 -4.0304 23 1 4.1878 -4.3498 -4.7607 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2140 2.3177 0.0093 28 1 1.3274 4.5075 -0.0022 29 1 3.7813 4.6548 -0.0108 30 1 4.3502 -0.1090 -2.0074 31 1 7.0744 -0.8255 -0.1206 32 1 7.1958 -0.7453 -1.8946 33 1 7.5068 -2.2809 -1.0493 34 1 7.1395 -4.9967 -1.9370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088080468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:54 Heat of formation + Delta-G solvation = -118.569462 kcal Electronic energy + Delta-G solvation = -20294.469191 eV Core-core repulsion = 16913.330554 eV Total energy + Delta-G solvation = -3381.138637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09972 -41.50291 -40.13047 -38.20381 -36.77404 -34.40253 -32.61278 -30.98309 -30.58091 -28.25845 -27.39665 -25.32246 -23.28245 -22.94525 -21.42337 -19.85735 -19.04001 -18.13399 -17.80704 -17.42525 -17.09681 -16.88009 -16.47663 -16.42104 -15.79171 -15.62062 -15.44748 -14.83144 -14.48144 -13.91205 -13.73571 -13.42509 -13.40609 -13.05166 -12.95427 -12.77707 -12.74453 -12.34378 -12.29740 -12.16139 -12.00546 -11.17735 -10.96003 -10.63624 -9.98396 -9.88637 -9.39285 -8.20141 -6.38803 -0.12009 0.17399 1.42831 1.44795 1.55332 1.57397 2.09970 2.28682 2.43149 2.56403 3.09585 3.26371 3.67343 3.90635 3.94545 4.07623 4.27468 4.36251 4.41034 4.65518 4.72667 4.80141 4.84956 4.99700 5.02697 5.08773 5.24413 5.35040 5.52855 5.59534 5.64427 5.81935 6.02544 6.28498 6.66258 6.79734 7.24099 7.39912 8.86915 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.005678 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.286298 B = 4930.134861 C = 5596.562333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.342 6.342 3 C 0.175 3.825 4 C -0.208 4.208 5 C -0.018 4.018 6 C -0.183 4.183 7 C 0.142 3.858 8 F -0.145 7.145 9 C -0.230 4.230 10 C 0.559 3.441 11 O -0.597 6.597 12 N -0.691 5.691 13 C 0.270 3.730 14 H -0.003 1.003 15 C -0.133 4.133 16 C -0.548 4.548 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.264 1.264 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.179 0.821 28 H 0.192 0.808 29 H 0.172 0.828 30 H 0.402 0.598 31 H 0.007 0.993 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 17.180 -0.465 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.255 6.255 3 C 0.128 3.872 4 C -0.227 4.227 5 C -0.035 4.035 6 C -0.202 4.202 7 C 0.122 3.878 8 F -0.123 7.123 9 C -0.234 4.234 10 C 0.345 3.655 11 O -0.479 6.479 12 N -0.337 5.337 13 C 0.167 3.833 14 H 0.015 0.985 15 C -0.191 4.191 16 C -0.586 4.586 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.803 3.197 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.188 1.188 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.196 0.804 28 H 0.209 0.791 29 H 0.189 0.811 30 H 0.236 0.764 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.650 16.429 0.288 22.015 hybrid contribution 0.521 -0.885 -0.678 1.231 sum -14.130 15.544 -0.390 21.010 Atomic orbital electron populations 1.23519 0.74935 1.05775 1.03586 1.86142 1.24896 1.27044 1.87400 1.18868 0.89055 0.86453 0.92838 1.21687 1.02167 0.90434 1.08376 1.21475 0.92697 0.98743 0.90632 1.21378 0.95136 0.96848 1.06800 1.17743 0.76761 0.93008 1.00256 1.91503 1.30267 1.96958 1.93581 1.19275 0.93272 0.92816 1.18072 1.18413 0.78978 0.84103 0.83973 1.90699 1.58458 1.65610 1.33160 1.46296 1.52402 1.27569 1.07480 1.18437 0.87448 0.80945 0.96475 0.98496 1.21901 0.99558 1.00773 0.96899 1.21472 1.27349 1.07058 1.02720 0.91006 1.25866 0.94156 0.97834 1.00751 1.70057 1.28471 1.20950 1.36124 0.85245 0.78998 0.77139 0.78339 1.19422 1.20868 1.18790 0.89745 0.87466 0.90119 0.80411 0.79052 0.81066 0.76373 0.97381 0.94033 0.90904 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -10.81 9.95 -89.74 -0.89 -11.70 16 3 C 0.18 5.17 6.70 22.84 0.15 5.32 16 4 C -0.21 -3.62 9.03 22.34 0.20 -3.41 16 5 C -0.02 -0.24 10.02 22.29 0.22 -0.02 16 6 C -0.18 -3.57 10.01 22.29 0.22 -3.35 16 7 C 0.14 4.48 7.29 22.67 0.17 4.65 16 8 F -0.14 -5.26 16.83 44.97 0.76 -4.50 16 9 C -0.23 -8.54 5.64 -19.97 -0.11 -8.65 16 10 C 0.56 27.39 6.39 86.65 0.55 27.94 16 11 O -0.60 -34.88 16.77 -4.03 -0.07 -34.95 16 12 N -0.69 -33.87 5.07 -449.42 -2.28 -36.14 16 13 C 0.27 15.46 2.56 44.25 0.11 15.57 16 14 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 15 C -0.13 -7.38 9.26 71.98 0.67 -6.72 16 16 C -0.55 -30.94 8.73 25.60 0.22 -30.72 16 17 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 18 C 0.01 0.78 5.30 84.65 0.45 1.23 16 19 N -0.92 -54.69 11.32 21.45 0.24 -54.45 16 20 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 24 H 0.08 0.99 7.67 -2.38 -0.02 0.97 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 0.99 7.65 -2.39 -0.02 0.97 16 27 H 0.18 1.62 6.29 -2.91 -0.02 1.61 16 28 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 29 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.40 17.29 8.52 -92.71 -0.79 16.50 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.04 2.12 8.14 -2.39 -0.02 2.11 16 33 H 0.07 4.31 6.07 -2.38 -0.01 4.30 16 34 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -81.00 301.90 4.11 -76.90 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.34 Total: 16.30 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 3.97 Total: 3.22 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -2.03 Total: -90.59 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.96 Total: -46.65 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.76 Total: -4.50 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -81.00 4.11 -76.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.672 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds