Wall clock time and date at job start Mon Mar 30 2020 00:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35648 * 117.00056 * 2 1 4 4 C 1.38636 * 120.14050 * 0.23535 * 3 2 1 5 5 C 1.38135 * 120.15508 * 180.30318 * 4 3 2 6 6 C 1.38411 * 120.43490 * 359.71254 * 5 4 3 7 7 C 1.38126 * 120.27310 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08316 * 179.97438 * 7 6 5 9 9 C 1.39961 * 119.83705 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.21507 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99971 * 89.99809 * 10 9 7 12 12 N 1.34777 * 120.00073 * 270.00320 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27558 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99965 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00490 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99620 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46847 * 90.00413 * 19 17 15 21 21 H 1.48502 * 109.46888 * 210.00098 * 19 17 15 22 22 H 1.48496 * 109.47530 * 329.99981 * 19 17 15 23 23 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46894 * 300.00095 * 1 2 3 25 25 H 1.08998 * 109.46664 * 60.00385 * 1 2 3 26 26 H 1.08000 * 119.91728 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.77597 * 179.69686 * 5 4 3 28 28 H 1.07998 * 119.86205 * 180.02562 * 6 5 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 30 30 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 31 31 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 32 32 H 1.09004 * 109.47066 * 299.99732 * 14 13 12 33 33 H 1.09000 * 109.47665 * 59.99541 * 14 13 12 34 34 H 0.96998 * 120.00373 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3732 0.0049 5 6 1.9195 3.6041 -0.0014 6 6 3.3011 3.6874 -0.0067 7 6 4.0679 2.5386 -0.0062 8 9 5.4162 2.6243 -0.0119 9 6 3.4448 1.2854 0.0001 10 6 4.2550 0.0541 0.0001 11 8 4.5939 -0.4508 1.0532 12 7 4.6203 -0.5122 -1.1671 13 6 5.4204 -1.7394 -1.1670 14 6 5.6897 -2.1726 -2.6095 15 6 6.5134 -3.4346 -2.6095 16 1 6.8150 -3.8826 -1.6743 17 6 6.8819 -4.0173 -3.8035 18 7 7.6003 -5.1189 -3.8035 19 14 6.3597 -3.2428 -5.4212 20 1 7.3934 -2.2721 -5.8617 21 1 6.2051 -4.3024 -6.4501 22 1 5.0653 -2.5385 -5.2377 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2141 2.3177 0.0092 27 1 1.3275 4.5074 -0.0025 28 1 3.7815 4.6547 -0.0112 29 1 4.3497 -0.1096 -2.0071 30 1 6.3677 -1.5554 -0.6600 31 1 4.8768 -2.5277 -0.6464 32 1 4.7425 -2.3566 -3.1165 33 1 6.2334 -1.3844 -3.1302 34 1 7.8599 -5.5287 -4.6435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088080475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:12 Heat of formation + Delta-G solvation = -96.800899 kcal Electronic energy + Delta-G solvation = -19747.837303 eV Core-core repulsion = 16367.642622 eV Total energy + Delta-G solvation = -3380.194681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11233 -40.61421 -38.86296 -37.42024 -34.92737 -32.80018 -31.69758 -30.24401 -29.88504 -27.67920 -25.36437 -23.59307 -22.51432 -20.81083 -20.49244 -18.73601 -17.44055 -17.27993 -16.88393 -16.26866 -16.25236 -15.64431 -15.40389 -15.00073 -14.90597 -14.61368 -14.15405 -13.54205 -13.29908 -12.92321 -12.72131 -12.70166 -12.56026 -12.05616 -11.61637 -11.46067 -11.37377 -11.16866 -10.36559 -10.31561 -9.94296 -9.58770 -9.28395 -9.13134 -8.63824 -8.61452 -8.49825 -6.08217 -4.08015 0.67591 0.92277 2.76642 2.84623 3.14464 3.27709 3.35012 3.36723 3.56134 4.06164 4.38548 4.40518 4.61386 4.71681 4.80020 4.85418 4.95397 5.00699 5.22595 5.24824 5.52609 5.69425 5.74133 5.92530 6.15068 6.25261 6.33266 6.60137 6.76598 6.95384 7.16902 7.27160 7.69422 7.89376 8.45770 8.54618 8.96374 9.52029 11.04887 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.004599 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.420006 B = 6086.721304 C = 6417.521037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.190 3.810 4 C -0.224 4.224 5 C -0.038 4.038 6 C -0.195 4.195 7 C 0.172 3.828 8 F -0.122 7.122 9 C -0.193 4.193 10 C 0.567 3.433 11 O -0.532 6.532 12 N -0.712 5.712 13 C 0.130 3.870 14 C -0.022 4.022 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.106 0.894 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.397 0.603 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.018 0.982 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.734 19.237 5.111 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.143 3.857 4 C -0.243 4.243 5 C -0.056 4.056 6 C -0.214 4.214 7 C 0.152 3.848 8 F -0.100 7.100 9 C -0.198 4.198 10 C 0.351 3.649 11 O -0.409 6.409 12 N -0.361 5.361 13 C 0.008 3.992 14 C -0.060 4.060 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.124 0.876 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.246 18.483 5.745 25.270 hybrid contribution -0.326 0.642 -1.338 1.520 sum -16.572 19.125 4.407 25.687 Atomic orbital electron populations 1.23195 0.77417 1.04777 1.01513 1.86157 1.22058 1.25853 1.87189 1.18607 0.89835 0.85133 0.92162 1.21237 1.00622 0.91738 1.10682 1.20854 0.93433 0.97466 0.93868 1.20975 0.94313 0.97515 1.08593 1.17297 0.77270 0.92231 0.98011 1.91577 1.28496 1.96872 1.93089 1.19278 0.92036 0.94098 1.14387 1.17647 0.79483 0.83120 0.84699 1.90795 1.55335 1.63448 1.31295 1.46277 1.53973 1.28378 1.07480 1.21567 0.93969 0.83397 1.00286 1.19799 0.97356 0.97542 0.91272 1.20919 1.32720 1.07417 0.94930 0.90570 1.24986 0.94481 0.94653 0.99098 1.69901 1.37415 1.19397 1.27017 0.86762 0.79630 0.79180 0.83586 1.20196 1.21274 1.19086 0.87602 0.92229 0.92151 0.84241 0.84317 0.83965 0.76987 0.91748 0.91697 0.95945 0.96377 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.92 9.95 -18.64 -0.19 -4.10 16 3 C 0.19 2.41 6.70 -38.70 -0.26 2.15 16 4 C -0.22 -1.97 9.03 -39.47 -0.36 -2.33 16 5 C -0.04 -0.29 10.02 -39.56 -0.40 -0.69 16 6 C -0.19 -1.86 10.00 -39.56 -0.40 -2.26 16 7 C 0.17 2.31 7.29 -38.98 -0.28 2.02 16 8 F -0.12 -1.84 16.83 2.25 0.04 -1.80 16 9 C -0.19 -2.94 5.64 -104.79 -0.59 -3.53 16 10 C 0.57 10.86 6.43 -12.53 -0.08 10.78 16 11 O -0.53 -12.20 17.11 5.27 0.09 -12.11 16 12 N -0.71 -13.29 5.55 -61.40 -0.34 -13.63 16 13 C 0.13 2.82 5.61 -4.04 -0.02 2.80 16 14 C -0.02 -0.52 4.16 -27.89 -0.12 -0.64 16 15 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 16 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 19 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 23 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 25 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 26 H 0.14 0.81 6.29 -52.49 -0.33 0.48 16 27 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 28 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.40 6.39 8.46 -40.82 -0.35 6.04 16 30 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 33 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -35.09 303.12 -5.61 -40.70 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.94 Total: 0.42 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.94 Total: -3.84 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.43 Total: -40.55 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.10 Total: -16.21 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.09 -5.61 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.102 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds