Wall clock time and date at job start Mon Mar 30 2020 00:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35648 * 117.00056 * 2 1 4 4 C 1.38636 * 120.14050 * 0.23535 * 3 2 1 5 5 C 1.38135 * 120.15508 * 180.30318 * 4 3 2 6 6 C 1.38411 * 120.43490 * 359.71254 * 5 4 3 7 7 C 1.38126 * 120.27310 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08316 * 179.97438 * 7 6 5 9 9 C 1.39961 * 119.83705 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.21507 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99971 * 89.99809 * 10 9 7 12 12 N 1.34777 * 120.00073 * 270.00320 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27558 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99965 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00490 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99620 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46847 * 90.00413 * 19 17 15 21 21 H 1.48502 * 109.46888 * 210.00098 * 19 17 15 22 22 H 1.48496 * 109.47530 * 329.99981 * 19 17 15 23 23 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46894 * 300.00095 * 1 2 3 25 25 H 1.08998 * 109.46664 * 60.00385 * 1 2 3 26 26 H 1.08000 * 119.91728 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.77597 * 179.69686 * 5 4 3 28 28 H 1.07998 * 119.86205 * 180.02562 * 6 5 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 30 30 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 31 31 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 32 32 H 1.09004 * 109.47066 * 299.99732 * 14 13 12 33 33 H 1.09000 * 109.47665 * 59.99541 * 14 13 12 34 34 H 0.96998 * 120.00373 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3732 0.0049 5 6 1.9195 3.6041 -0.0014 6 6 3.3011 3.6874 -0.0067 7 6 4.0679 2.5386 -0.0062 8 9 5.4162 2.6243 -0.0119 9 6 3.4448 1.2854 0.0001 10 6 4.2550 0.0541 0.0001 11 8 4.5939 -0.4508 1.0532 12 7 4.6203 -0.5122 -1.1671 13 6 5.4204 -1.7394 -1.1670 14 6 5.6897 -2.1726 -2.6095 15 6 6.5134 -3.4346 -2.6095 16 1 6.8150 -3.8826 -1.6743 17 6 6.8819 -4.0173 -3.8035 18 7 7.6003 -5.1189 -3.8035 19 14 6.3597 -3.2428 -5.4212 20 1 7.3934 -2.2721 -5.8617 21 1 6.2051 -4.3024 -6.4501 22 1 5.0653 -2.5385 -5.2377 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2141 2.3177 0.0092 27 1 1.3275 4.5074 -0.0025 28 1 3.7815 4.6547 -0.0112 29 1 4.3497 -0.1096 -2.0071 30 1 6.3677 -1.5554 -0.6600 31 1 4.8768 -2.5277 -0.6464 32 1 4.7425 -2.3566 -3.1165 33 1 6.2334 -1.3844 -3.1302 34 1 7.8599 -5.5287 -4.6435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088080475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:11 Heat of formation + Delta-G solvation = -123.027176 kcal Electronic energy + Delta-G solvation = -19748.974560 eV Core-core repulsion = 16367.642622 eV Total energy + Delta-G solvation = -3381.331938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.13387 -41.57981 -40.23043 -38.23238 -36.72824 -34.85227 -32.90548 -31.59215 -31.00912 -28.31864 -27.12452 -24.83170 -23.31172 -22.72481 -21.85793 -19.68210 -19.04432 -18.60456 -18.19441 -17.34016 -17.12439 -16.73071 -16.49191 -16.31342 -16.24075 -16.05341 -15.67314 -14.97707 -14.84688 -14.59002 -13.89014 -13.45357 -13.42155 -13.39855 -13.09483 -12.81804 -12.39116 -12.25453 -12.21523 -12.02739 -11.79241 -11.56822 -11.11324 -10.81270 -10.20546 -10.03171 -9.42451 -8.32268 -6.39996 -0.16585 0.14461 1.37058 1.37324 1.39685 1.51172 2.04171 2.11387 2.34958 2.43909 3.02322 3.22593 3.53333 3.85361 3.89700 4.02694 4.25253 4.27144 4.34087 4.36096 4.40685 4.67109 4.72215 4.76664 4.97476 5.02595 5.08191 5.23475 5.31248 5.33552 5.57889 5.60459 6.18700 6.23136 6.40955 6.66700 7.05758 7.24452 8.84612 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.004599 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.420006 B = 6086.721304 C = 6417.521037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.339 6.339 3 C 0.178 3.822 4 C -0.209 4.209 5 C -0.017 4.017 6 C -0.184 4.184 7 C 0.145 3.855 8 F -0.143 7.143 9 C -0.231 4.231 10 C 0.567 3.433 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.144 3.856 14 C -0.010 4.010 15 C -0.541 4.541 16 H 0.029 0.971 17 C 0.007 3.993 18 N -0.949 5.949 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.240 1.240 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.178 0.822 27 H 0.189 0.811 28 H 0.170 0.830 29 H 0.412 0.588 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.021 22.979 3.482 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.131 3.869 4 C -0.227 4.227 5 C -0.034 4.034 6 C -0.203 4.203 7 C 0.125 3.875 8 F -0.122 7.122 9 C -0.235 4.235 10 C 0.353 3.647 11 O -0.464 6.464 12 N -0.354 5.354 13 C 0.020 3.980 14 C -0.048 4.048 15 C -0.579 4.579 16 H 0.047 0.953 17 C -0.190 4.190 18 N -0.588 5.588 19 Si 0.780 3.220 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.163 1.163 23 H 0.127 0.873 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.195 0.805 27 H 0.207 0.793 28 H 0.187 0.813 29 H 0.248 0.752 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.564 22.256 4.110 29.916 hybrid contribution 0.634 -0.534 -0.726 1.102 sum -18.930 21.721 3.384 29.010 Atomic orbital electron populations 1.23529 0.74846 1.05893 1.03584 1.86105 1.24898 1.26841 1.87369 1.18819 0.89018 0.86434 0.92634 1.21691 1.02232 0.90520 1.08301 1.21475 0.92762 0.98818 0.90377 1.21378 0.95134 0.97044 1.06739 1.17694 0.76769 0.92982 1.00010 1.91518 1.30133 1.96968 1.93544 1.19111 0.93032 0.92486 1.18898 1.18354 0.78719 0.83992 0.83606 1.90745 1.57341 1.65347 1.32954 1.46079 1.53440 1.27281 1.08554 1.21123 0.93412 0.84470 0.98976 1.19636 0.97159 0.95612 0.92390 1.21207 1.33782 1.09416 0.93530 0.95263 1.26050 0.94172 0.95028 1.03766 1.70065 1.38938 1.21320 1.28523 0.85546 0.80523 0.78486 0.77396 1.18933 1.20803 1.16262 0.87254 0.90256 0.89774 0.80515 0.79345 0.81252 0.75237 0.93700 0.93534 0.94429 0.94725 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -8.51 9.95 -89.63 -0.89 -9.40 16 3 C 0.18 4.20 6.70 22.84 0.15 4.36 16 4 C -0.21 -2.71 9.03 22.34 0.20 -2.51 16 5 C -0.02 -0.16 10.02 22.29 0.22 0.06 16 6 C -0.18 -2.84 10.00 22.28 0.22 -2.62 16 7 C 0.15 3.78 7.29 22.66 0.17 3.94 16 8 F -0.14 -4.40 16.83 44.97 0.76 -3.65 16 9 C -0.23 -7.00 5.64 -19.97 -0.11 -7.11 16 10 C 0.57 22.65 6.43 86.65 0.56 23.21 16 11 O -0.58 -28.53 17.11 -4.04 -0.07 -28.60 16 12 N -0.70 -26.97 5.55 -466.42 -2.59 -29.56 16 13 C 0.14 6.56 5.61 86.38 0.48 7.04 16 14 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 15 C -0.54 -32.13 9.66 25.60 0.25 -31.88 16 16 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 17 C 0.01 0.42 5.47 84.66 0.46 0.89 16 18 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 19 Si 0.96 43.46 27.47 68.60 1.88 45.34 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 23 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 0.65 7.65 -2.39 -0.02 0.63 16 25 H 0.08 0.62 7.67 -2.39 -0.02 0.60 16 26 H 0.18 0.94 6.29 -2.91 -0.02 0.92 16 27 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.41 13.13 8.46 -92.71 -0.78 12.35 16 30 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.69 7.20 -2.38 -0.02 1.67 16 33 H 0.03 1.55 7.57 -2.39 -0.02 1.53 16 34 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -82.81 303.12 3.52 -79.29 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.29 Total: 10.19 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 3.84 Total: -3.69 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -2.29 Total: -89.48 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.96 Total: -38.00 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.76 Total: -3.65 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -82.81 3.52 -79.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.741 kcal (2) G-P(sol) polarization free energy of solvation -82.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds