Wall clock time and date at job start Mon Mar 30 2020 00:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34733 * 117.00571 * 2 1 4 4 O 1.21488 * 119.99571 * 359.97438 * 3 2 1 5 5 C 1.47557 * 120.00358 * 179.97438 * 3 2 1 6 6 C 1.39715 * 120.17479 * 0.02562 * 5 3 2 7 7 C 1.37835 * 119.87813 * 179.97438 * 6 5 3 8 8 C 1.38478 * 120.22246 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.82323 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47200 * 89.99972 * 9 8 7 11 11 C 1.46504 * 120.00006 * 270.00167 * 10 9 8 12 12 C 1.36935 * 120.00014 * 89.99551 * 10 9 8 13 13 H 1.08006 * 119.99921 * 22.37694 * 12 10 9 14 14 C 1.38811 * 120.00353 * 202.37426 * 12 10 9 15 15 N 1.31615 * 119.99539 * 11.33662 * 14 12 10 16 16 Si 1.86798 * 120.00296 * 191.34139 * 14 12 10 17 17 H 1.48498 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47183 * 119.99840 * 16 14 12 19 19 H 1.48495 * 109.47033 * 239.99893 * 16 14 12 20 20 C 1.38205 * 120.35053 * 359.76215 * 8 7 6 21 21 C 1.38319 * 120.12082 * 0.52222 * 20 8 7 22 22 F 1.35099 * 120.11201 * 179.73686 * 21 20 8 23 23 H 1.09000 * 109.47240 * 300.00742 * 1 2 3 24 24 H 1.09000 * 109.46724 * 60.00166 * 1 2 3 25 25 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.06125 * 359.97438 * 6 5 3 27 27 H 1.08001 * 119.89064 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.46664 * 209.99857 * 9 8 7 29 29 H 1.08996 * 109.46844 * 329.99848 * 9 8 7 30 30 H 1.08991 * 109.47169 * 94.20132 * 11 10 9 31 31 H 1.08996 * 109.46660 * 214.20613 * 11 10 9 32 32 H 1.08997 * 109.46620 * 334.20103 * 11 10 9 33 33 H 0.97003 * 120.00031 * 180.02562 * 15 14 12 34 34 H 1.08004 * 119.94031 * 180.27823 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5373 1.2776 0.0006 6 6 4.3017 0.1081 0.0006 7 6 5.6778 0.1874 0.0006 8 6 6.3049 1.4220 0.0000 9 6 7.8101 1.4981 -0.0005 10 7 8.2973 1.5224 -1.3820 11 6 8.6050 0.2675 -2.0724 12 6 8.4650 2.7182 -2.0279 13 1 8.5955 3.6262 -1.4578 14 6 8.4674 2.7633 -3.4153 15 7 8.0897 1.7102 -4.1085 16 14 9.0067 4.3186 -4.2983 17 1 9.3797 5.3513 -3.2986 18 1 10.1778 4.0176 -5.1603 19 1 7.8908 4.8233 -5.1380 20 6 5.5579 2.5847 -0.0055 21 6 4.1761 2.5220 0.0004 22 9 3.4460 3.6587 0.0004 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.8154 -0.8562 0.0006 27 1 6.2690 -0.7165 0.0010 28 1 8.1281 2.4055 0.5129 29 1 8.2180 0.6278 0.5134 30 1 7.7359 -0.0540 -2.6464 31 1 9.4486 0.4205 -2.7453 32 1 8.8593 -0.4977 -1.3390 33 1 8.0917 1.7416 -5.0780 34 1 6.0539 3.5441 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089122803.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:17 Heat of formation + Delta-G solvation = -96.591126 kcal Electronic energy + Delta-G solvation = -20069.942702 eV Core-core repulsion = 16689.757117 eV Total energy + Delta-G solvation = -3380.185585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.01478 -41.54755 -39.95097 -37.57665 -37.25548 -33.96872 -32.32016 -31.52124 -29.09292 -27.96912 -27.55326 -24.58734 -23.78829 -22.72729 -21.80469 -19.19290 -18.73919 -18.38710 -17.78727 -17.54251 -17.07035 -16.79566 -16.57606 -15.79882 -15.50613 -15.25896 -15.19407 -14.52242 -14.39780 -14.29673 -13.92152 -13.23040 -13.15746 -13.09903 -12.80944 -12.79163 -12.51811 -12.32449 -12.10268 -11.98330 -11.86255 -11.81631 -11.61342 -10.67127 -10.03076 -9.75188 -8.84050 -7.86275 -5.31654 -0.46833 0.24019 1.37979 1.45288 1.47678 1.55742 1.58179 2.46921 2.62998 3.10334 3.31424 3.56524 3.77944 3.84098 3.96311 4.23110 4.29650 4.31304 4.33352 4.61718 4.65653 4.75990 4.91794 4.96217 5.02446 5.06879 5.13303 5.24262 5.39476 5.60418 5.64683 5.78600 5.83682 6.30844 6.57968 7.13423 7.83613 8.24492 9.16349 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.005266 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.547903 B = 5316.084801 C = 5686.192623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.514 3.486 4 O -0.536 6.536 5 C -0.200 4.200 6 C -0.024 4.024 7 C -0.133 4.133 8 C -0.024 4.024 9 C 0.171 3.829 10 N -0.603 5.603 11 C 0.173 3.827 12 C -0.257 4.257 13 H 0.075 0.925 14 C -0.048 4.048 15 N -0.933 5.933 16 Si 0.959 3.041 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.299 1.299 20 C -0.161 4.161 21 C 0.138 3.862 22 F -0.138 7.138 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.142 0.858 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.004 0.996 31 H 0.019 0.981 32 H 0.043 0.957 33 H 0.247 0.753 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 -7.161 10.562 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.361 3.639 4 O -0.428 6.428 5 C -0.202 4.202 6 C -0.042 4.042 7 C -0.152 4.152 8 C -0.029 4.029 9 C 0.045 3.955 10 N -0.324 5.324 11 C 0.028 3.972 12 C -0.388 4.388 13 H 0.093 0.907 14 C -0.243 4.243 15 N -0.579 5.579 16 Si 0.788 3.212 17 H -0.188 1.188 18 H -0.216 1.216 19 H -0.227 1.227 20 C -0.181 4.181 21 C 0.118 3.882 22 F -0.116 7.116 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.159 0.841 26 H 0.190 0.810 27 H 0.177 0.823 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.544 -6.864 10.381 15.096 hybrid contribution -0.368 1.474 -1.147 1.903 sum -8.913 -5.390 9.235 13.920 Atomic orbital electron populations 1.23631 0.74055 1.06170 1.02552 1.86518 1.25395 1.30811 1.83925 1.21042 0.88823 0.81859 0.72211 1.90846 1.67346 1.37046 1.47546 1.19141 0.89941 0.94114 1.17054 1.21550 0.93543 0.97287 0.91806 1.21370 0.94223 0.98236 1.01348 1.21450 0.99816 0.92131 0.89456 1.20339 0.86201 1.02567 0.86345 1.44357 1.73060 1.03377 1.11576 1.20653 0.97617 0.85285 0.93601 1.19604 1.41894 0.87919 0.89333 0.90699 1.25725 1.01007 0.99755 0.97843 1.70215 1.51769 1.30444 1.05441 0.85317 0.76999 0.80204 0.78684 1.18835 1.21590 1.22692 1.21040 0.90444 1.01215 1.05398 1.17974 0.89627 0.80938 0.99673 1.91501 1.77741 1.49082 1.93290 0.91708 0.92307 0.84051 0.81016 0.82302 0.91540 0.89015 0.97788 0.96251 0.93883 0.94326 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.35 -8.97 9.82 -56.43 -0.55 -9.53 16 3 C 0.51 17.00 7.89 70.28 0.55 17.56 16 4 O -0.54 -20.82 15.13 19.88 0.30 -20.52 16 5 C -0.20 -6.71 5.88 -20.06 -0.12 -6.82 16 6 C -0.02 -0.65 9.61 22.53 0.22 -0.44 16 7 C -0.13 -3.81 9.67 22.23 0.22 -3.59 16 8 C -0.02 -0.83 5.47 -19.81 -0.11 -0.93 16 9 C 0.17 5.93 5.82 85.63 0.50 6.42 16 10 N -0.60 -27.40 2.91 -731.31 -2.13 -29.53 16 11 C 0.17 7.75 9.01 127.77 1.15 8.90 16 12 C -0.26 -13.27 9.67 84.03 0.81 -12.46 16 13 H 0.08 3.75 7.84 -2.91 -0.02 3.72 16 14 C -0.05 -2.58 5.13 84.86 0.44 -2.15 16 15 N -0.93 -53.60 10.59 21.65 0.23 -53.38 16 16 Si 0.96 44.39 29.57 68.60 2.03 46.42 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 C -0.16 -5.93 9.66 22.28 0.22 -5.71 16 21 C 0.14 5.18 7.29 22.69 0.17 5.35 16 22 F -0.14 -5.62 15.55 44.97 0.70 -4.92 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.17 3.52 7.61 -2.91 -0.02 3.50 16 27 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 29 H 0.09 2.55 7.80 -2.39 -0.02 2.53 16 30 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 31 H 0.02 0.95 7.19 -2.39 -0.02 0.93 16 32 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 33 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -67.61 303.09 6.92 -60.69 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.11 Total: 2.92 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 5.24 Total: 7.84 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.90 Total: -82.90 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.25 Total: -30.05 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.70 Total: -4.92 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -67.61 6.92 -60.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089122803.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.900 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds