Wall clock time and date at job start Mon Mar 30 2020 00:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.36941 * 120.00104 * 275.65479 * 3 2 1 5 5 H 1.08000 * 119.99828 * 34.00074 * 4 3 2 6 6 C 1.38808 * 120.00252 * 213.99963 * 4 3 2 7 7 N 1.31619 * 119.99755 * 22.94704 * 6 4 3 8 8 Si 1.86802 * 120.00022 * 202.94782 * 6 4 3 9 9 H 1.48504 * 109.46938 * 90.00163 * 8 6 4 10 10 H 1.48502 * 109.47126 * 209.99709 * 8 6 4 11 11 H 1.48498 * 109.46972 * 329.99976 * 8 6 4 12 12 C 1.46496 * 120.00138 * 95.66026 * 3 2 1 13 13 C 1.50700 * 109.47232 * 269.99977 * 12 3 2 14 14 C 1.38238 * 120.00087 * 89.99613 * 13 12 3 15 15 C 1.38232 * 119.99793 * 179.72845 * 14 13 12 16 16 C 1.38233 * 119.99929 * 0.27892 * 15 14 13 17 17 S 1.76202 * 119.99746 * 179.97438 * 16 15 14 18 18 C 1.81399 * 103.00312 * 89.99894 * 17 16 15 19 19 O 1.42102 * 103.00243 * 336.14011 * 17 16 15 20 20 C 1.38231 * 120.00268 * 359.97438 * 16 15 14 21 21 C 1.38230 * 119.99710 * 270.19254 * 13 12 3 22 22 H 1.09007 * 109.46806 * 299.99961 * 1 2 3 23 23 H 1.09000 * 109.47395 * 59.99304 * 1 2 3 24 24 H 1.08991 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46665 * 240.00431 * 2 1 3 26 26 H 1.08995 * 109.47222 * 120.00243 * 2 1 3 27 27 H 0.97003 * 119.99652 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47267 * 149.99425 * 12 3 2 29 29 H 1.09001 * 109.47032 * 29.99931 * 12 3 2 30 30 H 1.08003 * 120.00039 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.99681 * 180.25465 * 15 14 13 32 32 H 1.08992 * 109.47329 * 59.99592 * 18 17 16 33 33 H 1.09002 * 109.46761 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.46592 * 299.99731 * 18 17 16 35 35 H 1.08006 * 120.00019 * 179.97438 * 20 16 15 36 36 H 1.07999 * 120.00245 * 0.03900 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0657 -1.1802 5 1 1.4324 1.8888 -1.9798 6 6 3.1609 2.9870 -1.3487 7 7 4.2518 2.8992 -0.6175 8 14 2.9913 4.3516 -2.6131 9 1 2.3634 5.5386 -1.9791 10 1 4.3347 4.7184 -3.1288 11 1 2.1409 3.8825 -3.7365 12 6 2.3805 2.0301 1.2625 13 6 1.1716 2.7239 1.8356 14 6 0.3272 2.0450 2.6940 15 6 -0.7785 2.6832 3.2241 16 6 -1.0430 3.9985 2.8911 17 16 -2.4528 4.8118 3.5662 18 6 -1.8084 5.5430 5.0962 19 8 -3.3214 3.7335 3.8858 20 6 -0.2015 4.6758 2.0286 21 6 0.9050 4.0380 1.4995 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 4.9679 3.5428 -0.7356 28 1 3.1680 2.7618 1.0821 29 1 2.7368 1.2793 1.9678 30 1 0.5341 1.0174 2.9544 31 1 -1.4359 2.1540 3.8980 32 1 -1.0008 6.2345 4.8563 33 1 -2.6077 6.0802 5.6067 34 1 -1.4298 4.7531 5.7449 35 1 -0.4084 5.7034 1.7681 36 1 1.5626 4.5673 0.8259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399155.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:44 Heat of formation + Delta-G solvation = 4.773443 kcal Electronic energy + Delta-G solvation = -18371.971050 eV Core-core repulsion = 15562.394139 eV Total energy + Delta-G solvation = -2809.576911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -38.73332 -35.87690 -35.54935 -31.99504 -31.39749 -30.40147 -28.90060 -28.59978 -25.74825 -23.64005 -22.17107 -21.23987 -20.15494 -17.81151 -16.85140 -16.28170 -15.23962 -14.83001 -14.71063 -14.49579 -13.87733 -13.79044 -13.54546 -13.50857 -12.93365 -12.68674 -12.52187 -12.32212 -12.03714 -11.76466 -11.48193 -11.20479 -10.94816 -10.82574 -10.67819 -10.49634 -10.13872 -9.98822 -9.93302 -9.86929 -8.62048 -8.50722 -8.39602 -8.07456 -6.73130 -5.89872 -3.42525 1.35895 1.94359 2.14892 2.88344 3.29236 3.38157 3.40034 3.96767 4.27574 4.42974 5.15109 5.20202 5.25096 5.32590 5.42998 5.54447 5.78257 5.92253 5.95493 6.01530 6.06425 6.34137 6.35255 6.40230 6.43879 6.60812 6.68629 6.75227 6.86587 6.94881 7.12988 7.29723 7.50812 7.62356 7.73703 8.39359 9.06577 9.70114 10.26550 11.10001 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.006008 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.680021 B = 4659.076982 C = 5307.069759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 N -0.574 5.574 4 C -0.251 4.251 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.162 3.838 13 C -0.029 4.029 14 C -0.137 4.137 15 C -0.060 4.060 16 C -0.481 4.481 17 S 1.324 4.676 18 C -0.499 4.499 19 O -0.868 6.868 20 C -0.050 4.050 21 C -0.118 4.118 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.257 0.743 28 H 0.112 0.888 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 6.565 6.937 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 N -0.293 5.293 4 C -0.380 4.380 5 H 0.080 0.920 6 C -0.191 4.191 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.036 3.964 13 C -0.033 4.033 14 C -0.157 4.157 15 C -0.079 4.079 16 C -0.580 4.580 17 S 1.523 4.477 18 C -0.655 4.655 19 O -0.864 6.864 20 C -0.070 4.070 21 C -0.138 4.138 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.053 0.947 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.929 6.651 6.557 12.921 hybrid contribution 0.871 -0.883 0.727 1.438 sum -8.058 5.768 7.285 12.299 Atomic orbital electron populations 1.22396 0.99839 0.99102 1.01736 1.20874 0.91852 0.86753 0.98908 1.43757 1.75479 1.08110 1.01944 1.19076 1.07457 1.18655 0.92847 0.91968 1.25076 0.94106 1.01488 0.98444 1.69980 1.04569 1.35801 1.42346 0.86408 0.77096 0.82684 0.81435 1.21008 1.21685 1.20190 1.20254 0.92886 0.97241 0.86022 1.21523 0.98181 0.93418 0.90162 1.21095 0.95625 0.99537 0.99475 1.20893 0.95695 0.93766 0.97549 1.27078 1.16082 1.03170 1.11662 1.69166 0.80591 1.02917 0.95029 1.27785 1.09743 1.09267 1.18702 1.93063 1.55283 1.55199 1.82813 1.20756 0.93124 0.98712 0.94401 1.21227 0.97623 0.95273 0.99702 0.93196 0.93242 0.94542 0.93537 0.94683 0.93341 0.87078 0.94696 0.86909 0.86857 0.87288 0.88245 0.90314 0.85686 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 10.20 37.16 0.38 -2.91 16 2 C 0.14 3.00 6.44 -4.04 -0.03 2.98 16 3 N -0.57 -13.82 2.44 -174.62 -0.43 -14.25 16 4 C -0.25 -6.56 9.48 -15.06 -0.14 -6.71 16 5 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 6 C 0.01 0.23 4.95 -17.43 -0.09 0.15 16 7 N -0.88 -24.05 11.31 55.49 0.63 -23.42 16 8 Si 0.89 20.45 29.61 -169.99 -5.03 15.42 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.16 3.68 5.46 -5.20 -0.03 3.65 16 13 C -0.03 -0.59 5.44 -104.62 -0.57 -1.16 16 14 C -0.14 -2.58 7.87 -39.58 -0.31 -2.89 16 15 C -0.06 -1.06 9.44 -39.59 -0.37 -1.44 16 16 C -0.48 -7.43 5.61 -39.59 -0.22 -7.66 16 17 S 1.32 15.23 14.19 -107.50 -1.53 13.71 16 18 C -0.50 -4.89 10.70 101.05 1.08 -3.81 16 19 O -0.87 -15.50 16.90 -35.23 -0.60 -16.10 16 20 C -0.05 -0.77 9.75 -39.58 -0.39 -1.15 16 21 C -0.12 -2.25 9.70 -39.58 -0.38 -2.63 16 22 H 0.05 0.98 6.13 -51.92 -0.32 0.66 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 26 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.11 2.80 5.26 -51.93 -0.27 2.53 16 29 H 0.03 0.76 7.80 -51.93 -0.41 0.35 16 30 H 0.11 2.01 8.02 -52.48 -0.42 1.59 16 31 H 0.11 2.03 7.45 -52.49 -0.39 1.64 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -32.88 314.48 -8.43 -41.31 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.15 Total: 2.19 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.07 Total: -23.59 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.20 Total: -37.67 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.60 Total: -16.10 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 16 Polarization: 15.23 SS G_CDS: -1.53 Total: 13.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.88 -8.43 -41.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399155.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.079 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds