Wall clock time and date at job start Mon Mar 30 2020 00:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47101 * 2 1 4 4 C 1.36941 * 120.00104 * 275.65479 * 3 2 1 5 5 H 1.08000 * 119.99828 * 34.00074 * 4 3 2 6 6 C 1.38808 * 120.00252 * 213.99963 * 4 3 2 7 7 N 1.31619 * 119.99755 * 22.94704 * 6 4 3 8 8 Si 1.86802 * 120.00022 * 202.94782 * 6 4 3 9 9 H 1.48504 * 109.46938 * 90.00163 * 8 6 4 10 10 H 1.48502 * 109.47126 * 209.99709 * 8 6 4 11 11 H 1.48498 * 109.46972 * 329.99976 * 8 6 4 12 12 C 1.46496 * 120.00138 * 95.66026 * 3 2 1 13 13 C 1.50700 * 109.47232 * 269.99977 * 12 3 2 14 14 C 1.38238 * 120.00087 * 89.99613 * 13 12 3 15 15 C 1.38232 * 119.99793 * 179.72845 * 14 13 12 16 16 C 1.38233 * 119.99929 * 0.27892 * 15 14 13 17 17 S 1.76202 * 119.99746 * 179.97438 * 16 15 14 18 18 C 1.81399 * 103.00312 * 89.99894 * 17 16 15 19 19 O 1.42102 * 103.00243 * 336.14011 * 17 16 15 20 20 C 1.38231 * 120.00268 * 359.97438 * 16 15 14 21 21 C 1.38230 * 119.99710 * 270.19254 * 13 12 3 22 22 H 1.09007 * 109.46806 * 299.99961 * 1 2 3 23 23 H 1.09000 * 109.47395 * 59.99304 * 1 2 3 24 24 H 1.08991 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46665 * 240.00431 * 2 1 3 26 26 H 1.08995 * 109.47222 * 120.00243 * 2 1 3 27 27 H 0.97003 * 119.99652 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47267 * 149.99425 * 12 3 2 29 29 H 1.09001 * 109.47032 * 29.99931 * 12 3 2 30 30 H 1.08003 * 120.00039 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.99681 * 180.25465 * 15 14 13 32 32 H 1.08992 * 109.47329 * 59.99592 * 18 17 16 33 33 H 1.09002 * 109.46761 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.46592 * 299.99731 * 18 17 16 35 35 H 1.08006 * 120.00019 * 179.97438 * 20 16 15 36 36 H 1.07999 * 120.00245 * 0.03900 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0657 -1.1802 5 1 1.4324 1.8888 -1.9798 6 6 3.1609 2.9870 -1.3487 7 7 4.2518 2.8992 -0.6175 8 14 2.9913 4.3516 -2.6131 9 1 2.3634 5.5386 -1.9791 10 1 4.3347 4.7184 -3.1288 11 1 2.1409 3.8825 -3.7365 12 6 2.3805 2.0301 1.2625 13 6 1.1716 2.7239 1.8356 14 6 0.3272 2.0450 2.6940 15 6 -0.7785 2.6832 3.2241 16 6 -1.0430 3.9985 2.8911 17 16 -2.4528 4.8118 3.5662 18 6 -1.8084 5.5430 5.0962 19 8 -3.3214 3.7335 3.8858 20 6 -0.2015 4.6758 2.0286 21 6 0.9050 4.0380 1.4995 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 4.9679 3.5428 -0.7356 28 1 3.1680 2.7618 1.0821 29 1 2.7368 1.2793 1.9678 30 1 0.5341 1.0174 2.9544 31 1 -1.4359 2.1540 3.8980 32 1 -1.0008 6.2345 4.8563 33 1 -2.6077 6.0802 5.6067 34 1 -1.4298 4.7531 5.7449 35 1 -0.4084 5.7034 1.7681 36 1 1.5626 4.5673 0.8259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399155.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:44 Heat of formation + Delta-G solvation = -15.846002 kcal Electronic energy + Delta-G solvation = -18372.865177 eV Core-core repulsion = 15562.394139 eV Total energy + Delta-G solvation = -2810.471037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17838 -37.60335 -36.80312 -33.89027 -32.90544 -31.79736 -30.44490 -29.58178 -27.51477 -25.37691 -23.56137 -22.77842 -21.87170 -18.98009 -18.68664 -17.51396 -16.98811 -16.24998 -16.07169 -15.75447 -15.61962 -15.43644 -14.96770 -14.55016 -14.35154 -14.11182 -13.92601 -13.65368 -13.37674 -13.19681 -13.04250 -12.87169 -12.63143 -12.38258 -12.32495 -12.17586 -11.90645 -11.70176 -11.60616 -11.19654 -10.54239 -9.86432 -9.78243 -9.24731 -8.64733 -7.84762 -5.43194 0.09807 0.54179 1.06093 1.48168 1.50858 1.59196 1.86441 2.51444 2.76978 3.07022 3.23223 3.80000 3.94785 4.14181 4.24854 4.35122 4.36197 4.50271 4.57871 4.60356 4.72381 4.76233 4.85616 4.99493 5.02034 5.18554 5.19729 5.20470 5.36960 5.46001 5.50332 5.58921 5.70649 5.93560 6.14128 6.44643 7.12660 7.81014 8.34223 9.12258 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.006008 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.680021 B = 4659.076982 C = 5307.069759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.262 4.262 5 H 0.051 0.949 6 C -0.030 4.030 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.271 1.271 10 H -0.294 1.294 11 H -0.276 1.276 12 C 0.168 3.832 13 C -0.049 4.049 14 C -0.142 4.142 15 C -0.075 4.075 16 C -0.481 4.481 17 S 1.400 4.600 18 C -0.495 4.495 19 O -0.928 6.928 20 C -0.035 4.035 21 C -0.138 4.138 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.254 0.746 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.180 0.820 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 8.725 7.645 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 N -0.310 5.310 4 C -0.392 4.392 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.221 1.221 11 H -0.201 1.201 12 C 0.043 3.957 13 C -0.052 4.052 14 C -0.162 4.162 15 C -0.095 4.095 16 C -0.577 4.577 17 S 1.599 4.401 18 C -0.653 4.653 19 O -0.924 6.924 20 C -0.054 4.054 21 C -0.158 4.158 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.197 0.803 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.721 8.780 7.255 15.642 hybrid contribution 1.365 -1.504 0.663 2.136 sum -9.357 7.277 7.918 14.254 Atomic orbital electron populations 1.22217 0.98108 1.00604 1.00637 1.20971 0.93156 0.85692 0.98939 1.43930 1.75974 1.09197 1.01902 1.19148 1.07184 1.19335 0.93527 0.93114 1.25677 0.93679 1.03105 1.00268 1.70097 1.05193 1.36491 1.44040 0.85532 0.76662 0.80526 0.79400 1.19655 1.22112 1.20081 1.20035 0.93497 0.96568 0.85643 1.21223 0.97658 0.94437 0.91926 1.21055 0.95953 0.99667 0.99541 1.21012 0.95440 0.95130 0.97889 1.27751 1.16775 1.02463 1.10725 1.68482 0.77071 0.99542 0.95055 1.27743 1.11534 1.09239 1.16812 1.92951 1.57568 1.57226 1.84630 1.21239 0.90927 1.00823 0.92412 1.21293 0.99155 0.95006 1.00311 0.93756 0.94708 0.91681 0.94447 0.93627 0.93619 0.89721 0.95013 0.86896 0.87276 0.84400 0.85704 0.92130 0.80261 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 10.20 71.98 0.73 -5.24 16 2 C 0.14 5.92 6.44 86.38 0.56 6.48 16 3 N -0.59 -29.20 2.44 -706.36 -1.73 -30.93 16 4 C -0.26 -14.04 9.48 84.03 0.80 -13.24 16 5 H 0.05 2.78 7.93 -2.91 -0.02 2.76 16 6 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 7 N -0.91 -51.10 11.31 21.65 0.24 -50.86 16 8 Si 0.95 42.30 29.61 68.60 2.03 44.33 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 C 0.17 7.93 5.46 85.63 0.47 8.39 16 13 C -0.05 -2.03 5.44 -19.87 -0.11 -2.14 16 14 C -0.14 -5.37 7.87 22.27 0.18 -5.19 16 15 C -0.08 -2.63 9.44 22.27 0.21 -2.41 16 16 C -0.48 -13.60 5.61 22.27 0.12 -13.48 16 17 S 1.40 27.23 14.19 -56.49 -0.80 26.43 16 18 C -0.50 -7.47 10.70 113.37 1.21 -6.26 16 19 O -0.93 -31.16 16.90 -148.98 -2.52 -33.68 16 20 C -0.04 -0.97 9.75 22.27 0.22 -0.75 16 21 C -0.14 -5.14 9.70 22.27 0.22 -4.93 16 22 H 0.04 1.73 6.13 -2.38 -0.01 1.71 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 26 H 0.05 1.82 7.83 -2.39 -0.02 1.81 16 27 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.09 4.47 5.26 -2.39 -0.01 4.46 16 29 H 0.03 1.44 7.80 -2.39 -0.02 1.42 16 30 H 0.11 4.11 8.02 -2.91 -0.02 4.08 16 31 H 0.11 3.86 7.45 -2.91 -0.02 3.84 16 32 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -73.28 314.48 3.31 -69.97 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.05 Total: 14.66 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 5.02 Total: -39.92 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.48 Total: -81.78 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -2.52 Total: -33.68 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 27.23 SS G_CDS: -0.80 Total: 26.43 kcal Total: -73.28 3.31 -69.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399155.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.127 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds