Wall clock time and date at job start Mon Mar 30 2020 00:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46511 * 109.47179 * 2 1 4 4 C 1.36927 * 119.99976 * 93.44831 * 3 2 1 5 5 H 1.08003 * 120.00183 * 214.30777 * 4 3 2 6 6 C 1.38815 * 120.00278 * 34.31767 * 4 3 2 7 7 N 1.31618 * 119.99696 * 22.03425 * 6 4 3 8 8 Si 1.86799 * 120.00276 * 202.03752 * 6 4 3 9 9 H 1.48501 * 109.46723 * 89.99709 * 8 6 4 10 10 H 1.48493 * 109.47202 * 209.99500 * 8 6 4 11 11 H 1.48493 * 109.46870 * 329.99871 * 8 6 4 12 12 C 1.46502 * 119.99393 * 273.72870 * 3 2 1 13 13 C 1.50694 * 109.47070 * 269.72177 * 12 3 2 14 14 C 1.38233 * 120.00035 * 269.72709 * 13 12 3 15 15 C 1.38240 * 120.00271 * 179.74247 * 14 13 12 16 16 C 1.38240 * 119.99487 * 0.55909 * 15 14 13 17 17 S 1.76192 * 120.00045 * 179.72269 * 16 15 14 18 18 C 1.81395 * 103.00001 * 269.97681 * 17 16 15 19 19 O 1.42102 * 102.99937 * 23.82551 * 17 16 15 20 20 C 1.38238 * 120.00014 * 359.69285 * 16 15 14 21 21 C 1.38233 * 120.00118 * 0.03046 * 20 16 15 22 22 H 1.09008 * 109.47353 * 299.99915 * 1 2 3 23 23 H 1.08998 * 109.47482 * 60.00045 * 1 2 3 24 24 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47537 * 239.99994 * 2 1 3 26 26 H 1.09004 * 109.47382 * 119.99524 * 2 1 3 27 27 H 0.97005 * 120.00322 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47323 * 29.72501 * 12 3 2 29 29 H 1.09006 * 109.46854 * 149.72207 * 12 3 2 30 30 H 1.08000 * 120.00125 * 0.02562 * 14 13 12 31 31 H 1.07992 * 120.00448 * 180.27706 * 15 14 13 32 32 H 1.08997 * 109.47624 * 59.99697 * 18 17 16 33 33 H 1.09001 * 109.47471 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47422 * 299.99883 * 18 17 16 35 35 H 1.07997 * 119.99801 * 180.02562 * 20 16 15 36 36 H 1.07996 * 120.00513 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3138 2.0030 1.1837 5 1 2.1353 3.0622 1.2966 6 6 2.8429 1.2720 2.2385 7 7 3.4582 0.1320 2.0058 8 14 2.6817 1.9062 3.9881 9 1 1.4244 1.3911 4.5874 10 1 3.8402 1.4409 4.7921 11 1 2.6521 3.3908 3.9757 12 6 2.1846 2.0993 -1.2661 13 6 3.5805 1.8784 -1.7892 14 6 4.5964 2.7468 -1.4361 15 6 5.8781 2.5412 -1.9116 16 6 6.1413 1.4738 -2.7496 17 16 7.7733 1.2158 -3.3616 18 6 7.7847 2.1664 -4.9065 19 8 8.5841 1.8714 -2.3961 20 6 5.1243 0.6083 -3.1069 21 6 3.8439 0.8107 -2.6268 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8276 -0.3791 2.7429 28 1 1.4615 1.7278 -1.9922 29 1 2.0218 3.1648 -1.1037 30 1 4.3898 3.5834 -0.7850 31 1 6.6727 3.2171 -1.6321 32 1 7.5794 3.2146 -4.6897 33 1 8.7623 2.0777 -5.3805 34 1 7.0192 1.7776 -5.5780 35 1 5.3301 -0.2258 -3.7612 36 1 3.0493 0.1349 -2.9062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:49 Heat of formation + Delta-G solvation = 4.948794 kcal Electronic energy + Delta-G solvation = -18171.681138 eV Core-core repulsion = 15362.111830 eV Total energy + Delta-G solvation = -2809.569307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -38.65310 -35.86477 -35.47496 -32.07608 -31.03759 -30.35161 -28.98931 -28.62230 -25.69208 -23.55405 -22.16857 -21.36610 -19.92968 -17.75063 -16.72318 -16.25386 -15.09834 -14.86818 -14.63719 -14.54373 -14.07962 -13.75443 -13.50030 -13.44491 -12.88571 -12.63616 -12.42494 -12.20201 -11.94540 -11.67330 -11.36425 -11.29195 -10.90582 -10.86587 -10.66104 -10.42106 -10.10375 -9.98255 -9.87344 -9.65886 -8.56119 -8.51235 -8.32767 -8.04559 -6.70833 -5.86086 -3.38029 1.41951 2.01764 2.20798 2.95555 3.33476 3.41136 3.42065 4.04124 4.31883 4.47697 5.19315 5.26122 5.28422 5.33481 5.47953 5.55021 5.72790 5.94933 5.99181 6.02548 6.21333 6.26346 6.40096 6.51441 6.56217 6.62972 6.69028 6.79069 6.82581 6.94789 7.21633 7.35452 7.59232 7.69266 7.75014 8.42186 9.10173 9.72134 10.28218 11.13830 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.005546 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.196542 B = 5047.589744 C = 5728.957589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 N -0.570 5.570 4 C -0.258 4.258 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.879 5.879 8 Si 0.900 3.100 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.168 3.832 13 C -0.034 4.034 14 C -0.116 4.116 15 C -0.054 4.054 16 C -0.480 4.480 17 S 1.325 4.675 18 C -0.500 4.500 19 O -0.865 6.865 20 C -0.049 4.049 21 C -0.135 4.135 22 H 0.049 0.951 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.022 0.978 26 H 0.099 0.901 27 H 0.256 0.744 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -1.970 -13.895 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.289 5.289 4 C -0.388 4.388 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.042 3.958 13 C -0.038 4.038 14 C -0.136 4.136 15 C -0.073 4.073 16 C -0.579 4.579 17 S 1.524 4.476 18 C -0.656 4.656 19 O -0.861 6.861 20 C -0.069 4.069 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.465 -2.598 -13.351 14.036 hybrid contribution -0.570 2.408 1.411 2.849 sum 2.895 -0.189 -11.940 12.287 Atomic orbital electron populations 1.22293 1.00631 0.98806 1.00478 1.20998 0.89877 0.86030 1.01955 1.44104 1.72638 1.12116 1.00025 1.19123 1.36542 0.94377 0.88750 0.91827 1.25173 0.96551 0.97877 0.99359 1.69991 1.35368 1.15820 1.30830 0.86336 0.77346 0.78722 0.84701 1.21173 1.21660 1.20229 1.20186 0.89267 0.97258 0.89092 1.21304 0.99588 0.92608 0.90318 1.21031 0.92558 1.00400 0.99633 1.20937 0.96531 0.95549 0.94296 1.27066 1.15351 1.04033 1.11436 1.69134 0.79926 1.12552 0.86020 1.27806 1.07182 1.11777 1.18865 1.93086 1.61626 1.76516 1.54837 1.20616 0.92070 0.96597 0.97576 1.21020 0.96621 0.98361 0.99504 0.93189 0.94825 0.94571 0.95977 0.88356 0.93379 0.93364 0.92846 0.86454 0.86788 0.90357 0.88311 0.87420 0.85795 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 37.15 0.38 -2.80 16 2 C 0.14 3.14 5.98 -4.04 -0.02 3.12 16 3 N -0.57 -13.74 2.43 -174.61 -0.42 -14.17 16 4 C -0.26 -6.89 9.49 -15.06 -0.14 -7.04 16 5 H 0.06 1.70 7.92 -52.48 -0.42 1.28 16 6 C 0.01 0.32 4.94 -17.43 -0.09 0.23 16 7 N -0.88 -25.15 11.32 55.49 0.63 -24.52 16 8 Si 0.90 21.60 29.61 -169.99 -5.03 16.57 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.17 3.45 5.81 -5.20 -0.03 3.42 16 13 C -0.03 -0.68 5.46 -104.63 -0.57 -1.25 16 14 C -0.12 -2.40 9.70 -39.58 -0.38 -2.78 16 15 C -0.05 -1.05 9.44 -39.58 -0.37 -1.43 16 16 C -0.48 -7.84 5.61 -39.58 -0.22 -8.06 16 17 S 1.33 16.29 14.19 -107.50 -1.53 14.77 16 18 C -0.50 -5.02 10.70 101.05 1.08 -3.93 16 19 O -0.86 -16.63 16.90 -35.23 -0.60 -17.23 16 20 C -0.05 -0.73 9.75 -39.58 -0.39 -1.12 16 21 C -0.13 -2.37 9.70 -39.58 -0.38 -2.76 16 22 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.10 2.58 5.33 -51.93 -0.28 2.31 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 29 H 0.05 1.07 7.98 -51.93 -0.41 0.66 16 30 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 31 H 0.11 2.28 7.45 -52.49 -0.39 1.88 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 318.74 15.07 4.80 4.80 Total: -1.00 -34.86 318.74 -8.57 -43.42 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.28 Total: 0.76 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -1.14 Total: -24.41 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.20 Total: -38.69 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.60 Total: -17.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 16.29 SS G_CDS: -1.53 Total: 14.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.86 -8.57 -43.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.369 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds