Wall clock time and date at job start Mon Mar 30 2020 00:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46511 * 109.47179 * 2 1 4 4 C 1.36927 * 119.99976 * 93.44831 * 3 2 1 5 5 H 1.08003 * 120.00183 * 214.30777 * 4 3 2 6 6 C 1.38815 * 120.00278 * 34.31767 * 4 3 2 7 7 N 1.31618 * 119.99696 * 22.03425 * 6 4 3 8 8 Si 1.86799 * 120.00276 * 202.03752 * 6 4 3 9 9 H 1.48501 * 109.46723 * 89.99709 * 8 6 4 10 10 H 1.48493 * 109.47202 * 209.99500 * 8 6 4 11 11 H 1.48493 * 109.46870 * 329.99871 * 8 6 4 12 12 C 1.46502 * 119.99393 * 273.72870 * 3 2 1 13 13 C 1.50694 * 109.47070 * 269.72177 * 12 3 2 14 14 C 1.38233 * 120.00035 * 269.72709 * 13 12 3 15 15 C 1.38240 * 120.00271 * 179.74247 * 14 13 12 16 16 C 1.38240 * 119.99487 * 0.55909 * 15 14 13 17 17 S 1.76192 * 120.00045 * 179.72269 * 16 15 14 18 18 C 1.81395 * 103.00001 * 269.97681 * 17 16 15 19 19 O 1.42102 * 102.99937 * 23.82551 * 17 16 15 20 20 C 1.38238 * 120.00014 * 359.69285 * 16 15 14 21 21 C 1.38233 * 120.00118 * 0.03046 * 20 16 15 22 22 H 1.09008 * 109.47353 * 299.99915 * 1 2 3 23 23 H 1.08998 * 109.47482 * 60.00045 * 1 2 3 24 24 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47537 * 239.99994 * 2 1 3 26 26 H 1.09004 * 109.47382 * 119.99524 * 2 1 3 27 27 H 0.97005 * 120.00322 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47323 * 29.72501 * 12 3 2 29 29 H 1.09006 * 109.46854 * 149.72207 * 12 3 2 30 30 H 1.08000 * 120.00125 * 0.02562 * 14 13 12 31 31 H 1.07992 * 120.00448 * 180.27706 * 15 14 13 32 32 H 1.08997 * 109.47624 * 59.99697 * 18 17 16 33 33 H 1.09001 * 109.47471 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47422 * 299.99883 * 18 17 16 35 35 H 1.07997 * 119.99801 * 180.02562 * 20 16 15 36 36 H 1.07996 * 120.00513 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3138 2.0030 1.1837 5 1 2.1353 3.0622 1.2966 6 6 2.8429 1.2720 2.2385 7 7 3.4582 0.1320 2.0058 8 14 2.6817 1.9062 3.9881 9 1 1.4244 1.3911 4.5874 10 1 3.8402 1.4409 4.7921 11 1 2.6521 3.3908 3.9757 12 6 2.1846 2.0993 -1.2661 13 6 3.5805 1.8784 -1.7892 14 6 4.5964 2.7468 -1.4361 15 6 5.8781 2.5412 -1.9116 16 6 6.1413 1.4738 -2.7496 17 16 7.7733 1.2158 -3.3616 18 6 7.7847 2.1664 -4.9065 19 8 8.5841 1.8714 -2.3961 20 6 5.1243 0.6083 -3.1069 21 6 3.8439 0.8107 -2.6268 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8276 -0.3791 2.7429 28 1 1.4615 1.7278 -1.9922 29 1 2.0218 3.1648 -1.1037 30 1 4.3898 3.5834 -0.7850 31 1 6.6727 3.2171 -1.6321 32 1 7.5794 3.2146 -4.6897 33 1 8.7623 2.0777 -5.3805 34 1 7.0192 1.7776 -5.5780 35 1 5.3301 -0.2258 -3.7612 36 1 3.0493 0.1349 -2.9062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:48 Heat of formation + Delta-G solvation = -17.902891 kcal Electronic energy + Delta-G solvation = -18172.672061 eV Core-core repulsion = 15362.111830 eV Total energy + Delta-G solvation = -2810.560231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09924 -37.62088 -36.82351 -33.88466 -32.70610 -31.76586 -30.58156 -29.57709 -27.44252 -25.31701 -23.60180 -22.93097 -21.61588 -18.99365 -18.60748 -17.53299 -16.90350 -16.31137 -16.08552 -15.89870 -15.71196 -15.42914 -14.93989 -14.54204 -14.26107 -14.09151 -13.88056 -13.60028 -13.37000 -13.18950 -12.93570 -12.81688 -12.73832 -12.45503 -12.38301 -12.01352 -11.93331 -11.70229 -11.46230 -11.21185 -10.54924 -9.89804 -9.75193 -9.25700 -8.64541 -7.87740 -5.43500 0.12418 0.58604 1.07018 1.40574 1.42477 1.49910 1.87772 2.45781 2.79863 3.08806 3.21151 3.81339 3.93791 4.17685 4.21466 4.36350 4.47482 4.54836 4.58414 4.62993 4.81768 4.83881 4.97097 5.00449 5.11358 5.17524 5.19172 5.23051 5.39472 5.48956 5.52595 5.62980 5.86542 5.89436 6.19087 6.41723 7.12842 7.82176 8.31498 9.08402 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.005546 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.196542 B = 5047.589744 C = 5728.957589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.586 5.586 4 C -0.261 4.261 5 H 0.053 0.947 6 C -0.036 4.036 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.274 1.274 12 C 0.170 3.830 13 C -0.057 4.057 14 C -0.142 4.142 15 C -0.083 4.083 16 C -0.483 4.483 17 S 1.398 4.602 18 C -0.492 4.492 19 O -0.936 6.936 20 C -0.035 4.035 21 C -0.141 4.141 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.250 0.750 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.189 0.811 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -3.495 -16.887 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 N -0.306 5.306 4 C -0.392 4.392 5 H 0.071 0.929 6 C -0.233 4.233 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.199 1.199 12 C 0.044 3.956 13 C -0.060 4.060 14 C -0.162 4.162 15 C -0.102 4.102 16 C -0.580 4.580 17 S 1.597 4.403 18 C -0.651 4.651 19 O -0.932 6.932 20 C -0.054 4.054 21 C -0.161 4.161 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.206 0.794 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.341 -4.109 -16.337 17.174 hybrid contribution -0.451 2.926 2.063 3.608 sum 2.890 -1.183 -14.274 14.612 Atomic orbital electron populations 1.22124 0.98033 1.00368 1.00357 1.20943 0.91886 0.85337 1.00804 1.44185 1.73433 1.12489 1.00469 1.19233 1.35548 0.94020 0.90407 0.92902 1.25734 0.97031 0.98393 1.02180 1.70113 1.37108 1.17034 1.31062 0.85511 0.76982 0.78250 0.81215 1.20579 1.22389 1.19905 1.20204 0.90531 0.96565 0.88267 1.21289 0.98609 0.93903 0.92228 1.21015 0.93808 1.00837 1.00570 1.20962 0.95622 0.97259 0.96376 1.27725 1.17997 1.02392 1.09845 1.68230 0.75856 1.11454 0.84754 1.27723 1.10126 1.09984 1.17238 1.92965 1.63506 1.78405 1.58325 1.21323 0.90305 0.97112 0.96648 1.21429 0.98699 0.97399 0.98536 0.95128 0.93009 0.92157 0.94801 0.91792 0.94037 0.90639 0.93662 0.88630 0.88640 0.92381 0.85736 0.83787 0.79404 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 10.24 71.98 0.74 -4.87 16 2 C 0.14 6.15 5.98 86.37 0.52 6.66 16 3 N -0.59 -28.45 2.43 -706.33 -1.72 -30.17 16 4 C -0.26 -14.36 9.49 84.04 0.80 -13.57 16 5 H 0.05 2.94 7.92 -2.91 -0.02 2.92 16 6 C -0.04 -2.00 4.94 84.86 0.42 -1.58 16 7 N -0.91 -53.56 11.32 21.65 0.25 -53.32 16 8 Si 0.95 45.72 29.61 68.60 2.03 47.76 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 10 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.17 6.94 5.81 85.63 0.50 7.44 16 13 C -0.06 -2.28 5.46 -19.87 -0.11 -2.39 16 14 C -0.14 -6.14 9.70 22.27 0.22 -5.92 16 15 C -0.08 -3.34 9.44 22.27 0.21 -3.13 16 16 C -0.48 -14.84 5.61 22.27 0.12 -14.72 16 17 S 1.40 30.59 14.19 -56.49 -0.80 29.79 16 18 C -0.49 -7.79 10.70 113.37 1.21 -6.57 16 19 O -0.94 -35.64 16.90 -148.98 -2.52 -38.16 16 20 C -0.04 -0.91 9.75 22.27 0.22 -0.69 16 21 C -0.14 -4.55 9.70 22.27 0.22 -4.34 16 22 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.03 1.41 8.10 -2.39 -0.02 1.39 16 26 H 0.06 3.41 5.33 -2.38 -0.01 3.40 16 27 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.08 2.61 8.01 -2.39 -0.02 2.60 16 29 H 0.04 1.87 7.98 -2.38 -0.02 1.85 16 30 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.10 4.07 7.45 -2.91 -0.02 4.05 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -80.18 318.74 3.34 -76.84 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.05 Total: 10.94 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 5.06 Total: -43.67 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.47 Total: -83.49 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -2.52 Total: -38.16 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 30.59 SS G_CDS: -0.80 Total: 29.79 kcal Total: -80.18 3.34 -76.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.938 kcal (2) G-P(sol) polarization free energy of solvation -80.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds