Wall clock time and date at job start Mon Mar 30 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.46500 * 119.99939 * 274.93258 * 3 2 1 5 5 C 1.50694 * 109.47127 * 270.00206 * 4 3 2 6 6 H 1.08001 * 120.00090 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00111 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99906 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47161 * 90.00150 * 9 7 5 11 11 H 1.48497 * 109.47074 * 209.99871 * 9 7 5 12 12 H 1.48504 * 109.47302 * 330.00121 * 9 7 5 13 13 C 1.34773 * 119.99873 * 94.93254 * 3 2 1 14 14 O 1.21650 * 119.99904 * 185.53124 * 13 3 2 15 15 C 1.47190 * 120.00314 * 5.52762 * 13 3 2 16 16 C 1.44424 * 123.45754 * 54.71020 * 15 13 3 17 17 C 1.32775 * 113.08180 * 179.73420 * 16 15 13 18 18 C 1.50698 * 124.71151 * 180.26568 * 17 16 15 19 19 S 1.75506 * 110.57537 * 0.26156 * 17 16 15 20 20 C 1.36013 * 123.46122 * 234.95447 * 15 13 3 21 21 C 1.50692 * 124.59321 * 359.97352 * 20 15 13 22 22 H 1.09003 * 109.46687 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47335 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.46903 * 60.00103 * 1 2 3 25 25 H 1.09000 * 109.47335 * 239.99983 * 2 1 3 26 26 H 1.09001 * 109.46903 * 119.99897 * 2 1 3 27 27 H 1.09002 * 109.46909 * 29.99964 * 4 3 2 28 28 H 1.08998 * 109.46998 * 149.99887 * 4 3 2 29 29 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 30 30 H 1.07998 * 123.46096 * 359.97438 * 16 15 13 31 31 H 1.09000 * 109.46882 * 89.99756 * 18 17 16 32 32 H 1.09001 * 109.47154 * 209.99637 * 18 17 16 33 33 H 1.08998 * 109.47070 * 329.99646 * 18 17 16 34 34 H 1.09000 * 109.47603 * 180.34386 * 21 20 15 35 35 H 1.09007 * 109.47242 * 300.34262 * 21 20 15 36 36 H 1.09005 * 109.47524 * 60.34242 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1596 2.1082 -1.2640 5 6 3.5426 1.8856 -1.8196 6 1 4.2461 1.2651 -1.2845 7 6 3.9102 2.4750 -3.0107 8 7 3.0537 3.2311 -3.6621 9 14 5.6248 2.1997 -3.6990 10 1 5.6186 1.0038 -4.5793 11 1 6.0401 3.3899 -4.4839 12 1 6.5787 1.9865 -2.5810 13 6 2.3375 1.9831 1.1629 14 8 2.6464 3.1597 1.1740 15 6 2.3124 1.2169 2.4194 16 6 3.0446 -0.0122 2.6173 17 6 2.8787 -0.5274 3.8297 18 6 3.5247 -1.7985 4.3176 19 16 1.8028 0.4775 4.7851 20 6 1.5935 1.5910 3.5116 21 6 0.7337 2.8263 3.5880 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.4190 1.7451 -1.9767 28 1 2.0049 3.1730 -1.0900 29 1 3.3122 3.6454 -4.5001 30 1 3.6665 -0.4636 1.8584 31 1 4.4862 -1.5650 4.7749 32 1 2.8781 -2.2750 5.0545 33 1 3.6770 -2.4747 3.4765 34 1 0.2757 2.8899 4.5750 35 1 1.3497 3.7090 3.4158 36 1 -0.0462 2.7737 2.8283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:13 Heat of formation + Delta-G solvation = -17.125709 kcal Electronic energy + Delta-G solvation = -18422.683014 eV Core-core repulsion = 15612.156484 eV Total energy + Delta-G solvation = -2810.526530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.46678 -36.85958 -35.25444 -33.00466 -32.70230 -30.02637 -29.42517 -27.35481 -25.08777 -23.83381 -22.87024 -21.94007 -19.61983 -17.93036 -16.98356 -16.33578 -15.93980 -15.56516 -14.55770 -14.32325 -14.00960 -13.78389 -13.31647 -13.24628 -13.16069 -12.96649 -12.69660 -12.33339 -12.02320 -11.78968 -11.64834 -11.48012 -11.34468 -11.17721 -10.90313 -10.84430 -10.63170 -10.46688 -10.11611 -9.61990 -8.97687 -8.46359 -8.42907 -8.15474 -7.60540 -6.03219 -4.08032 1.06047 1.61523 2.02079 2.41732 3.30526 3.37224 3.41616 3.64001 4.06721 4.46073 4.77701 4.99393 5.16966 5.26123 5.31117 5.42313 5.43262 5.49234 5.69497 5.70741 5.73491 5.78234 5.87124 6.09523 6.13295 6.18486 6.27616 6.30449 6.50978 6.57028 7.11584 7.47452 7.57843 7.93755 8.24835 8.45203 8.90720 9.11029 9.57054 11.04792 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.005572 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.329100 B = 5024.096193 C = 5303.603191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.570 3.430 14 O -0.537 6.537 15 C -0.139 4.139 16 C -0.103 4.103 17 C -0.204 4.204 18 C -0.078 4.078 19 S 0.147 5.853 20 C -0.170 4.170 21 C -0.083 4.083 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -10.093 15.425 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.355 3.645 14 O -0.415 6.415 15 C -0.156 4.156 16 C -0.132 4.132 17 C -0.321 4.321 18 C -0.137 4.137 19 S 0.413 5.587 20 C -0.289 4.289 21 C -0.142 4.142 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.166 0.834 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.062 -9.444 16.686 19.831 hybrid contribution 1.516 -0.047 -2.084 2.577 sum -3.546 -9.491 14.603 17.774 Atomic orbital electron populations 1.22156 0.96804 1.01230 1.02138 1.21569 0.93722 0.84258 1.02792 1.48164 1.62473 1.13472 1.07737 1.19294 0.96801 0.93174 0.78098 1.21440 0.98536 1.30577 1.06002 0.92476 1.24930 0.97502 0.94893 0.96732 1.69934 1.35005 1.32063 1.16320 0.86503 0.84389 0.77644 0.78936 1.20625 1.21068 1.19903 1.17537 0.78019 0.86385 0.82583 1.90762 1.48605 1.15719 1.86427 1.20377 1.01883 0.97116 0.96202 1.21118 1.00862 0.94388 0.96853 1.24170 1.06562 1.03285 0.98056 1.20298 0.99787 0.92009 1.01587 1.82698 1.44801 1.15602 1.15635 1.24175 1.04543 1.02892 0.97292 1.20364 0.98229 0.93588 1.01998 0.92326 0.93210 0.92138 0.90328 0.90787 0.94905 0.93725 0.92722 0.83444 0.90943 0.91505 0.90532 0.91688 0.89384 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.10 1.74 6.05 -4.04 -0.02 1.72 16 3 N -0.59 -12.99 2.46 -176.41 -0.43 -13.42 16 4 C 0.25 6.54 5.23 -5.20 -0.03 6.52 16 5 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.57 12.75 6.93 -12.63 -0.09 12.66 16 14 O -0.54 -14.19 16.14 5.23 0.08 -14.10 16 15 C -0.14 -2.48 4.90 -104.63 -0.51 -2.99 16 16 C -0.10 -1.55 7.99 -39.02 -0.31 -1.86 16 17 C -0.20 -2.53 6.44 -36.18 -0.23 -2.77 16 18 C -0.08 -0.69 10.35 36.00 0.37 -0.32 16 19 S 0.15 1.76 22.93 -107.50 -2.46 -0.70 16 20 C -0.17 -2.61 6.34 -35.11 -0.22 -2.83 16 21 C -0.08 -1.17 9.62 36.00 0.35 -0.82 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 26 H 0.07 1.14 4.53 -51.93 -0.24 0.90 16 27 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.04 1.34 7.35 -51.93 -0.38 0.96 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.15 2.16 7.75 -52.49 -0.41 1.76 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.09 1.38 7.89 -51.93 -0.41 0.97 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -33.03 319.52 -8.22 -41.25 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.20 Total: -2.25 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.74 Total: -6.56 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.30 Total: -39.46 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.08 Total: -14.10 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.46 Total: -0.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.03 -8.22 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.127 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds