Wall clock time and date at job start Mon Mar 30 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.46500 * 119.99939 * 274.93258 * 3 2 1 5 5 C 1.50694 * 109.47127 * 270.00206 * 4 3 2 6 6 H 1.08001 * 120.00090 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00111 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99906 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47161 * 90.00150 * 9 7 5 11 11 H 1.48497 * 109.47074 * 209.99871 * 9 7 5 12 12 H 1.48504 * 109.47302 * 330.00121 * 9 7 5 13 13 C 1.34773 * 119.99873 * 94.93254 * 3 2 1 14 14 O 1.21650 * 119.99904 * 185.53124 * 13 3 2 15 15 C 1.47190 * 120.00314 * 5.52762 * 13 3 2 16 16 C 1.44424 * 123.45754 * 54.71020 * 15 13 3 17 17 C 1.32775 * 113.08180 * 179.73420 * 16 15 13 18 18 C 1.50698 * 124.71151 * 180.26568 * 17 16 15 19 19 S 1.75506 * 110.57537 * 0.26156 * 17 16 15 20 20 C 1.36013 * 123.46122 * 234.95447 * 15 13 3 21 21 C 1.50692 * 124.59321 * 359.97352 * 20 15 13 22 22 H 1.09003 * 109.46687 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47335 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.46903 * 60.00103 * 1 2 3 25 25 H 1.09000 * 109.47335 * 239.99983 * 2 1 3 26 26 H 1.09001 * 109.46903 * 119.99897 * 2 1 3 27 27 H 1.09002 * 109.46909 * 29.99964 * 4 3 2 28 28 H 1.08998 * 109.46998 * 149.99887 * 4 3 2 29 29 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 30 30 H 1.07998 * 123.46096 * 359.97438 * 16 15 13 31 31 H 1.09000 * 109.46882 * 89.99756 * 18 17 16 32 32 H 1.09001 * 109.47154 * 209.99637 * 18 17 16 33 33 H 1.08998 * 109.47070 * 329.99646 * 18 17 16 34 34 H 1.09000 * 109.47603 * 180.34386 * 21 20 15 35 35 H 1.09007 * 109.47242 * 300.34262 * 21 20 15 36 36 H 1.09005 * 109.47524 * 60.34242 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1596 2.1082 -1.2640 5 6 3.5426 1.8856 -1.8196 6 1 4.2461 1.2651 -1.2845 7 6 3.9102 2.4750 -3.0107 8 7 3.0537 3.2311 -3.6621 9 14 5.6248 2.1997 -3.6990 10 1 5.6186 1.0038 -4.5793 11 1 6.0401 3.3899 -4.4839 12 1 6.5787 1.9865 -2.5810 13 6 2.3375 1.9831 1.1629 14 8 2.6464 3.1597 1.1740 15 6 2.3124 1.2169 2.4194 16 6 3.0446 -0.0122 2.6173 17 6 2.8787 -0.5274 3.8297 18 6 3.5247 -1.7985 4.3176 19 16 1.8028 0.4775 4.7851 20 6 1.5935 1.5910 3.5116 21 6 0.7337 2.8263 3.5880 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.4190 1.7451 -1.9767 28 1 2.0049 3.1730 -1.0900 29 1 3.3122 3.6454 -4.5001 30 1 3.6665 -0.4636 1.8584 31 1 4.4862 -1.5650 4.7749 32 1 2.8781 -2.2750 5.0545 33 1 3.6770 -2.4747 3.4765 34 1 0.2757 2.8899 4.5750 35 1 1.3497 3.7090 3.4158 36 1 -0.0462 2.7737 2.8283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:12 Heat of formation + Delta-G solvation = -37.131532 kcal Electronic energy + Delta-G solvation = -18423.550531 eV Core-core repulsion = 15612.156484 eV Total energy + Delta-G solvation = -2811.394047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06011 -38.18325 -37.02135 -34.88575 -34.02113 -31.65219 -30.53230 -29.19338 -26.47019 -25.37752 -24.34927 -23.50128 -20.86391 -19.49405 -18.62819 -18.07327 -17.41454 -17.28757 -16.38216 -15.88770 -15.24581 -15.05695 -14.76500 -14.42722 -14.36772 -14.18763 -13.94456 -13.81017 -13.65650 -13.28668 -13.15465 -12.85105 -12.70039 -12.58893 -12.52021 -12.44337 -12.21099 -11.99104 -11.74932 -11.72827 -10.73456 -10.66378 -9.55584 -9.51740 -9.18264 -8.24603 -6.40187 -0.09010 0.57615 0.91253 1.15889 1.34868 1.38136 1.48679 2.01779 2.30983 2.48349 3.04594 3.70992 3.74825 4.09374 4.15279 4.25780 4.37194 4.51078 4.53958 4.58843 4.63755 4.82361 4.86508 4.91856 4.94537 5.00246 5.07264 5.09306 5.20118 5.24780 5.31332 5.43232 5.54574 5.82557 6.03159 6.65890 6.72905 7.23290 7.40338 8.82711 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.005572 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.329100 B = 5024.096193 C = 5303.603191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.096 3.904 3 N -0.592 5.592 4 C 0.262 3.738 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.565 3.435 14 O -0.595 6.595 15 C -0.169 4.169 16 C -0.129 4.129 17 C -0.190 4.190 18 C -0.081 4.081 19 S 0.234 5.766 20 C -0.187 4.187 21 C -0.084 4.084 22 H 0.096 0.904 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.024 0.976 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -12.930 17.595 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.198 1.198 13 C 0.352 3.648 14 O -0.478 6.478 15 C -0.186 4.186 16 C -0.158 4.158 17 C -0.307 4.307 18 C -0.139 4.139 19 S 0.500 5.500 20 C -0.306 4.306 21 C -0.142 4.142 22 H 0.115 0.885 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.042 0.958 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.656 -12.336 18.872 23.022 hybrid contribution 1.319 0.820 -2.632 3.056 sum -3.337 -11.516 16.239 20.186 Atomic orbital electron populations 1.22085 0.94775 1.03373 1.01196 1.21861 0.95368 0.81604 1.03807 1.48174 1.62539 1.15099 1.06364 1.18753 0.96048 0.91103 0.80063 1.21683 0.99229 1.30960 1.06537 0.92894 1.25880 1.01947 0.94285 0.96944 1.70057 1.37175 1.32687 1.16783 0.85382 0.78699 0.78296 0.78240 1.18546 1.20484 1.19829 1.18292 0.76428 0.86044 0.84023 1.90706 1.51105 1.18442 1.87505 1.20089 1.05185 0.98737 0.94624 1.20995 1.02244 0.94091 0.98452 1.24685 1.05099 1.03896 0.97001 1.20487 1.00458 0.90342 1.02629 1.82395 1.42648 1.12672 1.12281 1.24515 1.03896 1.03939 0.98256 1.20379 0.97632 0.92401 1.03826 0.88520 0.93219 0.93999 0.90795 0.88208 0.95790 0.98428 0.92310 0.83759 0.89733 0.89208 0.89479 0.88075 0.91917 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 10.24 71.98 0.74 -3.85 16 2 C 0.10 3.34 6.05 86.38 0.52 3.87 16 3 N -0.59 -27.55 2.46 -830.29 -2.04 -29.59 16 4 C 0.26 14.88 5.23 85.63 0.45 15.33 16 5 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.50 5.46 84.66 0.46 0.97 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.56 26.64 6.93 86.60 0.60 27.24 16 14 O -0.60 -33.86 16.14 -4.19 -0.07 -33.93 16 15 C -0.17 -6.07 4.90 -19.87 -0.10 -6.17 16 16 C -0.13 -3.73 7.99 22.67 0.18 -3.55 16 17 C -0.19 -4.07 6.44 24.51 0.16 -3.91 16 18 C -0.08 -1.07 10.35 71.24 0.74 -0.33 16 19 S 0.23 4.73 22.93 -56.49 -1.30 3.43 16 20 C -0.19 -5.54 6.34 25.17 0.16 -5.38 16 21 C -0.08 -2.36 9.62 71.23 0.68 -1.67 16 22 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 26 H 0.10 2.99 4.53 -2.39 -0.01 2.98 16 27 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 28 H 0.00 -0.16 7.35 -2.39 -0.02 -0.18 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.14 4.14 7.75 -2.91 -0.02 4.12 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 2.00 8.11 -2.39 -0.02 1.98 16 35 H 0.06 2.08 7.89 -2.38 -0.02 2.06 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -76.57 319.52 4.80 -71.76 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.06 Total: 7.37 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 4.83 Total: -9.81 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.75 Total: -86.61 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.07 Total: -33.93 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.30 Total: 3.43 kcal Total: -76.57 4.80 -71.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.630 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds