Wall clock time and date at job start Mon Mar 30 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46490 * 109.47331 * 2 1 4 4 C 1.46501 * 120.00212 * 269.99751 * 3 2 1 5 5 C 1.50694 * 109.47269 * 270.00205 * 4 3 2 6 6 H 1.08011 * 120.00105 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00255 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47600 * 59.99581 * 9 7 5 11 11 H 1.48500 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47249 * 299.99810 * 9 7 5 13 13 C 1.34783 * 120.00252 * 89.99905 * 3 2 1 14 14 O 1.21276 * 119.99950 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99432 * 359.97438 * 13 3 2 16 16 C 1.53005 * 109.46526 * 180.02562 * 15 13 3 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 13 18 18 C 1.38423 * 122.53613 * 270.00211 * 17 16 15 19 19 C 1.33390 * 114.91977 * 180.02562 * 18 17 16 20 20 S 1.75887 * 109.59565 * 359.75483 * 19 18 17 21 21 C 1.33391 * 122.54338 * 90.02238 * 17 16 15 22 22 H 1.08999 * 109.47089 * 300.00178 * 1 2 3 23 23 H 1.09000 * 109.46872 * 60.00190 * 1 2 3 24 24 H 1.08992 * 109.47478 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47089 * 239.99822 * 2 1 3 26 26 H 1.08998 * 109.46737 * 120.00344 * 2 1 3 27 27 H 1.09004 * 109.46979 * 29.99989 * 4 3 2 28 28 H 1.08999 * 109.47418 * 150.00132 * 4 3 2 29 29 H 0.97000 * 119.99887 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.46984 * 60.00404 * 15 13 3 31 31 H 1.08994 * 109.47395 * 299.99944 * 15 13 3 32 32 H 1.08994 * 109.47301 * 60.00425 * 16 15 13 33 33 H 1.09003 * 109.46866 * 299.99861 * 16 15 13 34 34 H 1.08001 * 122.53963 * 0.04211 * 18 17 16 35 35 H 1.07998 * 125.20164 * 180.02562 * 19 18 17 36 36 H 1.08002 * 125.19887 * 359.95301 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1493 2.3895 -2.8779 8 7 3.3491 3.1248 -3.6185 9 14 5.9133 2.0953 -3.4174 10 1 6.1404 0.6385 -3.5946 11 1 6.1609 2.7954 -4.7034 12 1 6.8412 2.6186 -2.3829 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9913 1.3062 2.4723 16 6 2.3222 2.2439 3.6352 17 6 2.0711 1.5335 4.9403 18 6 0.8466 1.5712 5.5849 19 6 0.7931 0.8895 6.7302 20 16 2.3527 0.1391 7.0434 21 6 3.0119 0.8211 5.5622 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0958 3.1410 -1.1384 29 1 3.6749 3.5146 -4.4448 30 1 2.6211 0.4186 2.5302 31 1 0.9432 1.0125 2.5299 32 1 1.6921 3.1313 3.5771 33 1 3.3703 2.5379 3.5778 34 1 -0.0012 2.1113 5.1902 35 1 -0.0763 0.8070 7.3656 36 1 4.0224 0.6808 5.2079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208360.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:19 Heat of formation + Delta-G solvation = -15.941285 kcal Electronic energy + Delta-G solvation = -17798.239241 eV Core-core repulsion = 14987.764072 eV Total energy + Delta-G solvation = -2810.475169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28110 -38.14908 -35.27181 -33.00716 -32.38025 -30.06066 -29.24100 -27.22967 -25.11625 -23.04469 -22.88901 -21.70694 -18.74944 -18.20092 -17.66606 -16.47354 -16.23850 -15.50172 -15.24345 -14.71148 -14.29659 -13.62931 -13.36913 -13.19699 -13.11086 -12.79654 -12.60095 -12.11307 -12.00888 -11.79916 -11.76338 -11.47345 -11.15142 -10.94655 -10.85324 -10.79442 -10.57364 -10.46675 -10.10676 -9.62523 -8.95098 -8.82094 -8.42035 -8.40138 -7.62113 -6.02246 -4.06900 0.92621 1.58076 1.89672 2.63358 3.32840 3.37284 3.39435 3.50022 4.00934 4.46512 4.81070 4.94949 5.20661 5.25324 5.31966 5.35384 5.35721 5.50784 5.53962 5.66798 5.76878 5.85573 5.89800 6.04355 6.10549 6.24535 6.26335 6.45497 6.52073 6.53547 7.10895 7.47862 7.59209 7.94496 8.26545 8.47982 8.92785 9.14835 9.58173 11.05806 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.004000 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.784345 B = 6998.349665 C = 7418.181416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.544 6.544 15 C -0.132 4.132 16 C -0.046 4.046 17 C -0.094 4.094 18 C -0.127 4.127 19 C -0.214 4.214 20 S 0.075 5.925 21 C -0.209 4.209 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.263 0.737 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -8.190 17.803 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.422 6.422 15 C -0.173 4.173 16 C -0.087 4.087 17 C -0.106 4.106 18 C -0.157 4.157 19 C -0.349 4.349 20 S 0.338 5.662 21 C -0.344 4.344 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.330 -8.408 18.773 21.250 hybrid contribution 0.360 0.580 -1.521 1.668 sum -4.970 -7.828 17.252 19.586 Atomic orbital electron populations 1.22216 0.96889 1.01335 1.02272 1.21397 0.93449 0.84298 1.02601 1.48264 1.63713 1.13215 1.07818 1.19245 0.96154 0.93635 0.78282 1.21412 0.96981 1.31888 1.06218 0.92572 1.24933 0.97815 0.94946 0.96405 1.69922 1.35709 1.33493 1.14327 0.86568 0.84859 0.78226 0.77818 1.20271 1.21181 1.20198 1.20358 0.78421 0.86955 0.85225 1.90663 1.45983 1.18209 1.87337 1.21683 1.03155 0.99579 0.92883 1.20083 1.03644 0.97023 0.87907 1.19097 0.92976 0.99998 0.98547 1.20179 0.98502 1.01707 0.95330 1.25556 1.01147 1.05734 1.02491 1.84197 1.05482 1.52396 1.24105 1.25511 1.04032 1.05664 0.99223 0.93045 0.92113 0.92262 0.90104 0.91706 0.95136 0.93953 0.92693 0.89578 0.89596 0.90132 0.90148 0.84150 0.82052 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.64 2.46 -175.06 -0.43 -13.07 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.50 10.38 7.67 -10.98 -0.08 10.30 16 14 O -0.54 -13.63 15.56 5.56 0.09 -13.54 16 15 C -0.13 -1.94 4.24 -27.88 -0.12 -2.06 16 16 C -0.05 -0.65 4.76 -27.88 -0.13 -0.78 16 17 C -0.09 -1.12 5.06 -106.25 -0.54 -1.66 16 18 C -0.13 -1.35 9.98 -41.21 -0.41 -1.76 16 19 C -0.21 -2.02 11.23 29.04 0.33 -1.69 16 20 S 0.07 0.72 23.34 -107.50 -2.51 -1.79 16 21 C -0.21 -2.32 10.98 29.04 0.32 -2.00 16 22 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 26 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 27 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.09 1.16 7.40 -51.93 -0.38 0.77 16 31 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 32 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 33 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -32.72 320.13 -8.23 -40.95 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.19 Total: -1.16 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.73 Total: -7.11 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.31 Total: -39.14 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.72 -8.23 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208360.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.008 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds