Wall clock time and date at job start Mon Mar 30 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46490 * 109.47331 * 2 1 4 4 C 1.46501 * 120.00212 * 269.99751 * 3 2 1 5 5 C 1.50694 * 109.47269 * 270.00205 * 4 3 2 6 6 H 1.08011 * 120.00105 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00255 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47600 * 59.99581 * 9 7 5 11 11 H 1.48500 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47249 * 299.99810 * 9 7 5 13 13 C 1.34783 * 120.00252 * 89.99905 * 3 2 1 14 14 O 1.21276 * 119.99950 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99432 * 359.97438 * 13 3 2 16 16 C 1.53005 * 109.46526 * 180.02562 * 15 13 3 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 13 18 18 C 1.38423 * 122.53613 * 270.00211 * 17 16 15 19 19 C 1.33390 * 114.91977 * 180.02562 * 18 17 16 20 20 S 1.75887 * 109.59565 * 359.75483 * 19 18 17 21 21 C 1.33391 * 122.54338 * 90.02238 * 17 16 15 22 22 H 1.08999 * 109.47089 * 300.00178 * 1 2 3 23 23 H 1.09000 * 109.46872 * 60.00190 * 1 2 3 24 24 H 1.08992 * 109.47478 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47089 * 239.99822 * 2 1 3 26 26 H 1.08998 * 109.46737 * 120.00344 * 2 1 3 27 27 H 1.09004 * 109.46979 * 29.99989 * 4 3 2 28 28 H 1.08999 * 109.47418 * 150.00132 * 4 3 2 29 29 H 0.97000 * 119.99887 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.46984 * 60.00404 * 15 13 3 31 31 H 1.08994 * 109.47395 * 299.99944 * 15 13 3 32 32 H 1.08994 * 109.47301 * 60.00425 * 16 15 13 33 33 H 1.09003 * 109.46866 * 299.99861 * 16 15 13 34 34 H 1.08001 * 122.53963 * 0.04211 * 18 17 16 35 35 H 1.07998 * 125.20164 * 180.02562 * 19 18 17 36 36 H 1.08002 * 125.19887 * 359.95301 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1493 2.3895 -2.8779 8 7 3.3491 3.1248 -3.6185 9 14 5.9133 2.0953 -3.4174 10 1 6.1404 0.6385 -3.5946 11 1 6.1609 2.7954 -4.7034 12 1 6.8412 2.6186 -2.3829 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9913 1.3062 2.4723 16 6 2.3222 2.2439 3.6352 17 6 2.0711 1.5335 4.9403 18 6 0.8466 1.5712 5.5849 19 6 0.7931 0.8895 6.7302 20 16 2.3527 0.1391 7.0434 21 6 3.0119 0.8211 5.5622 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0958 3.1410 -1.1384 29 1 3.6749 3.5146 -4.4448 30 1 2.6211 0.4186 2.5302 31 1 0.9432 1.0125 2.5299 32 1 1.6921 3.1313 3.5771 33 1 3.3703 2.5379 3.5778 34 1 -0.0012 2.1113 5.1902 35 1 -0.0763 0.8070 7.3656 36 1 4.0224 0.6808 5.2079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208360.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:19 Heat of formation + Delta-G solvation = -35.250421 kcal Electronic energy + Delta-G solvation = -17799.076548 eV Core-core repulsion = 14987.764072 eV Total energy + Delta-G solvation = -2811.312476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81675 -39.12970 -36.95289 -34.96414 -33.70936 -31.58061 -30.24713 -28.99327 -26.48234 -24.71677 -24.08416 -22.97746 -19.79685 -19.59046 -18.66831 -18.46392 -17.69784 -17.18047 -16.56995 -16.19427 -15.82334 -14.95482 -14.71494 -14.53382 -14.08623 -14.02851 -13.81281 -13.63381 -13.29515 -13.20128 -13.05572 -12.83988 -12.79417 -12.60197 -12.40808 -12.19036 -12.00350 -11.75759 -11.71555 -11.58720 -10.64244 -10.57284 -9.66267 -9.41726 -9.22205 -8.22151 -6.37344 0.14080 0.82203 1.12194 1.36079 1.40564 1.47870 1.78632 1.87741 2.33459 2.49915 3.07038 3.69156 4.00756 4.12809 4.16157 4.26883 4.32198 4.44873 4.61126 4.64043 4.68093 4.73867 4.90182 4.99278 5.01560 5.06600 5.15983 5.21665 5.24850 5.40867 5.54118 5.58925 5.64908 5.87901 6.07379 6.70372 6.83523 7.28759 7.52045 8.84734 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.004000 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.784345 B = 6998.349665 C = 7418.181416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.493 3.507 14 O -0.600 6.600 15 C -0.114 4.114 16 C -0.040 4.040 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.208 4.208 20 S 0.101 5.899 21 C -0.222 4.222 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.020 0.980 28 H -0.005 1.005 29 H 0.267 0.733 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.150 0.850 35 H 0.188 0.812 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 -10.541 19.559 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.335 5.335 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.482 6.482 15 C -0.154 4.154 16 C -0.080 4.080 17 C -0.116 4.116 18 C -0.173 4.173 19 C -0.343 4.343 20 S 0.365 5.635 21 C -0.358 4.358 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.038 0.962 28 H 0.013 0.987 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.205 0.795 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.439 -10.813 20.550 23.849 hybrid contribution 0.349 1.307 -2.009 2.422 sum -5.090 -9.506 18.540 21.448 Atomic orbital electron populations 1.22150 0.94599 1.03463 1.01677 1.21734 0.95316 0.81376 1.03822 1.48313 1.63826 1.15096 1.06300 1.18680 0.95224 0.91475 0.80629 1.21705 0.97936 1.32088 1.06569 0.92850 1.25877 1.02465 0.94446 0.96410 1.70048 1.37852 1.34228 1.14768 0.85467 0.78929 0.79054 0.77357 1.18391 1.20304 1.20324 1.21458 0.76927 0.86531 0.86787 1.90629 1.48407 1.20907 1.88258 1.21634 1.05242 0.99423 0.89062 1.19919 1.02156 0.96821 0.89137 1.18930 0.94075 1.00704 0.97873 1.20274 0.98369 1.02691 0.96004 1.25906 1.01839 1.04434 1.02093 1.84147 1.05281 1.51512 1.22597 1.25696 1.04306 1.05646 1.00109 0.91976 0.94415 0.88681 0.91196 0.88138 0.96191 0.98696 0.92403 0.87433 0.86755 0.91382 0.92091 0.83239 0.79498 0.81377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.10 3.06 5.93 86.38 0.51 3.57 16 3 N -0.60 -25.93 2.46 -826.17 -2.03 -27.96 16 4 C 0.26 14.43 5.16 85.63 0.44 14.87 16 5 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.40 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 9 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.49 20.65 7.67 87.66 0.67 21.32 16 14 O -0.60 -31.57 15.56 -3.02 -0.05 -31.61 16 15 C -0.11 -3.16 4.24 29.85 0.13 -3.04 16 16 C -0.04 -1.10 4.76 29.85 0.14 -0.96 16 17 C -0.10 -2.29 5.06 -20.92 -0.11 -2.40 16 18 C -0.14 -2.71 9.98 21.22 0.21 -2.50 16 19 C -0.21 -3.25 11.23 66.72 0.75 -2.50 16 20 S 0.10 1.66 23.34 -56.49 -1.32 0.35 16 21 C -0.22 -4.51 10.98 66.72 0.73 -3.78 16 22 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 26 H 0.10 2.37 6.44 -2.39 -0.02 2.36 16 27 H 0.02 1.12 8.07 -2.38 -0.02 1.11 16 28 H -0.01 -0.33 7.42 -2.39 -0.02 -0.34 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.11 2.58 7.40 -2.39 -0.02 2.56 16 31 H 0.11 2.57 7.18 -2.39 -0.02 2.55 16 32 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -74.26 320.13 4.89 -69.37 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.06 Total: 8.78 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.92 Total: -9.52 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.74 Total: -84.80 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.61 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.35 kcal Total: -74.26 4.89 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208360.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.119 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds