Wall clock time and date at job start Mon Mar 30 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46496 * 109.47530 * 2 1 4 4 C 1.46497 * 119.99925 * 276.33537 * 3 2 1 5 5 C 1.50695 * 109.47101 * 269.71939 * 4 3 2 6 6 H 1.07999 * 120.00005 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00221 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99401 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46894 * 119.99882 * 9 7 5 12 12 H 1.48499 * 109.47174 * 239.99560 * 9 7 5 13 13 C 1.34780 * 119.99934 * 96.05170 * 3 2 1 14 14 O 1.21606 * 119.99994 * 174.96015 * 13 3 2 15 15 C 1.47391 * 120.00264 * 354.96619 * 13 3 2 16 16 C 1.40229 * 120.21217 * 92.87144 * 15 13 3 17 17 O 1.35653 * 120.13975 * 359.97438 * 16 15 13 18 18 C 1.38589 * 119.72368 * 180.02562 * 16 15 13 19 19 C 1.38179 * 120.15965 * 0.02562 * 18 16 15 20 20 C 1.38375 * 120.43291 * 359.97109 * 19 18 16 21 21 C 1.38175 * 120.26895 * 359.76901 * 20 19 18 22 22 F 1.35102 * 120.08195 * 180.27501 * 21 20 19 23 23 H 1.08999 * 109.46903 * 64.98696 * 1 2 3 24 24 H 1.08998 * 109.47513 * 184.98479 * 1 2 3 25 25 H 1.08996 * 109.47793 * 304.98524 * 1 2 3 26 26 H 1.08997 * 109.47528 * 240.00009 * 2 1 3 27 27 H 1.09005 * 109.46870 * 120.00123 * 2 1 3 28 28 H 1.08998 * 109.47108 * 29.72167 * 4 3 2 29 29 H 1.09004 * 109.46822 * 149.72278 * 4 3 2 30 30 H 0.97002 * 119.99260 * 180.02562 * 8 7 5 31 31 H 0.96696 * 113.99563 * 85.03773 * 17 16 15 32 32 H 1.07997 * 119.92011 * 180.02562 * 18 16 15 33 33 H 1.08002 * 119.78623 * 180.02562 * 19 18 16 34 34 H 1.07994 * 119.86353 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1305 2.1184 -1.2610 5 6 3.5027 1.9059 -1.8466 6 1 4.2193 1.2836 -1.3314 7 6 3.8433 2.5060 -3.0404 8 7 2.9703 3.2635 -3.6681 9 14 5.5439 2.2421 -3.7667 10 1 6.3309 1.3538 -2.8741 11 1 5.4179 1.6119 -5.1055 12 1 6.2344 3.5502 -3.8983 13 6 2.3590 1.9754 1.1607 14 8 2.8502 3.0879 1.1530 15 6 2.1364 1.2771 2.4394 16 6 3.1577 0.5019 3.0073 17 8 4.3563 0.3907 2.3817 18 6 2.9372 -0.1508 4.2098 19 6 1.7160 -0.0391 4.8466 20 6 0.7036 0.7241 4.2922 21 6 0.9060 1.3868 3.0967 22 9 -0.0832 2.1354 2.5616 23 1 -0.3633 0.4345 -0.9313 24 1 -0.3634 -1.0237 0.0893 25 1 -0.3634 0.5892 0.8419 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 1.3769 1.7578 -1.9610 29 1 1.9753 3.1812 -1.0754 30 1 3.2098 3.6853 -4.5081 31 1 4.9717 1.1095 2.5803 32 1 3.7217 -0.7483 4.6501 33 1 1.5509 -0.5501 5.7837 34 1 -0.2471 0.8054 4.7980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123165474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:42 Heat of formation + Delta-G solvation = -95.290537 kcal Electronic energy + Delta-G solvation = -20787.702871 eV Core-core repulsion = 17407.573684 eV Total energy + Delta-G solvation = -3380.129187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.91009 -40.11510 -38.26647 -36.57724 -35.27358 -32.78640 -31.02666 -30.04796 -29.85078 -27.12630 -24.17137 -23.05693 -22.63010 -22.14758 -19.19986 -18.46602 -17.01335 -16.92533 -16.33096 -16.31349 -15.94279 -15.27625 -15.06556 -14.66127 -14.26157 -13.95422 -13.69938 -13.38058 -13.07037 -12.46215 -12.20958 -12.10103 -11.95437 -11.77703 -11.53677 -11.20291 -10.91577 -10.81295 -10.67217 -10.56211 -10.10799 -9.59524 -9.22046 -8.82442 -8.76487 -8.40872 -7.67622 -6.01557 -4.05547 0.87795 0.97627 3.20892 3.25073 3.32131 3.39403 3.44631 3.80636 3.97767 4.34221 4.47085 4.66899 4.83374 4.95239 5.09275 5.32764 5.42787 5.50280 5.69487 5.75702 5.86228 5.91446 6.04491 6.10743 6.13720 6.30657 6.55340 6.59494 7.06177 7.43474 7.53341 7.59447 7.94960 8.25748 8.36704 8.87339 9.03869 9.58930 11.06852 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.006259 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.734578 B = 4472.547863 C = 4943.835589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.579 5.579 4 C 0.246 3.754 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.557 3.443 14 O -0.532 6.532 15 C -0.174 4.174 16 C 0.168 3.832 17 O -0.485 6.485 18 C -0.158 4.158 19 C -0.069 4.069 20 C -0.168 4.168 21 C 0.143 3.857 22 F -0.126 7.126 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.402 0.598 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -9.177 16.216 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.309 5.309 4 C 0.127 3.873 5 C -0.561 4.561 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.341 3.659 14 O -0.409 6.409 15 C -0.178 4.178 16 C 0.122 3.878 17 O -0.296 6.296 18 C -0.177 4.177 19 C -0.087 4.087 20 C -0.187 4.187 21 C 0.123 3.877 22 F -0.105 7.105 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.987 -8.948 15.729 18.530 hybrid contribution 0.902 0.413 -0.462 1.095 sum -3.084 -8.535 15.267 17.761 Atomic orbital electron populations 1.22239 0.96639 1.01346 1.02688 1.21413 0.93638 0.83905 1.02670 1.48182 1.61602 1.13265 1.07850 1.19335 0.97240 0.92639 0.78054 1.21471 0.98773 1.30098 1.05759 0.92159 1.24945 0.97472 0.94957 0.96824 1.69952 1.34638 1.31999 1.16933 0.86427 0.84171 0.77993 0.78752 1.19741 1.21000 1.20915 1.17662 0.79549 0.85687 0.82981 1.90795 1.43670 1.19648 1.86796 1.20772 0.94807 1.02765 0.99503 1.18196 0.86056 0.93562 0.90019 1.84730 1.23092 1.51338 1.70489 1.21372 0.99061 1.02897 0.94350 1.20898 0.91770 0.96663 0.99415 1.21060 1.01574 1.00585 0.95487 1.17482 0.84333 0.92917 0.92934 1.91545 1.59429 1.73729 1.85747 0.91905 0.92210 0.92871 0.89907 0.91697 0.94681 0.93968 0.92808 0.73991 0.84346 0.84387 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.23 37.15 0.38 -2.29 16 2 C 0.11 1.97 5.99 -4.05 -0.02 1.94 16 3 N -0.58 -13.18 2.46 -176.35 -0.43 -13.61 16 4 C 0.25 6.68 5.14 -5.20 -0.03 6.65 16 5 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.56 12.56 6.27 -12.53 -0.08 12.48 16 14 O -0.53 -14.18 16.74 5.27 0.09 -14.09 16 15 C -0.17 -3.03 3.89 -104.79 -0.41 -3.43 16 16 C 0.17 2.45 6.29 -38.70 -0.24 2.21 16 17 O -0.48 -7.31 12.95 -18.66 -0.24 -7.56 16 18 C -0.16 -1.70 9.97 -39.47 -0.39 -2.09 16 19 C -0.07 -0.64 10.02 -39.55 -0.40 -1.03 16 20 C -0.17 -1.85 10.01 -39.55 -0.40 -2.24 16 21 C 0.14 2.19 6.76 -38.97 -0.26 1.92 16 22 F -0.13 -2.14 15.61 2.25 0.04 -2.10 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.84 6.27 -51.93 -0.33 0.52 16 26 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 27 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 28 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.04 1.28 7.50 -51.93 -0.39 0.89 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.40 4.72 9.06 45.56 0.41 5.13 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -35.06 303.35 -5.67 -40.73 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.14 Total: 0.91 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.27 Total: 0.26 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.30 Total: -39.93 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.15 Total: -21.64 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.06 -5.67 -40.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123165474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.558 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds