Wall clock time and date at job start Mon Mar 30 2020 00:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46496 * 109.47530 * 2 1 4 4 C 1.46497 * 119.99925 * 276.33537 * 3 2 1 5 5 C 1.50695 * 109.47101 * 269.71939 * 4 3 2 6 6 H 1.07999 * 120.00005 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00221 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99401 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46894 * 119.99882 * 9 7 5 12 12 H 1.48499 * 109.47174 * 239.99560 * 9 7 5 13 13 C 1.34780 * 119.99934 * 96.05170 * 3 2 1 14 14 O 1.21606 * 119.99994 * 174.96015 * 13 3 2 15 15 C 1.47391 * 120.00264 * 354.96619 * 13 3 2 16 16 C 1.40229 * 120.21217 * 92.87144 * 15 13 3 17 17 O 1.35653 * 120.13975 * 359.97438 * 16 15 13 18 18 C 1.38589 * 119.72368 * 180.02562 * 16 15 13 19 19 C 1.38179 * 120.15965 * 0.02562 * 18 16 15 20 20 C 1.38375 * 120.43291 * 359.97109 * 19 18 16 21 21 C 1.38175 * 120.26895 * 359.76901 * 20 19 18 22 22 F 1.35102 * 120.08195 * 180.27501 * 21 20 19 23 23 H 1.08999 * 109.46903 * 64.98696 * 1 2 3 24 24 H 1.08998 * 109.47513 * 184.98479 * 1 2 3 25 25 H 1.08996 * 109.47793 * 304.98524 * 1 2 3 26 26 H 1.08997 * 109.47528 * 240.00009 * 2 1 3 27 27 H 1.09005 * 109.46870 * 120.00123 * 2 1 3 28 28 H 1.08998 * 109.47108 * 29.72167 * 4 3 2 29 29 H 1.09004 * 109.46822 * 149.72278 * 4 3 2 30 30 H 0.97002 * 119.99260 * 180.02562 * 8 7 5 31 31 H 0.96696 * 113.99563 * 85.03773 * 17 16 15 32 32 H 1.07997 * 119.92011 * 180.02562 * 18 16 15 33 33 H 1.08002 * 119.78623 * 180.02562 * 19 18 16 34 34 H 1.07994 * 119.86353 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1305 2.1184 -1.2610 5 6 3.5027 1.9059 -1.8466 6 1 4.2193 1.2836 -1.3314 7 6 3.8433 2.5060 -3.0404 8 7 2.9703 3.2635 -3.6681 9 14 5.5439 2.2421 -3.7667 10 1 6.3309 1.3538 -2.8741 11 1 5.4179 1.6119 -5.1055 12 1 6.2344 3.5502 -3.8983 13 6 2.3590 1.9754 1.1607 14 8 2.8502 3.0879 1.1530 15 6 2.1364 1.2771 2.4394 16 6 3.1577 0.5019 3.0073 17 8 4.3563 0.3907 2.3817 18 6 2.9372 -0.1508 4.2098 19 6 1.7160 -0.0391 4.8466 20 6 0.7036 0.7241 4.2922 21 6 0.9060 1.3868 3.0967 22 9 -0.0832 2.1354 2.5616 23 1 -0.3633 0.4345 -0.9313 24 1 -0.3634 -1.0237 0.0893 25 1 -0.3634 0.5892 0.8419 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 1.3769 1.7578 -1.9610 29 1 1.9753 3.1812 -1.0754 30 1 3.2098 3.6853 -4.5081 31 1 4.9717 1.1095 2.5803 32 1 3.7217 -0.7483 4.6501 33 1 1.5509 -0.5501 5.7837 34 1 -0.2471 0.8054 4.7980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123165474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:41 Heat of formation + Delta-G solvation = -121.064790 kcal Electronic energy + Delta-G solvation = -20788.820527 eV Core-core repulsion = 17407.573684 eV Total energy + Delta-G solvation = -3381.246842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.09609 -41.44084 -39.74756 -37.60509 -37.08930 -34.95393 -32.26268 -31.67785 -30.81869 -29.10121 -25.78995 -24.68591 -23.69200 -23.61814 -20.67390 -19.63202 -18.73130 -18.40092 -18.00286 -17.62697 -17.36479 -16.72337 -16.43217 -16.01115 -15.79806 -15.47001 -14.95117 -14.77445 -14.65898 -14.27776 -13.69161 -13.38883 -13.26831 -13.17199 -13.04319 -12.74587 -12.70484 -12.57436 -12.23707 -12.03751 -11.99193 -11.73855 -10.91246 -10.68469 -9.96402 -9.72857 -9.58751 -8.26197 -6.41063 -0.14151 0.02702 1.34214 1.36678 1.48607 1.54149 2.14540 2.35924 2.43154 2.87937 3.03140 3.33876 3.42725 3.90410 3.99172 4.00530 4.26045 4.29603 4.46559 4.57672 4.78523 4.83768 4.85614 4.94374 5.02270 5.09985 5.19520 5.24307 5.26294 5.50662 5.69624 5.75093 6.00315 6.56246 6.59096 6.67802 7.14723 7.32153 8.81996 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.006259 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.734578 B = 4472.547863 C = 4943.835589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.587 5.587 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.973 3.027 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.279 1.279 13 C 0.552 3.448 14 O -0.592 6.592 15 C -0.208 4.208 16 C 0.153 3.847 17 O -0.504 6.504 18 C -0.141 4.141 19 C -0.042 4.042 20 C -0.152 4.152 21 C 0.119 3.881 22 F -0.147 7.147 23 H 0.045 0.955 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.026 0.974 29 H -0.005 1.005 30 H 0.268 0.732 31 H 0.410 0.590 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 -12.026 18.826 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.316 5.316 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.796 3.204 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.205 1.205 13 C 0.340 3.660 14 O -0.474 6.474 15 C -0.212 4.212 16 C 0.107 3.893 17 O -0.317 6.317 18 C -0.159 4.159 19 C -0.059 4.059 20 C -0.170 4.170 21 C 0.099 3.901 22 F -0.125 7.125 23 H 0.065 0.935 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.044 0.956 29 H 0.013 0.987 30 H 0.077 0.923 31 H 0.270 0.730 32 H 0.190 0.810 33 H 0.210 0.790 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.756 -11.841 18.356 22.165 hybrid contribution 0.782 1.269 -1.168 1.894 sum -2.974 -10.572 17.188 20.397 Atomic orbital electron populations 1.22157 0.94418 1.03636 1.01655 1.21639 0.95433 0.81390 1.03234 1.48216 1.61826 1.14786 1.06745 1.18787 0.96493 0.90568 0.80019 1.21657 0.99351 1.30555 1.06368 0.92953 1.25908 1.01932 0.94272 0.97070 1.70070 1.36838 1.32529 1.17430 0.85293 0.78582 0.78108 0.78372 1.19151 1.19197 1.20462 1.18506 0.77732 0.85126 0.84634 1.90728 1.46235 1.22413 1.88018 1.20469 0.97433 1.05619 0.97691 1.18507 0.85044 0.94305 0.91470 1.84687 1.23662 1.51888 1.71442 1.21748 1.00669 1.01329 0.92185 1.21547 0.89817 0.94338 1.00228 1.21495 1.03517 0.98782 0.93237 1.17886 0.83378 0.94257 0.94576 1.91490 1.60071 1.74597 1.86386 0.93549 0.88199 0.93186 0.90601 0.89666 0.95604 0.98721 0.92281 0.73043 0.81007 0.79023 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 10.23 71.98 0.74 -4.25 16 2 C 0.11 3.92 5.99 86.38 0.52 4.44 16 3 N -0.59 -28.29 2.46 -830.12 -2.04 -30.33 16 4 C 0.26 15.28 5.14 85.63 0.44 15.72 16 5 C -0.54 -32.95 9.39 25.60 0.24 -32.71 16 6 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 9 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.55 26.46 6.27 86.65 0.54 27.00 16 14 O -0.59 -34.17 16.74 -4.05 -0.07 -34.24 16 15 C -0.21 -7.29 3.89 -19.97 -0.08 -7.36 16 16 C 0.15 4.25 6.29 22.84 0.14 4.39 16 17 O -0.50 -15.12 12.95 -89.69 -1.16 -16.28 16 18 C -0.14 -2.38 9.97 22.34 0.22 -2.16 16 19 C -0.04 -0.51 10.02 22.29 0.22 -0.29 16 20 C -0.15 -2.69 10.01 22.29 0.22 -2.47 16 21 C 0.12 3.51 6.76 22.66 0.15 3.66 16 22 F -0.15 -5.08 15.61 44.97 0.70 -4.38 16 23 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.05 1.59 6.27 -2.39 -0.01 1.57 16 26 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 27 H 0.09 2.82 6.43 -2.38 -0.02 2.80 16 28 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 29 H -0.01 -0.35 7.50 -2.38 -0.02 -0.37 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.41 9.97 9.06 -74.06 -0.67 9.30 16 32 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.19 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -83.45 303.35 4.03 -79.41 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.46 Total: 8.26 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 3.83 Total: 6.86 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.76 Total: -88.08 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -1.23 Total: -50.52 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.70 Total: -4.38 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -83.45 4.03 -79.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123165474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.650 kcal (2) G-P(sol) polarization free energy of solvation -83.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds