Wall clock time and date at job start Mon Mar 30 2020 00:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46692 * 2 1 4 4 C 1.50696 * 109.47017 * 119.99553 * 2 1 3 5 5 H 1.08002 * 120.00034 * 120.00363 * 4 2 1 6 6 C 1.37878 * 120.00216 * 300.00711 * 4 2 1 7 7 N 1.31517 * 120.00124 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00083 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47107 * 89.99913 * 8 6 4 10 10 H 1.48498 * 109.47489 * 210.00639 * 8 6 4 11 11 H 1.48505 * 109.46797 * 330.00446 * 8 6 4 12 12 N 1.46501 * 109.47459 * 239.99924 * 2 1 3 13 13 C 1.46502 * 119.99679 * 300.00041 * 12 2 1 14 14 C 1.34776 * 119.99888 * 119.99856 * 12 2 1 15 15 O 1.21605 * 120.00159 * 0.02562 * 14 12 2 16 16 C 1.47393 * 119.99545 * 179.97438 * 14 12 2 17 17 C 1.40228 * 120.21093 * 90.28368 * 16 14 12 18 18 O 1.35663 * 120.13810 * 0.02562 * 17 16 14 19 19 C 1.38593 * 119.72641 * 180.31797 * 17 16 14 20 20 C 1.38173 * 120.15389 * 359.65072 * 19 17 16 21 21 C 1.38369 * 120.43502 * 0.04950 * 20 19 17 22 22 C 1.38168 * 120.27336 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.08512 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47395 * 300.00592 * 1 2 3 25 25 H 1.09005 * 109.46755 * 60.00301 * 1 2 3 26 26 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99878 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46809 * 269.99543 * 13 12 2 29 29 H 1.09000 * 109.47328 * 30.00041 * 13 12 2 30 30 H 1.08996 * 109.46555 * 150.00165 * 13 12 2 31 31 H 0.96700 * 114.00065 * 270.30528 * 18 17 16 32 32 H 1.08001 * 119.91974 * 179.67386 * 19 17 16 33 33 H 1.08005 * 119.78270 * 180.02562 * 20 19 17 34 34 H 1.08008 * 119.86244 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9769 1.9955 3.9069 11 1 0.8489 2.1773 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0874 1.1285 -1.8906 16 6 3.2851 -0.7306 -3.2864 17 6 2.5340 -0.7091 -4.4703 18 8 1.3504 -0.0474 -4.5142 19 6 3.0028 -1.3716 -5.5938 20 6 4.2087 -2.0446 -5.5499 21 6 4.9582 -2.0649 -4.3869 22 6 4.5075 -1.4109 -3.2564 23 9 5.2422 -1.4336 -2.1227 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9030 -0.5278 4.4376 28 1 2.4159 -2.7376 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6240 -2.2852 -2.5001 31 1 0.5877 -0.5891 -4.2692 32 1 2.4243 -1.3614 -6.5057 33 1 4.5685 -2.5585 -6.4291 34 1 5.8994 -2.5942 -4.3629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123231083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:38 Heat of formation + Delta-G solvation = -80.463686 kcal Electronic energy + Delta-G solvation = -20811.263357 eV Core-core repulsion = 17431.777111 eV Total energy + Delta-G solvation = -3379.486247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.85198 -40.24071 -38.50436 -36.70247 -35.55405 -32.85868 -31.36071 -30.05860 -29.77274 -26.37014 -25.17117 -24.14013 -22.76920 -21.34158 -19.12764 -18.54908 -17.20365 -17.02709 -16.56706 -16.36301 -15.99415 -15.42321 -15.11936 -14.70027 -14.58293 -13.99476 -13.81409 -13.18437 -12.97574 -12.49925 -12.34559 -12.26468 -12.13115 -11.92082 -11.71356 -11.67382 -11.18720 -11.01457 -10.71162 -10.16041 -9.71283 -9.41102 -9.27596 -8.93946 -8.81570 -8.64104 -7.81487 -6.14916 -4.15926 0.81392 0.92522 3.03626 3.20938 3.22402 3.36847 3.39627 3.65710 3.76969 4.30641 4.34647 4.61155 4.78466 4.87991 5.05044 5.17619 5.39306 5.55118 5.74087 5.83672 5.90265 5.97541 6.05171 6.16283 6.21949 6.27881 6.43413 6.53360 6.79958 7.05563 7.26917 7.43478 7.59589 8.07775 8.43162 8.74138 8.87391 9.45350 10.97792 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029336 B = 0.006269 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.237824 B = 4465.488708 C = 4909.102427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.577 5.577 13 C 0.088 3.912 14 C 0.559 3.441 15 O -0.533 6.533 16 C -0.172 4.172 17 C 0.164 3.836 18 O -0.485 6.485 19 C -0.160 4.160 20 C -0.067 4.067 21 C -0.166 4.166 22 C 0.148 3.852 23 F -0.121 7.121 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.266 0.734 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.395 0.605 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 -5.748 -18.355 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.307 5.307 13 C -0.056 4.056 14 C 0.344 3.656 15 O -0.410 6.410 16 C -0.177 4.177 17 C 0.118 3.882 18 O -0.296 6.296 19 C -0.178 4.178 20 C -0.086 4.086 21 C -0.185 4.185 22 C 0.128 3.872 23 F -0.099 7.099 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.253 0.747 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.163 -4.662 -18.130 18.721 hybrid contribution -0.733 0.247 0.685 1.033 sum -0.896 -4.416 -17.446 18.018 Atomic orbital electron populations 1.22459 0.98866 1.01091 0.99478 1.19348 0.90094 0.95225 0.82555 0.91896 1.21138 1.32786 1.14323 0.88387 0.90276 1.24858 0.95678 0.96548 0.95586 1.69874 1.45125 1.40147 0.97964 0.86930 0.80385 0.83891 0.77605 1.20337 1.22042 1.18769 1.47848 1.48585 1.11727 1.22542 1.21584 1.02179 0.82774 0.99052 1.17724 0.79335 0.86334 0.82194 1.90776 1.57692 1.16395 1.76165 1.20567 0.97048 1.03307 0.96792 1.18117 0.87605 0.91866 0.90575 1.84802 1.14643 1.39586 1.90523 1.21380 0.98421 0.99342 0.98704 1.20919 0.93266 0.97064 0.97306 1.21109 1.02376 1.02957 0.92043 1.17520 0.89211 0.97175 0.83271 1.91605 1.75420 1.94358 1.48559 0.92978 0.94644 0.92468 0.92404 0.92560 0.90310 0.93323 0.74729 0.84314 0.84288 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 2 C 0.23 5.64 2.23 -69.08 -0.15 5.48 16 3 H 0.06 1.74 5.95 -51.93 -0.31 1.43 16 4 C -0.53 -14.84 8.95 -34.44 -0.31 -15.15 16 5 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 8 Si 0.88 22.01 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.58 -12.24 2.75 -176.55 -0.49 -12.72 16 13 C 0.09 1.46 9.50 59.85 0.57 2.02 16 14 C 0.56 12.14 6.29 -12.53 -0.08 12.06 16 15 O -0.53 -13.88 16.43 5.27 0.09 -13.79 16 16 C -0.17 -2.92 3.92 -104.79 -0.41 -3.33 16 17 C 0.16 2.22 6.30 -38.70 -0.24 1.97 16 18 O -0.48 -6.34 12.95 -18.69 -0.24 -6.59 16 19 C -0.16 -1.59 9.97 -39.47 -0.39 -1.98 16 20 C -0.07 -0.59 10.02 -39.56 -0.40 -0.99 16 21 C -0.17 -1.84 10.00 -39.56 -0.40 -2.23 16 22 C 0.15 2.32 7.29 -38.98 -0.28 2.03 16 23 F -0.12 -2.23 16.83 2.25 0.04 -2.19 16 24 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 30 H 0.05 0.63 6.56 -51.93 -0.34 0.29 16 31 H 0.40 3.33 9.06 45.56 0.41 3.75 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -35.66 290.97 -4.26 -39.91 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -2.80 Total: 0.61 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.87 Total: -1.12 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.29 Total: -39.08 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.16 Total: -20.38 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.66 -4.26 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.550 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds