Wall clock time and date at job start Mon Mar 30 2020 00:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46692 * 2 1 4 4 C 1.50696 * 109.47017 * 119.99553 * 2 1 3 5 5 H 1.08002 * 120.00034 * 120.00363 * 4 2 1 6 6 C 1.37878 * 120.00216 * 300.00711 * 4 2 1 7 7 N 1.31517 * 120.00124 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00083 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47107 * 89.99913 * 8 6 4 10 10 H 1.48498 * 109.47489 * 210.00639 * 8 6 4 11 11 H 1.48505 * 109.46797 * 330.00446 * 8 6 4 12 12 N 1.46501 * 109.47459 * 239.99924 * 2 1 3 13 13 C 1.46502 * 119.99679 * 300.00041 * 12 2 1 14 14 C 1.34776 * 119.99888 * 119.99856 * 12 2 1 15 15 O 1.21605 * 120.00159 * 0.02562 * 14 12 2 16 16 C 1.47393 * 119.99545 * 179.97438 * 14 12 2 17 17 C 1.40228 * 120.21093 * 90.28368 * 16 14 12 18 18 O 1.35663 * 120.13810 * 0.02562 * 17 16 14 19 19 C 1.38593 * 119.72641 * 180.31797 * 17 16 14 20 20 C 1.38173 * 120.15389 * 359.65072 * 19 17 16 21 21 C 1.38369 * 120.43502 * 0.04950 * 20 19 17 22 22 C 1.38168 * 120.27336 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.08512 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47395 * 300.00592 * 1 2 3 25 25 H 1.09005 * 109.46755 * 60.00301 * 1 2 3 26 26 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99878 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46809 * 269.99543 * 13 12 2 29 29 H 1.09000 * 109.47328 * 30.00041 * 13 12 2 30 30 H 1.08996 * 109.46555 * 150.00165 * 13 12 2 31 31 H 0.96700 * 114.00065 * 270.30528 * 18 17 16 32 32 H 1.08001 * 119.91974 * 179.67386 * 19 17 16 33 33 H 1.08005 * 119.78270 * 180.02562 * 20 19 17 34 34 H 1.08008 * 119.86244 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8022 0.8744 2.6992 10 1 0.9769 1.9955 3.9069 11 1 0.8489 2.1773 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0874 1.1285 -1.8906 16 6 3.2851 -0.7306 -3.2864 17 6 2.5340 -0.7091 -4.4703 18 8 1.3504 -0.0474 -4.5142 19 6 3.0028 -1.3716 -5.5938 20 6 4.2087 -2.0446 -5.5499 21 6 4.9582 -2.0649 -4.3869 22 6 4.5075 -1.4109 -3.2564 23 9 5.2422 -1.4336 -2.1227 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9030 -0.5278 4.4376 28 1 2.4159 -2.7376 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6240 -2.2852 -2.5001 31 1 0.5877 -0.5891 -4.2692 32 1 2.4243 -1.3614 -6.5057 33 1 4.5685 -2.5585 -6.4291 34 1 5.8994 -2.5942 -4.3629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123231083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:37 Heat of formation + Delta-G solvation = -108.811337 kcal Electronic energy + Delta-G solvation = -20812.492604 eV Core-core repulsion = 17431.777111 eV Total energy + Delta-G solvation = -3380.715493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.10206 -41.51354 -39.88146 -37.63387 -37.36871 -34.86650 -32.93419 -31.41550 -30.78794 -27.87183 -27.20892 -25.42548 -23.72869 -22.91083 -20.58548 -19.72637 -19.01638 -18.27686 -18.03270 -17.79678 -17.44184 -16.80904 -16.56512 -15.98887 -15.70411 -15.63665 -14.98103 -14.81884 -14.78156 -14.15673 -13.99469 -13.69224 -13.28427 -13.27206 -13.09905 -13.03919 -12.69239 -12.62699 -12.10867 -12.02193 -11.63813 -11.43287 -10.97080 -10.83999 -10.00447 -9.74947 -9.57561 -8.39743 -6.45525 -0.15736 0.01314 1.21992 1.32706 1.41591 1.43081 2.08079 2.23767 2.37673 2.81762 2.94796 3.36327 3.40076 3.89927 3.97779 4.22117 4.25301 4.37148 4.46855 4.52689 4.60296 4.63498 4.80202 4.84530 4.99264 5.01768 5.15512 5.23080 5.26089 5.41130 5.59408 5.69125 6.12177 6.50075 6.57596 6.66303 7.04974 7.22607 8.76574 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029336 B = 0.006269 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.237824 B = 4465.488708 C = 4909.102427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.230 3.770 3 H 0.026 0.974 4 C -0.531 4.531 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.943 3.057 9 H -0.245 1.245 10 H -0.294 1.294 11 H -0.266 1.266 12 N -0.581 5.581 13 C 0.088 3.912 14 C 0.554 3.446 15 O -0.594 6.594 16 C -0.207 4.207 17 C 0.160 3.840 18 O -0.500 6.500 19 C -0.141 4.141 20 C -0.041 4.041 21 C -0.155 4.155 22 C 0.111 3.889 23 F -0.153 7.153 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.270 0.730 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.413 0.587 32 H 0.178 0.822 33 H 0.192 0.808 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -6.832 -22.063 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 H 0.044 0.956 4 C -0.569 4.569 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.769 3.231 9 H -0.170 1.170 10 H -0.221 1.221 11 H -0.191 1.191 12 N -0.310 5.310 13 C -0.054 4.054 14 C 0.342 3.658 15 O -0.476 6.476 16 C -0.212 4.212 17 C 0.114 3.886 18 O -0.314 6.314 19 C -0.159 4.159 20 C -0.059 4.059 21 C -0.173 4.173 22 C 0.091 3.909 23 F -0.132 7.132 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.274 0.726 32 H 0.195 0.805 33 H 0.209 0.791 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.609 -5.805 -21.861 22.675 hybrid contribution -0.196 0.486 1.715 1.793 sum -1.805 -5.319 -20.146 20.914 Atomic orbital electron populations 1.22290 0.95577 1.02721 1.00311 1.19051 0.92539 0.93106 0.82657 0.95629 1.21314 1.32083 1.13200 0.90336 0.94161 1.25671 0.97156 0.99568 0.95135 1.70005 1.46917 1.42120 0.98637 0.85952 0.80148 0.79853 0.77101 1.17024 1.22105 1.19085 1.47913 1.48453 1.13290 1.21378 1.21777 1.01914 0.79840 1.01902 1.18539 0.78063 0.85834 0.83404 1.90713 1.59697 1.19243 1.77938 1.20373 0.98871 1.06009 0.95943 1.18350 0.87590 0.92262 0.90356 1.84760 1.15325 1.40857 1.90464 1.21810 0.98688 0.97082 0.98286 1.21553 0.91707 0.94991 0.97634 1.21488 1.03414 1.01449 0.90950 1.18046 0.89374 0.99477 0.83966 1.91519 1.76190 1.94866 1.50605 0.93746 0.92055 0.90453 0.92096 0.94240 0.89210 0.89022 0.72616 0.80463 0.79081 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.26 8.65 71.98 0.62 -5.64 16 2 C 0.23 11.62 2.23 44.24 0.10 11.72 16 3 H 0.03 1.49 5.95 -2.39 -0.01 1.48 16 4 C -0.53 -31.22 8.95 25.60 0.23 -31.00 16 5 H 0.04 2.61 7.89 -2.91 -0.02 2.58 16 6 C 0.02 1.41 5.45 84.65 0.46 1.87 16 7 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 8 Si 0.94 46.11 24.37 68.60 1.67 47.78 16 9 H -0.25 -10.73 6.87 99.48 0.68 -10.05 16 10 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 11 H -0.27 -13.05 6.53 99.48 0.65 -12.40 16 12 N -0.58 -25.39 2.75 -830.73 -2.29 -27.68 16 13 C 0.09 2.90 9.50 127.77 1.21 4.11 16 14 C 0.55 25.01 6.29 86.65 0.55 25.56 16 15 O -0.59 -32.88 16.43 -4.05 -0.07 -32.95 16 16 C -0.21 -7.00 3.92 -19.97 -0.08 -7.08 16 17 C 0.16 3.92 6.30 22.84 0.14 4.07 16 18 O -0.50 -11.96 12.95 -89.79 -1.16 -13.12 16 19 C -0.14 -2.04 9.97 22.34 0.22 -1.82 16 20 C -0.04 -0.49 10.02 22.29 0.22 -0.26 16 21 C -0.15 -2.92 10.00 22.28 0.22 -2.69 16 22 C 0.11 3.46 7.29 22.66 0.17 3.62 16 23 F -0.15 -5.99 16.83 44.97 0.76 -5.23 16 24 H 0.04 1.90 3.27 -2.39 -0.01 1.89 16 25 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.08 2.85 6.66 -2.39 -0.02 2.84 16 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 2.72 6.43 -2.39 -0.02 2.71 16 30 H 0.09 2.21 6.56 -2.39 -0.02 2.19 16 31 H 0.41 5.84 9.06 -74.06 -0.67 5.17 16 32 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.19 0.42 8.06 -2.91 -0.02 0.39 16 34 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -85.65 290.97 3.68 -81.97 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.40 Total: 5.38 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 4.07 Total: 2.46 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -1.99 Total: -86.29 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -1.23 Total: -46.07 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.76 Total: -5.23 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.78 kcal Total: -85.65 3.68 -81.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -85.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds