Wall clock time and date at job start Mon Mar 30 2020 00:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47195 * 2 1 4 4 C 1.50701 * 109.46523 * 240.00412 * 2 1 3 5 5 H 1.08001 * 119.99942 * 275.01237 * 4 2 1 6 6 C 1.37873 * 120.00618 * 95.02091 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.89611 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89187 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46495 * 109.47258 * 120.00465 * 2 1 3 13 13 C 1.46500 * 120.00182 * 59.99665 * 12 2 1 14 14 C 1.34774 * 119.99750 * 239.99568 * 12 2 1 15 15 O 1.21603 * 120.00079 * 0.02562 * 14 12 2 16 16 C 1.47398 * 119.99802 * 179.97438 * 14 12 2 17 17 C 1.40227 * 120.20467 * 89.72692 * 16 14 12 18 18 O 1.35649 * 120.14186 * 0.02562 * 17 16 14 19 19 C 1.38597 * 119.72321 * 179.74080 * 17 16 14 20 20 C 1.38183 * 120.15139 * 0.51171 * 19 17 16 21 21 C 1.38367 * 120.43859 * 359.76599 * 20 19 17 22 22 C 1.38175 * 120.26988 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.08346 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47473 * 54.83669 * 1 2 3 25 25 H 1.08999 * 109.47113 * 294.83771 * 1 2 3 26 26 H 1.09005 * 109.47519 * 174.83977 * 1 2 3 27 27 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47446 * 90.00020 * 13 12 2 29 29 H 1.08994 * 109.47244 * 210.00301 * 13 12 2 30 30 H 1.09004 * 109.46854 * 329.99904 * 13 12 2 31 31 H 0.96703 * 114.00836 * 89.99224 * 18 17 16 32 32 H 1.07995 * 119.92207 * 180.25532 * 19 17 16 33 33 H 1.08007 * 119.78008 * 179.73956 * 20 19 17 34 34 H 1.08003 * 119.86553 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1351 -1.7854 -1.2293 6 6 2.3605 0.0121 -2.3580 7 7 2.7064 -0.6130 -3.4621 8 14 2.3138 1.8792 -2.3173 9 1 3.5989 2.3949 -1.7809 10 1 2.1072 2.3993 -3.6928 11 1 1.1982 2.3275 -1.4457 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0867 1.1286 1.8910 16 6 3.2842 -0.7305 3.2869 17 6 4.5059 -1.4181 3.2556 18 8 5.2424 -1.4468 2.1169 19 6 4.9605 -2.0634 4.3948 20 6 4.2083 -2.0384 5.5537 21 6 2.9991 -1.3668 5.5901 22 6 2.5314 -0.7129 4.4663 23 9 1.3500 -0.0587 4.5059 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3633 0.4317 0.9326 26 1 -0.3634 -1.0235 -0.0924 27 1 2.9377 -0.1046 -4.2552 28 1 2.4156 -2.7378 0.9715 29 1 1.6238 -2.2853 2.5000 30 1 0.6903 -2.3002 0.9845 31 1 5.8760 -0.7203 2.0397 32 1 5.9030 -2.5905 4.3755 33 1 4.5663 -2.5469 6.4368 34 1 2.4185 -1.3535 6.5007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123231287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:41 Heat of formation + Delta-G solvation = -89.458019 kcal Electronic energy + Delta-G solvation = -20848.790410 eV Core-core repulsion = 17468.914140 eV Total energy + Delta-G solvation = -3379.876270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.94517 -40.13799 -38.42877 -36.58177 -35.42303 -32.74570 -31.34689 -29.98621 -29.65804 -26.25509 -25.25026 -24.03992 -22.72369 -21.13334 -18.98098 -18.45011 -17.42957 -16.91767 -16.60300 -16.26031 -16.01731 -15.43681 -15.00885 -14.61929 -14.37448 -13.94459 -13.70343 -13.15147 -12.61518 -12.41572 -12.40516 -12.26715 -12.08749 -11.76225 -11.72031 -11.38265 -11.05048 -10.88046 -10.66677 -10.45063 -9.80100 -9.37605 -9.23986 -8.88208 -8.79402 -8.59145 -7.69995 -6.15232 -4.16930 0.85114 0.95087 3.08593 3.23030 3.32422 3.39001 3.46372 3.73083 3.92086 4.32981 4.39648 4.64745 4.80379 4.92578 5.07158 5.24760 5.47934 5.68135 5.77098 5.86100 5.99787 6.05120 6.10850 6.26578 6.37654 6.42130 6.55449 6.59175 6.92421 7.06382 7.43513 7.61097 7.62862 8.09415 8.48131 8.80173 8.88343 9.46994 10.96723 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.006644 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.376875 B = 4213.431047 C = 4547.414362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.521 4.521 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.570 5.570 13 C 0.089 3.911 14 C 0.557 3.443 15 O -0.549 6.549 16 C -0.172 4.172 17 C 0.172 3.828 18 O -0.482 6.482 19 C -0.159 4.159 20 C -0.068 4.068 21 C -0.168 4.168 22 C 0.141 3.859 23 F -0.128 7.128 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.266 0.734 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -3.885 17.630 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.559 4.559 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.700 3.300 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.299 5.299 13 C -0.055 4.055 14 C 0.342 3.658 15 O -0.428 6.428 16 C -0.177 4.177 17 C 0.125 3.875 18 O -0.293 6.293 19 C -0.178 4.178 20 C -0.086 4.086 21 C -0.187 4.187 22 C 0.121 3.879 23 F -0.106 7.106 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.060 -3.735 17.141 17.664 hybrid contribution 0.112 1.328 -0.065 1.334 sum 2.173 -2.407 17.076 17.381 Atomic orbital electron populations 1.22226 0.98123 1.01000 0.99309 1.19394 0.90947 0.94890 0.82595 0.91777 1.21092 1.44534 0.95774 0.94545 0.90302 1.24942 0.93784 0.98410 0.95218 1.69885 1.45159 1.36013 1.01684 0.86920 0.79918 0.86207 0.76974 1.19643 1.21313 1.18832 1.48288 1.47638 1.11725 1.22283 1.21564 1.01665 0.82941 0.99337 1.17763 0.79436 0.86170 0.82409 1.90755 1.58836 1.16455 1.76779 1.20652 0.98221 1.03424 0.95425 1.18199 0.89657 0.93585 0.86014 1.84785 1.54545 1.52679 1.37281 1.21443 1.01848 1.02738 0.91771 1.20912 0.92993 0.96826 0.97914 1.21052 0.98623 1.01239 0.97788 1.17483 0.82247 0.94615 0.93543 1.91548 1.43617 1.78584 1.96865 0.92388 0.95344 0.92996 0.92393 0.92344 0.93294 0.90785 0.74135 0.84255 0.84349 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.04 37.16 0.34 -2.90 16 2 C 0.22 5.57 2.30 -69.08 -0.16 5.41 16 3 H 0.06 1.76 4.05 -51.93 -0.21 1.55 16 4 C -0.52 -14.67 8.82 -34.44 -0.30 -14.97 16 5 H 0.08 2.36 7.67 -52.49 -0.40 1.96 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 8 Si 0.87 22.48 26.99 -169.99 -4.59 17.89 16 9 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.59 6.82 56.52 0.39 -6.20 16 12 N -0.57 -12.78 2.75 -176.55 -0.49 -13.26 16 13 C 0.09 1.64 9.36 59.85 0.56 2.20 16 14 C 0.56 12.33 6.29 -12.53 -0.08 12.25 16 15 O -0.55 -14.04 16.43 5.27 0.09 -13.96 16 16 C -0.17 -2.99 3.93 -104.79 -0.41 -3.40 16 17 C 0.17 2.53 6.72 -38.70 -0.26 2.27 16 18 O -0.48 -7.48 12.95 -18.65 -0.24 -7.72 16 19 C -0.16 -1.72 9.97 -39.47 -0.39 -2.11 16 20 C -0.07 -0.62 10.02 -39.55 -0.40 -1.02 16 21 C -0.17 -1.82 10.01 -39.56 -0.40 -2.21 16 22 C 0.14 2.12 6.85 -38.97 -0.27 1.85 16 23 F -0.13 -2.11 16.83 2.25 0.04 -2.07 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.05 6.88 -51.93 -0.36 0.70 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.78 6.54 -51.93 -0.34 0.44 16 30 H 0.07 1.30 6.53 -51.93 -0.34 0.96 16 31 H 0.40 4.68 9.06 45.56 0.41 5.10 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -34.82 297.38 -4.73 -39.54 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -2.92 Total: 1.73 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.87 Total: -0.40 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.29 Total: -39.49 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.15 Total: -21.68 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.59 Total: 17.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.82 -4.73 -39.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.915 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds