Wall clock time and date at job start Mon Mar 30 2020 00:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47195 * 2 1 4 4 C 1.50701 * 109.46523 * 240.00412 * 2 1 3 5 5 H 1.08001 * 119.99942 * 275.01237 * 4 2 1 6 6 C 1.37873 * 120.00618 * 95.02091 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.89611 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89187 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46495 * 109.47258 * 120.00465 * 2 1 3 13 13 C 1.46500 * 120.00182 * 59.99665 * 12 2 1 14 14 C 1.34774 * 119.99750 * 239.99568 * 12 2 1 15 15 O 1.21603 * 120.00079 * 0.02562 * 14 12 2 16 16 C 1.47398 * 119.99802 * 179.97438 * 14 12 2 17 17 C 1.40227 * 120.20467 * 89.72692 * 16 14 12 18 18 O 1.35649 * 120.14186 * 0.02562 * 17 16 14 19 19 C 1.38597 * 119.72321 * 179.74080 * 17 16 14 20 20 C 1.38183 * 120.15139 * 0.51171 * 19 17 16 21 21 C 1.38367 * 120.43859 * 359.76599 * 20 19 17 22 22 C 1.38175 * 120.26988 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.08346 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47473 * 54.83669 * 1 2 3 25 25 H 1.08999 * 109.47113 * 294.83771 * 1 2 3 26 26 H 1.09005 * 109.47519 * 174.83977 * 1 2 3 27 27 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47446 * 90.00020 * 13 12 2 29 29 H 1.08994 * 109.47244 * 210.00301 * 13 12 2 30 30 H 1.09004 * 109.46854 * 329.99904 * 13 12 2 31 31 H 0.96703 * 114.00836 * 89.99224 * 18 17 16 32 32 H 1.07995 * 119.92207 * 180.25532 * 19 17 16 33 33 H 1.08007 * 119.78008 * 179.73956 * 20 19 17 34 34 H 1.08003 * 119.86553 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1351 -1.7854 -1.2293 6 6 2.3605 0.0121 -2.3580 7 7 2.7064 -0.6130 -3.4621 8 14 2.3138 1.8792 -2.3173 9 1 3.5989 2.3949 -1.7809 10 1 2.1072 2.3993 -3.6928 11 1 1.1982 2.3275 -1.4457 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0867 1.1286 1.8910 16 6 3.2842 -0.7305 3.2869 17 6 4.5059 -1.4181 3.2556 18 8 5.2424 -1.4468 2.1169 19 6 4.9605 -2.0634 4.3948 20 6 4.2083 -2.0384 5.5537 21 6 2.9991 -1.3668 5.5901 22 6 2.5314 -0.7129 4.4663 23 9 1.3500 -0.0587 4.5059 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3633 0.4317 0.9326 26 1 -0.3634 -1.0235 -0.0924 27 1 2.9377 -0.1046 -4.2552 28 1 2.4156 -2.7378 0.9715 29 1 1.6238 -2.2853 2.5000 30 1 0.6903 -2.3002 0.9845 31 1 5.8760 -0.7203 2.0397 32 1 5.9030 -2.5905 4.3755 33 1 4.5663 -2.5469 6.4368 34 1 2.4185 -1.3535 6.5007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123231287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:40 Heat of formation + Delta-G solvation = -115.588167 kcal Electronic energy + Delta-G solvation = -20849.923499 eV Core-core repulsion = 17468.914140 eV Total energy + Delta-G solvation = -3381.009358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.08939 -41.46308 -39.86585 -37.62084 -37.27554 -34.79921 -32.90956 -31.33793 -30.77080 -27.87030 -27.31381 -25.32019 -23.71835 -22.73540 -20.52550 -19.66159 -19.33771 -18.26159 -18.05504 -17.66073 -17.41559 -16.74145 -16.40645 -15.94057 -15.79397 -15.53512 -14.87822 -14.82826 -14.55498 -14.32150 -13.99871 -13.49290 -13.27360 -13.15206 -13.08437 -12.99305 -12.72070 -12.62447 -12.39357 -12.00905 -11.87359 -11.36192 -10.97166 -10.83439 -9.98944 -9.74415 -9.51484 -8.40684 -6.44854 -0.15591 0.01479 1.23271 1.29057 1.38215 1.45432 2.10689 2.24000 2.38781 2.85525 2.99068 3.34010 3.43588 3.89593 3.98436 4.21653 4.25277 4.36139 4.49649 4.59267 4.67159 4.67864 4.80037 4.84206 5.00836 5.02669 5.17342 5.23459 5.27865 5.46206 5.67231 5.69362 6.08586 6.54854 6.59993 6.61109 7.07584 7.23382 8.74862 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.006644 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.376875 B = 4213.431047 C = 4547.414362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.220 3.780 3 H 0.040 0.960 4 C -0.518 4.518 5 H 0.051 0.949 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.924 3.076 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.253 1.253 12 N -0.581 5.581 13 C 0.092 3.908 14 C 0.552 3.448 15 O -0.598 6.598 16 C -0.208 4.208 17 C 0.153 3.847 18 O -0.506 6.506 19 C -0.145 4.145 20 C -0.042 4.042 21 C -0.151 4.151 22 C 0.119 3.881 23 F -0.145 7.145 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.270 0.730 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.170 0.830 33 H 0.192 0.808 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -4.917 20.950 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.118 3.882 3 H 0.058 0.942 4 C -0.557 4.557 5 H 0.070 0.930 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.749 3.251 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.178 1.178 12 N -0.309 5.309 13 C -0.050 4.050 14 C 0.340 3.660 15 O -0.481 6.481 16 C -0.212 4.212 17 C 0.107 3.893 18 O -0.319 6.319 19 C -0.163 4.163 20 C -0.060 4.060 21 C -0.170 4.170 22 C 0.099 3.901 23 F -0.123 7.123 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.270 0.730 32 H 0.188 0.812 33 H 0.209 0.791 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.204 -4.792 20.479 21.147 hybrid contribution 0.142 1.535 -0.962 1.817 sum 2.345 -3.257 19.517 19.925 Atomic orbital electron populations 1.22093 0.95537 1.02096 1.00140 1.19225 0.92872 0.93431 0.82644 0.94217 1.21247 1.43930 0.94651 0.95868 0.93046 1.25587 0.93932 1.02185 0.95040 1.69976 1.46975 1.37553 1.02421 0.86100 0.79505 0.81759 0.77689 1.20985 1.19641 1.17754 1.48260 1.47920 1.13090 1.21640 1.21657 1.01490 0.80631 1.01239 1.18529 0.78164 0.85784 0.83538 1.90696 1.60331 1.18761 1.78266 1.20417 1.00366 1.06266 0.94177 1.18525 0.89011 0.94657 0.87074 1.84744 1.55043 1.53395 1.38701 1.21796 1.02916 1.01045 0.90541 1.21546 0.91215 0.94506 0.98705 1.21499 0.99152 0.99146 0.97163 1.17842 0.82029 0.96033 0.94181 1.91501 1.44631 1.79252 1.96959 0.92549 0.93652 0.91601 0.92088 0.93475 0.90398 0.90005 0.73034 0.81218 0.79114 0.80735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.09 9.04 71.98 0.65 -5.44 16 2 C 0.22 11.26 2.30 44.25 0.10 11.36 16 3 H 0.04 2.23 4.05 -2.39 -0.01 2.22 16 4 C -0.52 -30.07 8.82 25.60 0.23 -29.85 16 5 H 0.05 3.20 7.67 -2.91 -0.02 3.18 16 6 C 0.03 1.94 5.47 84.65 0.46 2.40 16 7 N -0.93 -57.92 13.96 21.44 0.30 -57.62 16 8 Si 0.92 47.47 26.99 68.60 1.85 49.32 16 9 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 10 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.25 -12.47 6.82 99.48 0.68 -11.79 16 12 N -0.58 -26.53 2.75 -830.75 -2.29 -28.81 16 13 C 0.09 3.42 9.36 127.77 1.20 4.62 16 14 C 0.55 25.07 6.29 86.66 0.55 25.62 16 15 O -0.60 -31.90 16.43 -4.04 -0.07 -31.97 16 16 C -0.21 -7.10 3.93 -19.97 -0.08 -7.18 16 17 C 0.15 4.32 6.72 22.84 0.15 4.47 16 18 O -0.51 -15.86 12.95 -89.64 -1.16 -17.02 16 19 C -0.14 -2.50 9.97 22.34 0.22 -2.28 16 20 C -0.04 -0.51 10.02 22.29 0.22 -0.29 16 21 C -0.15 -2.56 10.01 22.29 0.22 -2.34 16 22 C 0.12 3.36 6.85 22.66 0.16 3.51 16 23 F -0.14 -4.67 16.83 44.97 0.76 -3.91 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 2.63 6.88 -2.38 -0.02 2.61 16 27 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 2.41 6.54 -2.39 -0.02 2.40 16 30 H 0.08 2.84 6.53 -2.39 -0.02 2.83 16 31 H 0.41 10.01 9.06 -74.06 -0.67 9.34 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.19 0.50 8.06 -2.91 -0.02 0.47 16 34 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -80.17 297.38 3.92 -76.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.44 Total: 9.17 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.08 Total: 4.60 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.99 Total: -86.43 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.23 Total: -48.99 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.76 Total: -3.91 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.85 Total: 49.32 kcal Total: -80.17 3.92 -76.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.340 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds