Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47261 * 2 1 4 4 C 1.36882 * 120.00169 * 274.83951 * 3 2 1 5 5 H 1.07997 * 119.99892 * 134.05983 * 4 3 2 6 6 C 1.39006 * 119.99495 * 314.05865 * 4 3 2 7 7 N 1.31395 * 120.00397 * 3.32754 * 6 4 3 8 8 Si 1.86801 * 119.99800 * 183.33094 * 6 4 3 9 9 H 1.48508 * 109.47104 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47396 * 119.99769 * 8 6 4 11 11 H 1.48497 * 109.47156 * 240.00398 * 8 6 4 12 12 C 1.34783 * 119.99820 * 94.83163 * 3 2 1 13 13 O 1.21742 * 119.99744 * 184.36387 * 12 3 2 14 14 C 1.46451 * 119.99886 * 4.36925 * 12 3 2 15 15 S 1.75831 * 125.46239 * 274.45093 * 14 12 3 16 16 C 1.70616 * 91.57012 * 180.02562 * 15 14 12 17 17 C 1.33856 * 110.96575 * 359.97438 * 16 15 14 18 18 C 1.36771 * 125.46601 * 94.45571 * 14 12 3 19 19 C 1.50700 * 123.35848 * 0.02562 * 18 14 12 20 20 C 1.53002 * 109.47093 * 115.21167 * 19 18 14 21 21 C 1.53006 * 109.47465 * 235.21426 * 19 18 14 22 22 H 1.09008 * 109.47374 * 59.99821 * 1 2 3 23 23 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47425 * 300.00025 * 1 2 3 25 25 H 1.08996 * 109.47077 * 240.00119 * 2 1 3 26 26 H 1.09005 * 109.46949 * 119.99894 * 2 1 3 27 27 H 0.96998 * 119.99711 * 179.97438 * 7 6 4 28 28 H 1.07997 * 124.51846 * 179.97438 * 16 15 14 29 29 H 1.08002 * 122.44014 * 180.02562 * 17 16 15 30 30 H 1.08997 * 109.47031 * 355.21139 * 19 18 14 31 31 H 1.08993 * 109.47084 * 300.00312 * 20 19 18 32 32 H 1.09001 * 109.46756 * 60.00168 * 20 19 18 33 33 H 1.08998 * 109.47169 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.46977 * 59.99981 * 21 19 18 35 35 H 1.08998 * 109.47402 * 180.02562 * 21 19 18 36 36 H 1.08997 * 109.46360 * 300.00238 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1522 2.0599 -1.1812 5 1 1.7872 3.0728 -1.2664 6 6 2.7580 1.4453 -2.2710 7 7 3.1430 0.1918 -2.1881 8 14 3.0247 2.4016 -3.8533 9 1 2.5057 3.7834 -3.6901 10 1 4.4761 2.4509 -4.1633 11 1 2.3036 1.7307 -4.9647 12 6 2.3357 1.9838 1.1631 13 8 2.6654 3.1557 1.1714 14 6 2.2840 1.2287 2.4169 15 16 0.8509 0.9949 3.4085 16 6 1.7291 0.0713 4.5428 17 6 3.0123 -0.0407 4.1785 18 6 3.3426 0.5925 3.0043 19 6 4.7328 0.5871 2.4226 20 6 5.6825 1.3304 3.3641 21 6 5.2093 -0.8570 2.2532 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.5653 -0.2371 -2.9487 28 1 1.3062 -0.3649 5.4357 29 1 3.7352 -0.5887 4.7647 30 1 4.7222 1.0824 1.4517 31 1 5.3431 2.3591 3.4847 32 1 5.6930 0.8351 4.3350 33 1 6.6879 1.3269 2.9431 34 1 4.5327 -1.3865 1.5825 35 1 6.2149 -0.8609 1.8329 36 1 5.2197 -1.3522 3.2241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127967287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = -12.261773 kcal Electronic energy + Delta-G solvation = -19033.499671 eV Core-core repulsion = 16223.184057 eV Total energy + Delta-G solvation = -2810.315614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.09999 -37.52292 -34.91259 -33.65115 -31.99800 -29.41930 -29.15423 -26.75291 -25.35042 -23.81744 -22.14435 -21.40088 -20.24533 -17.57204 -17.04036 -16.51702 -15.84595 -15.32535 -14.53468 -13.93752 -13.78709 -13.55297 -13.22652 -13.14009 -12.77394 -12.57180 -12.19351 -12.11323 -11.81610 -11.65240 -11.43991 -11.10551 -11.05164 -10.84188 -10.71855 -10.51773 -10.30559 -10.26919 -10.19123 -9.92814 -8.98376 -8.69882 -8.08883 -7.96518 -7.44030 -6.26165 -4.12306 1.32181 1.92744 2.42389 3.05002 3.17091 3.25442 3.31949 3.94749 4.18786 4.86750 5.05040 5.18292 5.35394 5.46600 5.62705 5.71875 5.89573 5.95915 5.99691 6.07958 6.10605 6.14998 6.35703 6.37854 6.41054 6.52282 6.55894 6.64554 6.69606 6.86916 6.99409 7.03821 7.36595 7.66786 8.30100 8.51672 9.12060 9.32624 9.95432 10.68663 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.007850 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.994151 B = 3566.001267 C = 4116.795928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.082 3.918 3 N -0.423 5.423 4 C -0.302 4.302 5 H 0.088 0.912 6 C 0.042 3.958 7 N -0.874 5.874 8 Si 0.924 3.076 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.281 1.281 12 C 0.527 3.473 13 O -0.569 6.569 14 C -0.192 4.192 15 S 0.173 5.827 16 C -0.269 4.269 17 C -0.124 4.124 18 C -0.074 4.074 19 C -0.037 4.037 20 C -0.137 4.137 21 C -0.136 4.136 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.131 0.869 26 H 0.045 0.955 27 H 0.269 0.731 28 H 0.158 0.842 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -5.040 8.886 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.042 4.042 3 N -0.142 5.142 4 C -0.431 4.431 5 H 0.106 0.894 6 C -0.162 4.162 7 N -0.513 5.513 8 Si 0.750 3.250 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.207 1.207 12 C 0.312 3.688 13 O -0.452 6.452 14 C -0.313 4.313 15 S 0.441 5.559 16 C -0.406 4.406 17 C -0.156 4.156 18 C -0.086 4.086 19 C -0.058 4.058 20 C -0.194 4.194 21 C -0.194 4.194 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.148 0.852 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.175 0.825 29 H 0.151 0.849 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.042 -4.155 8.662 9.822 hybrid contribution 1.524 -0.318 -0.421 1.613 sum -0.517 -4.474 8.241 9.391 Atomic orbital electron populations 1.22145 0.98234 1.00144 1.01179 1.21986 0.92063 0.85456 1.04700 1.43353 1.54402 1.12166 1.04274 1.19419 1.37010 0.99360 0.87269 0.89389 1.25563 0.94670 0.95823 1.00116 1.69508 1.39293 1.10665 1.31790 0.85905 0.78275 0.80032 0.80753 1.19126 1.20506 1.20711 1.17292 0.81808 0.87109 0.82542 1.90678 1.52010 1.16097 1.86455 1.24976 0.96837 1.07105 1.02372 1.83006 1.11780 1.47360 1.13764 1.24955 0.99285 1.09848 1.06523 1.19674 0.95821 1.02821 0.97313 1.19199 0.95579 0.98614 0.95214 1.19789 0.89511 0.96857 0.99636 1.21770 0.98480 1.00537 0.98658 1.21765 1.00944 0.95514 1.01151 0.92426 0.93260 0.94304 0.85157 0.93638 0.92047 0.82473 0.84908 0.89617 0.92480 0.93065 0.92653 0.92181 0.92681 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.21 37.15 0.38 -2.71 16 2 C 0.08 1.85 5.73 -4.04 -0.02 1.82 16 3 N -0.42 -10.89 2.52 -116.37 -0.29 -11.18 16 4 C -0.30 -8.30 8.80 -15.01 -0.13 -8.43 16 5 H 0.09 2.52 7.80 -52.49 -0.41 2.11 16 6 C 0.04 1.10 5.40 -17.45 -0.09 1.00 16 7 N -0.87 -22.79 10.74 55.50 0.60 -22.20 16 8 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.53 13.48 6.35 -12.95 -0.08 13.40 16 13 O -0.57 -16.55 17.06 5.15 0.09 -16.46 16 14 C -0.19 -4.05 4.22 -36.81 -0.16 -4.20 16 15 S 0.17 2.94 22.35 -107.50 -2.40 0.53 16 16 C -0.27 -3.93 10.92 29.19 0.32 -3.61 16 17 C -0.12 -1.93 9.16 -41.41 -0.38 -2.31 16 18 C -0.07 -1.37 4.68 -105.45 -0.49 -1.87 16 19 C -0.04 -0.68 3.13 -91.77 -0.29 -0.96 16 20 C -0.14 -2.12 9.08 37.16 0.34 -1.78 16 21 C -0.14 -2.11 8.99 37.16 0.33 -1.78 16 22 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.72 7.40 -51.93 -0.38 0.34 16 25 H 0.13 3.22 5.15 -51.93 -0.27 2.95 16 26 H 0.05 0.98 6.59 -51.93 -0.34 0.64 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.13 1.72 7.70 -52.49 -0.40 1.32 16 30 H 0.09 1.91 7.13 -51.93 -0.37 1.54 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.68 7.99 -51.93 -0.41 0.27 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.66 7.53 -51.93 -0.39 0.27 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -29.82 312.74 -7.68 -37.50 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.08 Total: 2.95 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.28 Total: -11.44 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.30 Total: -33.38 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.46 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.40 Total: 0.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.82 -7.68 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127967287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.240 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds