Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47261 * 2 1 4 4 C 1.36882 * 120.00169 * 274.83951 * 3 2 1 5 5 H 1.07997 * 119.99892 * 134.05983 * 4 3 2 6 6 C 1.39006 * 119.99495 * 314.05865 * 4 3 2 7 7 N 1.31395 * 120.00397 * 3.32754 * 6 4 3 8 8 Si 1.86801 * 119.99800 * 183.33094 * 6 4 3 9 9 H 1.48508 * 109.47104 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47396 * 119.99769 * 8 6 4 11 11 H 1.48497 * 109.47156 * 240.00398 * 8 6 4 12 12 C 1.34783 * 119.99820 * 94.83163 * 3 2 1 13 13 O 1.21742 * 119.99744 * 184.36387 * 12 3 2 14 14 C 1.46451 * 119.99886 * 4.36925 * 12 3 2 15 15 S 1.75831 * 125.46239 * 274.45093 * 14 12 3 16 16 C 1.70616 * 91.57012 * 180.02562 * 15 14 12 17 17 C 1.33856 * 110.96575 * 359.97438 * 16 15 14 18 18 C 1.36771 * 125.46601 * 94.45571 * 14 12 3 19 19 C 1.50700 * 123.35848 * 0.02562 * 18 14 12 20 20 C 1.53002 * 109.47093 * 115.21167 * 19 18 14 21 21 C 1.53006 * 109.47465 * 235.21426 * 19 18 14 22 22 H 1.09008 * 109.47374 * 59.99821 * 1 2 3 23 23 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47425 * 300.00025 * 1 2 3 25 25 H 1.08996 * 109.47077 * 240.00119 * 2 1 3 26 26 H 1.09005 * 109.46949 * 119.99894 * 2 1 3 27 27 H 0.96998 * 119.99711 * 179.97438 * 7 6 4 28 28 H 1.07997 * 124.51846 * 179.97438 * 16 15 14 29 29 H 1.08002 * 122.44014 * 180.02562 * 17 16 15 30 30 H 1.08997 * 109.47031 * 355.21139 * 19 18 14 31 31 H 1.08993 * 109.47084 * 300.00312 * 20 19 18 32 32 H 1.09001 * 109.46756 * 60.00168 * 20 19 18 33 33 H 1.08998 * 109.47169 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.46977 * 59.99981 * 21 19 18 35 35 H 1.08998 * 109.47402 * 180.02562 * 21 19 18 36 36 H 1.08997 * 109.46360 * 300.00238 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1522 2.0599 -1.1812 5 1 1.7872 3.0728 -1.2664 6 6 2.7580 1.4453 -2.2710 7 7 3.1430 0.1918 -2.1881 8 14 3.0247 2.4016 -3.8533 9 1 2.5057 3.7834 -3.6901 10 1 4.4761 2.4509 -4.1633 11 1 2.3036 1.7307 -4.9647 12 6 2.3357 1.9838 1.1631 13 8 2.6654 3.1557 1.1714 14 6 2.2840 1.2287 2.4169 15 16 0.8509 0.9949 3.4085 16 6 1.7291 0.0713 4.5428 17 6 3.0123 -0.0407 4.1785 18 6 3.3426 0.5925 3.0043 19 6 4.7328 0.5871 2.4226 20 6 5.6825 1.3304 3.3641 21 6 5.2093 -0.8570 2.2532 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.5653 -0.2371 -2.9487 28 1 1.3062 -0.3649 5.4357 29 1 3.7352 -0.5887 4.7647 30 1 4.7222 1.0824 1.4517 31 1 5.3431 2.3591 3.4847 32 1 5.6930 0.8351 4.3350 33 1 6.6879 1.3269 2.9431 34 1 4.5327 -1.3865 1.5825 35 1 6.2149 -0.8609 1.8329 36 1 5.2197 -1.3522 3.2241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127967287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = -29.189356 kcal Electronic energy + Delta-G solvation = -19034.233706 eV Core-core repulsion = 16223.184057 eV Total energy + Delta-G solvation = -2811.049649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79893 -39.11888 -36.91040 -34.95879 -33.98634 -31.21999 -30.65763 -27.99674 -27.18972 -25.35670 -23.89724 -22.70859 -21.95064 -19.30915 -18.63350 -18.26427 -17.43955 -17.15424 -16.29357 -15.61684 -15.45979 -15.06030 -14.63731 -14.50782 -14.37750 -14.23610 -13.76925 -13.62628 -13.33057 -13.09553 -12.93734 -12.90667 -12.62980 -12.46443 -12.28336 -12.08931 -12.04855 -11.75911 -11.69062 -11.52209 -10.96733 -10.68100 -9.51827 -9.43714 -9.29516 -8.26454 -6.22487 -0.03920 0.50237 1.13889 1.36506 1.38901 1.51853 1.75202 2.07901 2.29727 2.96033 3.13532 3.88734 3.94370 4.12336 4.29969 4.35189 4.38189 4.56920 4.66104 4.68174 4.79668 4.81158 4.83837 4.94475 5.00939 5.09747 5.20641 5.25977 5.31109 5.37189 5.40999 5.55621 5.63226 5.69438 6.24701 6.53674 7.09810 7.35623 7.97726 8.66527 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.007850 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.994151 B = 3566.001267 C = 4116.795928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.086 3.914 3 N -0.433 5.433 4 C -0.339 4.339 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.886 5.886 8 Si 0.985 3.015 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.262 1.262 12 C 0.523 3.477 13 O -0.626 6.626 14 C -0.256 4.256 15 S 0.189 5.811 16 C -0.234 4.234 17 C -0.135 4.135 18 C -0.061 4.061 19 C -0.043 4.043 20 C -0.129 4.129 21 C -0.127 4.127 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.275 0.725 28 H 0.204 0.796 29 H 0.171 0.829 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -7.357 11.012 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 N -0.151 5.151 4 C -0.468 4.468 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.524 5.524 8 Si 0.808 3.192 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.186 1.186 12 C 0.311 3.689 13 O -0.513 6.513 14 C -0.376 4.376 15 S 0.456 5.544 16 C -0.371 4.371 17 C -0.165 4.165 18 C -0.075 4.075 19 C -0.064 4.064 20 C -0.187 4.187 21 C -0.184 4.184 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.221 0.779 29 H 0.189 0.811 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.027 -6.518 10.775 12.755 hybrid contribution 1.521 0.360 -0.990 1.850 sum -0.507 -6.158 9.785 11.573 Atomic orbital electron populations 1.22051 0.95819 1.02165 1.00712 1.21952 0.94004 0.83754 1.03935 1.43560 1.54467 1.13003 1.04051 1.19353 1.39338 0.98957 0.89150 0.92139 1.26241 0.93793 0.96672 1.02552 1.69607 1.38786 1.11224 1.32781 0.85021 0.78298 0.78414 0.77483 1.19952 1.20046 1.18621 1.17844 0.80308 0.86672 0.84115 1.90598 1.54304 1.18721 1.87725 1.24519 1.00195 1.10603 1.02329 1.82857 1.10048 1.47863 1.13589 1.25500 0.98450 1.06839 1.06294 1.19887 0.97133 1.03195 0.96325 1.19552 0.94880 0.97275 0.95841 1.19817 0.90733 0.98407 0.97446 1.21722 0.98177 0.99090 0.99697 1.21702 1.00657 0.93408 1.02675 0.94008 0.89864 0.93641 0.87159 0.92841 0.91427 0.77911 0.81141 0.95509 0.94816 0.89666 0.91410 0.94282 0.91819 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 10.21 71.98 0.74 -5.08 16 2 C 0.09 4.02 5.73 86.38 0.49 4.52 16 3 N -0.43 -23.54 2.52 -640.28 -1.62 -25.16 16 4 C -0.34 -19.85 8.80 84.09 0.74 -19.11 16 5 H 0.06 3.77 7.80 -2.91 -0.02 3.74 16 6 C 0.01 0.54 5.40 84.94 0.46 1.00 16 7 N -0.89 -47.42 10.74 21.67 0.23 -47.19 16 8 Si 0.98 43.43 29.55 68.60 2.03 45.46 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 C 0.52 28.38 6.35 86.38 0.55 28.93 16 13 O -0.63 -39.29 17.06 -4.48 -0.08 -39.36 16 14 C -0.26 -10.97 4.22 24.07 0.10 -10.87 16 15 S 0.19 6.07 22.35 -56.49 -1.26 4.81 16 16 C -0.23 -5.72 10.92 66.82 0.73 -4.99 16 17 C -0.13 -3.61 9.16 21.08 0.19 -3.42 16 18 C -0.06 -2.24 4.68 -20.40 -0.10 -2.33 16 19 C -0.04 -1.57 3.13 -11.54 -0.04 -1.60 16 20 C -0.13 -3.85 9.08 71.98 0.65 -3.20 16 21 C -0.13 -3.73 8.99 71.98 0.65 -3.08 16 22 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.04 1.68 7.40 -2.39 -0.02 1.67 16 25 H 0.11 5.61 5.15 -2.39 -0.01 5.60 16 26 H 0.05 2.35 6.59 -2.38 -0.02 2.33 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.20 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.17 3.32 7.70 -2.91 -0.02 3.30 16 30 H 0.03 1.26 7.13 -2.39 -0.02 1.25 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.90 7.53 -2.39 -0.02 1.88 16 Total: -1.00 -71.09 312.74 5.54 -65.55 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.07 Total: 15.14 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 5.17 Total: -19.24 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.38 Total: -72.35 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.08 Total: -39.36 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.26 Total: 4.81 kcal Total: -71.09 5.54 -65.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127967287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.356 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds