Wall clock time and date at job start Mon Mar 30 2020 00:54:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35969 * 117.00127 * 2 1
4 4 C 1.38323 * 119.98897 * 0.28523 * 3 2 1
5 5 C 1.39600 * 119.82021 * 180.20759 * 4 3 2
6 6 C 1.47739 * 120.09958 * 179.78883 * 5 4 3
7 7 O 1.21561 * 119.99524 * 20.19050 * 6 5 4
8 8 N 1.34771 * 119.99710 * 200.18751 * 6 5 4
9 9 C 1.46500 * 120.00419 * 7.07864 * 8 6 5
10 10 C 1.46504 * 119.99545 * 187.07008 * 8 6 5
11 11 C 1.50694 * 109.47529 * 270.00417 * 10 8 6
12 12 H 1.08002 * 120.00150 * 0.02562 * 11 10 8
13 13 C 1.37878 * 120.00518 * 180.02562 * 11 10 8
14 14 N 1.31514 * 120.00359 * 179.97438 * 13 11 10
15 15 Si 1.86804 * 119.99472 * 359.97438 * 13 11 10
16 16 H 1.48507 * 109.46753 * 90.00311 * 15 13 11
17 17 H 1.48501 * 109.47107 * 209.99839 * 15 13 11
18 18 H 1.48492 * 109.47442 * 330.00378 * 15 13 11
19 19 C 1.39649 * 119.80260 * 359.50939 * 5 4 3
20 20 C 1.37884 * 119.98453 * 0.25730 * 19 5 4
21 21 C 1.38529 * 120.17888 * 359.97438 * 20 19 5
22 22 F 1.35099 * 119.90463 * 180.02562 * 21 20 19
23 23 H 1.09004 * 109.47126 * 299.99191 * 1 2 3
24 24 H 1.08991 * 109.47163 * 59.99556 * 1 2 3
25 25 H 1.08998 * 109.47101 * 179.97438 * 1 2 3
26 26 H 1.08002 * 120.08974 * 359.97076 * 4 3 2
27 27 H 1.09003 * 109.46760 * 267.44167 * 9 8 6
28 28 H 1.08993 * 109.47394 * 27.44186 * 9 8 6
29 29 H 1.08999 * 109.47044 * 147.44615 * 9 8 6
30 30 H 1.09004 * 109.46844 * 150.00183 * 10 8 6
31 31 H 1.08998 * 109.47052 * 30.00446 * 10 8 6
32 32 H 0.96996 * 119.99725 * 179.97438 * 14 13 11
33 33 H 1.08008 * 120.00470 * 180.27901 * 19 5 4
34 34 H 1.08000 * 119.91274 * 180.02562 * 20 19 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 1.2927 2.3714 0.0060
5 6 1.9302 3.6134 0.0016
6 6 1.1313 4.8562 0.0032
7 8 -0.0269 4.8337 0.3714
8 7 1.6869 6.0148 -0.4036
9 6 3.0284 6.0171 -0.9921
10 6 0.9490 7.2719 -0.2573
11 6 0.1302 7.5211 -1.4976
12 1 0.1564 6.8136 -2.3132
13 6 -0.6525 8.6524 -1.5914
14 7 -1.3666 8.8701 -2.6740
15 14 -0.6984 9.8757 -0.1804
16 1 0.3632 10.8958 -0.3750
17 1 -2.0250 10.5423 -0.1462
18 1 -0.4699 9.1618 1.1014
19 6 3.3252 3.6776 0.0015
20 6 4.0684 2.5162 0.0005
21 6 3.4352 1.2841 0.0000
22 9 4.1688 0.1497 -0.0005
23 1 -0.3633 0.5137 0.8901
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0276 -0.0005
26 1 0.2141 2.3164 0.0101
27 1 3.7676 6.1945 -0.2108
28 1 3.2208 5.0526 -1.4620
29 1 3.0952 6.8060 -1.7413
30 1 1.6529 8.0920 -0.1157
31 1 0.2883 7.2069 0.6072
32 1 -1.9175 9.6657 -2.7397
33 1 3.8218 4.6367 0.0027
34 1 5.1472 2.5672 0.0009
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000128459594.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:31
Heat of formation + Delta-G solvation = -61.455186 kcal
Electronic energy + Delta-G solvation = -20001.285910 eV
Core-core repulsion = 16622.623934 eV
Total energy + Delta-G solvation = -3378.661976 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.90401 -40.44215 -39.10222 -37.07713 -35.21207 -32.67441 -30.97471 -30.58125
-28.54161 -27.26639 -26.44281 -23.78314 -22.53135 -21.99050 -19.59402 -17.92368
-17.61996 -17.01235 -16.87797 -16.28073 -15.85411 -15.46624 -15.16283 -14.93984
-14.47395 -14.31619 -14.05712 -13.63310 -13.15476 -12.81403 -12.56692 -12.42638
-12.28206 -12.08116 -11.69398 -11.56104 -11.30044 -11.02969 -10.80452 -10.55830
-10.15316 -9.60902 -9.26944 -9.03594 -8.63114 -8.30475 -7.83022 -6.12117
-4.11458 0.71416 1.11978 2.96802 3.01953 3.23854 3.32171 3.35779
3.59729 3.89216 4.08229 4.36080 4.57588 4.68101 4.91615 4.98179
5.06588 5.09734 5.20549 5.33917 5.39715 5.47156 5.63106 5.74677
5.84202 5.96169 6.09821 6.19309 6.41479 6.59772 6.87786 7.09372
7.20340 7.55188 8.08161 8.41215 8.78194 8.91901 9.47240 11.01259
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.031323 B = 0.004678 C = 0.004304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.690550 B = 5983.855197 C = 6504.227546
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.311 6.311
3 C 0.085 3.915
4 C -0.127 4.127
5 C -0.090 4.090
6 C 0.547 3.453
7 O -0.529 6.529
8 N -0.588 5.588
9 C 0.068 3.932
10 C 0.216 3.784
11 C -0.530 4.530
12 H 0.075 0.925
13 C 0.073 3.927
14 N -0.896 5.896
15 Si 0.875 3.125
16 H -0.275 1.275
17 H -0.283 1.283
18 H -0.264 1.264
19 C -0.120 4.120
20 C -0.126 4.126
21 C 0.082 3.918
22 F -0.133 7.133
23 H 0.061 0.939
24 H 0.061 0.939
25 H 0.103 0.897
26 H 0.150 0.850
27 H 0.054 0.946
28 H 0.076 0.924
29 H 0.078 0.922
30 H 0.029 0.971
31 H 0.042 0.958
32 H 0.265 0.735
33 H 0.164 0.836
34 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.824 -13.264 5.642 18.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.225 6.225
3 C 0.039 3.961
4 C -0.147 4.147
5 C -0.094 4.094
6 C 0.333 3.667
7 O -0.407 6.407
8 N -0.319 5.319
9 C -0.075 4.075
10 C 0.096 3.904
11 C -0.568 4.568
12 H 0.093 0.907
13 C -0.130 4.130
14 N -0.535 5.535
15 Si 0.701 3.299
16 H -0.200 1.200
17 H -0.209 1.209
18 H -0.189 1.189
19 C -0.138 4.138
20 C -0.145 4.145
21 C 0.062 3.938
22 F -0.112 7.112
23 H 0.079 0.921
24 H 0.080 0.920
25 H 0.121 0.879
26 H 0.168 0.832
27 H 0.072 0.928
28 H 0.094 0.906
29 H 0.097 0.903
30 H 0.047 0.953
31 H 0.059 0.941
32 H 0.075 0.925
33 H 0.181 0.819
34 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 10.171 -13.339 5.747 17.731
hybrid contribution -0.228 0.644 0.483 0.836
sum 9.943 -12.696 6.230 17.287
Atomic orbital electron populations
1.23170 0.77544 1.04215 1.02233 1.86107 1.22037 1.25411 1.88927
1.18837 0.90710 0.85616 1.00928 1.21267 1.01256 0.89975 1.02175
1.20073 0.93800 0.93946 1.01551 1.18035 0.86470 0.82947 0.79213
1.90766 1.16237 1.85355 1.48314 1.47720 1.16863 1.08097 1.59188
1.22300 0.83724 1.03484 0.98029 1.19733 0.91973 0.79843 0.98867
1.21300 1.26099 1.07820 1.01600 0.90687 1.24858 0.94760 0.97696
0.95659 1.69893 1.28569 1.27665 1.27334 0.86865 0.77939 0.81615
0.83432 1.20031 1.20882 1.18862 1.22182 0.92947 0.99904 0.98775
1.20966 1.01094 0.89832 1.02602 1.17189 0.85925 0.82963 1.07765
1.91491 1.76600 1.48960 1.94105 0.92058 0.92035 0.87901 0.83248
0.92761 0.90592 0.90339 0.95274 0.94052 0.92507 0.81868 0.83567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.22 9.81 101.05 0.99 1.22 16
2 O -0.31 -4.09 10.36 -19.64 -0.20 -4.29 16
3 C 0.09 1.18 6.69 -39.24 -0.26 0.92 16
4 C -0.13 -1.90 8.57 -39.04 -0.33 -2.24 16
5 C -0.09 -1.43 5.56 -104.98 -0.58 -2.02 16
6 C 0.55 11.16 7.51 -12.38 -0.09 11.07 16
7 O -0.53 -12.95 16.18 5.31 0.09 -12.87 16
8 N -0.59 -11.79 2.86 -184.12 -0.53 -12.31 16
9 C 0.07 0.97 8.65 59.85 0.52 1.49 16
10 C 0.22 5.14 4.19 -5.19 -0.02 5.12 16
11 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16
12 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16
13 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16
14 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16
15 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16
16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
18 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16
19 C -0.12 -1.48 7.62 -39.18 -0.30 -1.78 16
20 C -0.13 -1.39 10.00 -39.60 -0.40 -1.79 16
21 C 0.08 1.07 7.31 -39.16 -0.29 0.78 16
22 F -0.13 -1.78 17.10 2.25 0.04 -1.75 16
23 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16
24 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16
25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
26 H 0.15 2.23 6.01 -52.49 -0.32 1.92 16
27 H 0.05 0.60 6.92 -51.93 -0.36 0.24 16
28 H 0.08 0.95 5.37 -51.93 -0.28 0.67 16
29 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16
30 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16
31 H 0.04 1.06 6.59 -51.93 -0.34 0.72 16
32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
33 H 0.16 1.69 4.01 -52.48 -0.21 1.48 16
34 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16
LS Contribution 292.37 15.07 4.41 4.41
Total: -1.00 -34.35 292.37 -4.85 -39.19
By element:
Atomic # 1 Polarization: 1.92 SS G_CDS: -3.55 Total: -1.63 kcal
Atomic # 6 Polarization: 0.64 SS G_CDS: -1.21 Total: -0.57 kcal
Atomic # 7 Polarization: -39.16 SS G_CDS: 0.25 Total: -38.92 kcal
Atomic # 8 Polarization: -17.04 SS G_CDS: -0.12 Total: -17.16 kcal
Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -34.35 -4.85 -39.19 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000128459594.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.262 kcal
(2) G-P(sol) polarization free energy of solvation -34.345 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.455 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds