Wall clock time and date at job start Mon Mar 30 2020 00:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35969 * 117.00127 * 2 1 4 4 C 1.38323 * 119.98897 * 0.28523 * 3 2 1 5 5 C 1.39600 * 119.82021 * 180.20759 * 4 3 2 6 6 C 1.47739 * 120.09958 * 179.78883 * 5 4 3 7 7 O 1.21561 * 119.99524 * 20.19050 * 6 5 4 8 8 N 1.34771 * 119.99710 * 200.18751 * 6 5 4 9 9 C 1.46500 * 120.00419 * 7.07864 * 8 6 5 10 10 C 1.46504 * 119.99545 * 187.07008 * 8 6 5 11 11 C 1.50694 * 109.47529 * 270.00417 * 10 8 6 12 12 H 1.08002 * 120.00150 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00518 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00359 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99472 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46753 * 90.00311 * 15 13 11 17 17 H 1.48501 * 109.47107 * 209.99839 * 15 13 11 18 18 H 1.48492 * 109.47442 * 330.00378 * 15 13 11 19 19 C 1.39649 * 119.80260 * 359.50939 * 5 4 3 20 20 C 1.37884 * 119.98453 * 0.25730 * 19 5 4 21 21 C 1.38529 * 120.17888 * 359.97438 * 20 19 5 22 22 F 1.35099 * 119.90463 * 180.02562 * 21 20 19 23 23 H 1.09004 * 109.47126 * 299.99191 * 1 2 3 24 24 H 1.08991 * 109.47163 * 59.99556 * 1 2 3 25 25 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.08974 * 359.97076 * 4 3 2 27 27 H 1.09003 * 109.46760 * 267.44167 * 9 8 6 28 28 H 1.08993 * 109.47394 * 27.44186 * 9 8 6 29 29 H 1.08999 * 109.47044 * 147.44615 * 9 8 6 30 30 H 1.09004 * 109.46844 * 150.00183 * 10 8 6 31 31 H 1.08998 * 109.47052 * 30.00446 * 10 8 6 32 32 H 0.96996 * 119.99725 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.00470 * 180.27901 * 19 5 4 34 34 H 1.08000 * 119.91274 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2927 2.3714 0.0060 5 6 1.9302 3.6134 0.0016 6 6 1.1313 4.8562 0.0032 7 8 -0.0269 4.8337 0.3714 8 7 1.6869 6.0148 -0.4036 9 6 3.0284 6.0171 -0.9921 10 6 0.9490 7.2719 -0.2573 11 6 0.1302 7.5211 -1.4976 12 1 0.1564 6.8136 -2.3132 13 6 -0.6525 8.6524 -1.5914 14 7 -1.3666 8.8701 -2.6740 15 14 -0.6984 9.8757 -0.1804 16 1 0.3632 10.8958 -0.3750 17 1 -2.0250 10.5423 -0.1462 18 1 -0.4699 9.1618 1.1014 19 6 3.3252 3.6776 0.0015 20 6 4.0684 2.5162 0.0005 21 6 3.4352 1.2841 0.0000 22 9 4.1688 0.1497 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2141 2.3164 0.0101 27 1 3.7676 6.1945 -0.2108 28 1 3.2208 5.0526 -1.4620 29 1 3.0952 6.8060 -1.7413 30 1 1.6529 8.0920 -0.1157 31 1 0.2883 7.2069 0.6072 32 1 -1.9175 9.6657 -2.7397 33 1 3.8218 4.6367 0.0027 34 1 5.1472 2.5672 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128459594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:31 Heat of formation + Delta-G solvation = -61.455186 kcal Electronic energy + Delta-G solvation = -20001.285910 eV Core-core repulsion = 16622.623934 eV Total energy + Delta-G solvation = -3378.661976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.90401 -40.44215 -39.10222 -37.07713 -35.21207 -32.67441 -30.97471 -30.58125 -28.54161 -27.26639 -26.44281 -23.78314 -22.53135 -21.99050 -19.59402 -17.92368 -17.61996 -17.01235 -16.87797 -16.28073 -15.85411 -15.46624 -15.16283 -14.93984 -14.47395 -14.31619 -14.05712 -13.63310 -13.15476 -12.81403 -12.56692 -12.42638 -12.28206 -12.08116 -11.69398 -11.56104 -11.30044 -11.02969 -10.80452 -10.55830 -10.15316 -9.60902 -9.26944 -9.03594 -8.63114 -8.30475 -7.83022 -6.12117 -4.11458 0.71416 1.11978 2.96802 3.01953 3.23854 3.32171 3.35779 3.59729 3.89216 4.08229 4.36080 4.57588 4.68101 4.91615 4.98179 5.06588 5.09734 5.20549 5.33917 5.39715 5.47156 5.63106 5.74677 5.84202 5.96169 6.09821 6.19309 6.41479 6.59772 6.87786 7.09372 7.20340 7.55188 8.08161 8.41215 8.78194 8.91901 9.47240 11.01259 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.004678 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.690550 B = 5983.855197 C = 6504.227546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.311 6.311 3 C 0.085 3.915 4 C -0.127 4.127 5 C -0.090 4.090 6 C 0.547 3.453 7 O -0.529 6.529 8 N -0.588 5.588 9 C 0.068 3.932 10 C 0.216 3.784 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.264 1.264 19 C -0.120 4.120 20 C -0.126 4.126 21 C 0.082 3.918 22 F -0.133 7.133 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.150 0.850 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.164 0.836 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 -13.264 5.642 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.225 6.225 3 C 0.039 3.961 4 C -0.147 4.147 5 C -0.094 4.094 6 C 0.333 3.667 7 O -0.407 6.407 8 N -0.319 5.319 9 C -0.075 4.075 10 C 0.096 3.904 11 C -0.568 4.568 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.701 3.299 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.189 1.189 19 C -0.138 4.138 20 C -0.145 4.145 21 C 0.062 3.938 22 F -0.112 7.112 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.168 0.832 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.171 -13.339 5.747 17.731 hybrid contribution -0.228 0.644 0.483 0.836 sum 9.943 -12.696 6.230 17.287 Atomic orbital electron populations 1.23170 0.77544 1.04215 1.02233 1.86107 1.22037 1.25411 1.88927 1.18837 0.90710 0.85616 1.00928 1.21267 1.01256 0.89975 1.02175 1.20073 0.93800 0.93946 1.01551 1.18035 0.86470 0.82947 0.79213 1.90766 1.16237 1.85355 1.48314 1.47720 1.16863 1.08097 1.59188 1.22300 0.83724 1.03484 0.98029 1.19733 0.91973 0.79843 0.98867 1.21300 1.26099 1.07820 1.01600 0.90687 1.24858 0.94760 0.97696 0.95659 1.69893 1.28569 1.27665 1.27334 0.86865 0.77939 0.81615 0.83432 1.20031 1.20882 1.18862 1.22182 0.92947 0.99904 0.98775 1.20966 1.01094 0.89832 1.02602 1.17189 0.85925 0.82963 1.07765 1.91491 1.76600 1.48960 1.94105 0.92058 0.92035 0.87901 0.83248 0.92761 0.90592 0.90339 0.95274 0.94052 0.92507 0.81868 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.09 10.36 -19.64 -0.20 -4.29 16 3 C 0.09 1.18 6.69 -39.24 -0.26 0.92 16 4 C -0.13 -1.90 8.57 -39.04 -0.33 -2.24 16 5 C -0.09 -1.43 5.56 -104.98 -0.58 -2.02 16 6 C 0.55 11.16 7.51 -12.38 -0.09 11.07 16 7 O -0.53 -12.95 16.18 5.31 0.09 -12.87 16 8 N -0.59 -11.79 2.86 -184.12 -0.53 -12.31 16 9 C 0.07 0.97 8.65 59.85 0.52 1.49 16 10 C 0.22 5.14 4.19 -5.19 -0.02 5.12 16 11 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 12 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 13 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 15 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 19 C -0.12 -1.48 7.62 -39.18 -0.30 -1.78 16 20 C -0.13 -1.39 10.00 -39.60 -0.40 -1.79 16 21 C 0.08 1.07 7.31 -39.16 -0.29 0.78 16 22 F -0.13 -1.78 17.10 2.25 0.04 -1.75 16 23 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 24 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.15 2.23 6.01 -52.49 -0.32 1.92 16 27 H 0.05 0.60 6.92 -51.93 -0.36 0.24 16 28 H 0.08 0.95 5.37 -51.93 -0.28 0.67 16 29 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 30 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 31 H 0.04 1.06 6.59 -51.93 -0.34 0.72 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.16 1.69 4.01 -52.48 -0.21 1.48 16 34 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -34.35 292.37 -4.85 -39.19 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -3.55 Total: -1.63 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.21 Total: -0.57 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.25 Total: -38.92 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.12 Total: -17.16 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.35 -4.85 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128459594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.262 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds