Wall clock time and date at job start Mon Mar 30 2020 00:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35969 * 117.00127 * 2 1 4 4 C 1.38323 * 119.98897 * 0.28523 * 3 2 1 5 5 C 1.39600 * 119.82021 * 180.20759 * 4 3 2 6 6 C 1.47739 * 120.09958 * 179.78883 * 5 4 3 7 7 O 1.21561 * 119.99524 * 20.19050 * 6 5 4 8 8 N 1.34771 * 119.99710 * 200.18751 * 6 5 4 9 9 C 1.46500 * 120.00419 * 7.07864 * 8 6 5 10 10 C 1.46504 * 119.99545 * 187.07008 * 8 6 5 11 11 C 1.50694 * 109.47529 * 270.00417 * 10 8 6 12 12 H 1.08002 * 120.00150 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00518 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00359 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99472 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46753 * 90.00311 * 15 13 11 17 17 H 1.48501 * 109.47107 * 209.99839 * 15 13 11 18 18 H 1.48492 * 109.47442 * 330.00378 * 15 13 11 19 19 C 1.39649 * 119.80260 * 359.50939 * 5 4 3 20 20 C 1.37884 * 119.98453 * 0.25730 * 19 5 4 21 21 C 1.38529 * 120.17888 * 359.97438 * 20 19 5 22 22 F 1.35099 * 119.90463 * 180.02562 * 21 20 19 23 23 H 1.09004 * 109.47126 * 299.99191 * 1 2 3 24 24 H 1.08991 * 109.47163 * 59.99556 * 1 2 3 25 25 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.08974 * 359.97076 * 4 3 2 27 27 H 1.09003 * 109.46760 * 267.44167 * 9 8 6 28 28 H 1.08993 * 109.47394 * 27.44186 * 9 8 6 29 29 H 1.08999 * 109.47044 * 147.44615 * 9 8 6 30 30 H 1.09004 * 109.46844 * 150.00183 * 10 8 6 31 31 H 1.08998 * 109.47052 * 30.00446 * 10 8 6 32 32 H 0.96996 * 119.99725 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.00470 * 180.27901 * 19 5 4 34 34 H 1.08000 * 119.91274 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2927 2.3714 0.0060 5 6 1.9302 3.6134 0.0016 6 6 1.1313 4.8562 0.0032 7 8 -0.0269 4.8337 0.3714 8 7 1.6869 6.0148 -0.4036 9 6 3.0284 6.0171 -0.9921 10 6 0.9490 7.2719 -0.2573 11 6 0.1302 7.5211 -1.4976 12 1 0.1564 6.8136 -2.3132 13 6 -0.6525 8.6524 -1.5914 14 7 -1.3666 8.8701 -2.6740 15 14 -0.6984 9.8757 -0.1804 16 1 0.3632 10.8958 -0.3750 17 1 -2.0250 10.5423 -0.1462 18 1 -0.4699 9.1618 1.1014 19 6 3.3252 3.6776 0.0015 20 6 4.0684 2.5162 0.0005 21 6 3.4352 1.2841 0.0000 22 9 4.1688 0.1497 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2141 2.3164 0.0101 27 1 3.7676 6.1945 -0.2108 28 1 3.2208 5.0526 -1.4620 29 1 3.0952 6.8060 -1.7413 30 1 1.6529 8.0920 -0.1157 31 1 0.2883 7.2069 0.6072 32 1 -1.9175 9.6657 -2.7397 33 1 3.8218 4.6367 0.0027 34 1 5.1472 2.5672 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128459594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:31 Heat of formation + Delta-G solvation = -85.706956 kcal Electronic energy + Delta-G solvation = -20002.337546 eV Core-core repulsion = 16622.623934 eV Total energy + Delta-G solvation = -3379.713612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.93480 -41.64486 -40.37354 -38.22978 -36.83998 -34.75430 -32.24377 -31.71254 -30.11148 -28.29578 -27.82010 -25.33173 -23.60851 -23.46767 -20.97089 -19.16092 -19.14502 -18.70256 -18.01465 -17.29799 -17.12604 -17.02723 -16.44158 -16.12990 -15.82448 -15.59589 -15.28384 -15.15674 -14.44594 -14.30672 -13.99546 -13.76489 -13.57325 -13.41042 -13.10176 -12.89314 -12.55701 -12.44003 -12.27295 -12.02274 -11.83489 -11.76065 -10.88736 -10.81225 -10.11064 -9.47431 -9.33819 -8.33421 -6.39290 -0.42050 0.12056 1.33882 1.38690 1.49124 1.70483 2.04316 2.18545 2.32440 2.60757 3.00664 3.03892 3.45837 3.61317 3.89600 3.97272 4.27394 4.27796 4.34327 4.44434 4.57292 4.60841 4.66890 4.74927 4.82821 4.88324 4.97471 5.02869 5.16190 5.44313 5.46837 5.57911 6.10181 6.22137 6.56142 6.62463 7.16613 7.29690 8.83828 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.004678 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.690550 B = 5983.855197 C = 6504.227546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.079 3.921 4 C -0.138 4.138 5 C -0.111 4.111 6 C 0.538 3.462 7 O -0.588 6.588 8 N -0.595 5.595 9 C 0.057 3.943 10 C 0.223 3.777 11 C -0.538 4.538 12 H 0.025 0.975 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.951 3.049 16 H -0.248 1.248 17 H -0.284 1.284 18 H -0.253 1.253 19 C -0.104 4.104 20 C -0.104 4.104 21 C 0.079 3.921 22 F -0.133 7.133 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.268 0.732 33 H 0.191 0.809 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -13.176 7.053 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.032 3.968 4 C -0.158 4.158 5 C -0.114 4.114 6 C 0.328 3.672 7 O -0.470 6.470 8 N -0.325 5.325 9 C -0.083 4.083 10 C 0.101 3.899 11 C -0.577 4.577 12 H 0.043 0.957 13 C -0.188 4.188 14 N -0.587 5.587 15 Si 0.773 3.227 16 H -0.172 1.172 17 H -0.210 1.210 18 H -0.177 1.177 19 C -0.122 4.122 20 C -0.122 4.122 21 C 0.058 3.942 22 F -0.112 7.112 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.154 0.846 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.208 0.792 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 13.292 -13.270 7.142 20.094 hybrid contribution -1.168 0.474 -0.046 1.261 sum 12.124 -12.797 7.096 19.003 Atomic orbital electron populations 1.23394 0.76102 1.06074 1.02089 1.86094 1.23582 1.25147 1.88860 1.18933 0.91353 0.85390 1.01085 1.21170 1.00950 0.90464 1.03240 1.19782 0.95129 0.91743 1.04745 1.18767 0.86202 0.84271 0.77969 1.90717 1.18937 1.86365 1.50955 1.47810 1.18635 1.06822 1.59208 1.22717 0.81682 1.04532 0.99414 1.19441 0.92272 0.82648 0.95546 1.21540 1.27217 1.06826 1.02073 0.95668 1.25894 0.94056 1.00117 0.98730 1.70060 1.29861 1.28802 1.29991 0.85671 0.78576 0.78927 0.79532 1.17201 1.20991 1.17710 1.22399 0.91045 1.01651 0.97097 1.21367 1.02997 0.88047 0.99819 1.17497 0.85602 0.83763 1.07292 1.91495 1.76419 1.49231 1.94045 0.92083 0.92384 0.85018 0.84567 0.87918 0.88607 0.91084 0.92185 0.96000 0.92263 0.79241 0.79200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.32 -8.30 10.36 -93.20 -0.97 -9.26 16 3 C 0.08 2.12 6.69 22.49 0.15 2.27 16 4 C -0.14 -4.20 8.57 22.62 0.19 -4.01 16 5 C -0.11 -3.43 5.56 -20.10 -0.11 -3.55 16 6 C 0.54 22.36 7.51 86.76 0.65 23.01 16 7 O -0.59 -30.28 16.18 -3.91 -0.06 -30.35 16 8 N -0.60 -23.51 2.86 -854.71 -2.44 -25.95 16 9 C 0.06 1.48 8.65 127.77 1.10 2.58 16 10 C 0.22 10.56 4.19 85.63 0.36 10.92 16 11 C -0.54 -31.47 9.94 25.60 0.25 -31.22 16 12 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 13 C 0.01 0.58 5.47 84.65 0.46 1.04 16 14 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 15 Si 0.95 43.47 27.47 68.60 1.88 45.36 16 16 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 19 C -0.10 -2.19 7.62 22.53 0.17 -2.02 16 20 C -0.10 -1.83 10.00 22.26 0.22 -1.61 16 21 C 0.08 1.84 7.31 22.54 0.16 2.01 16 22 F -0.13 -3.20 17.10 44.97 0.77 -2.43 16 23 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 24 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 25 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.14 4.38 6.01 -2.91 -0.02 4.36 16 27 H 0.10 1.70 6.92 -2.39 -0.02 1.69 16 28 H 0.10 2.09 5.37 -2.39 -0.01 2.08 16 29 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 30 H 0.06 2.48 7.50 -2.38 -0.02 2.46 16 31 H 0.02 1.13 6.59 -2.39 -0.02 1.11 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.19 2.92 4.01 -2.91 -0.01 2.91 16 34 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -79.87 292.37 5.30 -74.57 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.08 Total: 6.63 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 4.74 Total: 0.88 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.14 Total: -85.40 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.03 Total: -39.61 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.77 Total: -2.43 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal Total: -79.87 5.30 -74.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128459594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.134 kcal (2) G-P(sol) polarization free energy of solvation -79.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds