Wall clock time and date at job start Mon Mar 30 2020 00:54:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35969 * 117.00127 * 2 1
4 4 C 1.38323 * 119.98897 * 0.28523 * 3 2 1
5 5 C 1.39600 * 119.82021 * 180.20759 * 4 3 2
6 6 C 1.47739 * 120.09958 * 179.78883 * 5 4 3
7 7 O 1.21561 * 119.99524 * 20.19050 * 6 5 4
8 8 N 1.34771 * 119.99710 * 200.18751 * 6 5 4
9 9 C 1.46500 * 120.00419 * 7.07864 * 8 6 5
10 10 C 1.46504 * 119.99545 * 187.07008 * 8 6 5
11 11 C 1.50694 * 109.47529 * 270.00417 * 10 8 6
12 12 H 1.08002 * 120.00150 * 0.02562 * 11 10 8
13 13 C 1.37878 * 120.00518 * 180.02562 * 11 10 8
14 14 N 1.31514 * 120.00359 * 179.97438 * 13 11 10
15 15 Si 1.86804 * 119.99472 * 359.97438 * 13 11 10
16 16 H 1.48507 * 109.46753 * 90.00311 * 15 13 11
17 17 H 1.48501 * 109.47107 * 209.99839 * 15 13 11
18 18 H 1.48492 * 109.47442 * 330.00378 * 15 13 11
19 19 C 1.39649 * 119.80260 * 359.50939 * 5 4 3
20 20 C 1.37884 * 119.98453 * 0.25730 * 19 5 4
21 21 C 1.38529 * 120.17888 * 359.97438 * 20 19 5
22 22 F 1.35099 * 119.90463 * 180.02562 * 21 20 19
23 23 H 1.09004 * 109.47126 * 299.99191 * 1 2 3
24 24 H 1.08991 * 109.47163 * 59.99556 * 1 2 3
25 25 H 1.08998 * 109.47101 * 179.97438 * 1 2 3
26 26 H 1.08002 * 120.08974 * 359.97076 * 4 3 2
27 27 H 1.09003 * 109.46760 * 267.44167 * 9 8 6
28 28 H 1.08993 * 109.47394 * 27.44186 * 9 8 6
29 29 H 1.08999 * 109.47044 * 147.44615 * 9 8 6
30 30 H 1.09004 * 109.46844 * 150.00183 * 10 8 6
31 31 H 1.08998 * 109.47052 * 30.00446 * 10 8 6
32 32 H 0.96996 * 119.99725 * 179.97438 * 14 13 11
33 33 H 1.08008 * 120.00470 * 180.27901 * 19 5 4
34 34 H 1.08000 * 119.91274 * 180.02562 * 20 19 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 1.2927 2.3714 0.0060
5 6 1.9302 3.6134 0.0016
6 6 1.1313 4.8562 0.0032
7 8 -0.0269 4.8337 0.3714
8 7 1.6869 6.0148 -0.4036
9 6 3.0284 6.0171 -0.9921
10 6 0.9490 7.2719 -0.2573
11 6 0.1302 7.5211 -1.4976
12 1 0.1564 6.8136 -2.3132
13 6 -0.6525 8.6524 -1.5914
14 7 -1.3666 8.8701 -2.6740
15 14 -0.6984 9.8757 -0.1804
16 1 0.3632 10.8958 -0.3750
17 1 -2.0250 10.5423 -0.1462
18 1 -0.4699 9.1618 1.1014
19 6 3.3252 3.6776 0.0015
20 6 4.0684 2.5162 0.0005
21 6 3.4352 1.2841 0.0000
22 9 4.1688 0.1497 -0.0005
23 1 -0.3633 0.5137 0.8901
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0276 -0.0005
26 1 0.2141 2.3164 0.0101
27 1 3.7676 6.1945 -0.2108
28 1 3.2208 5.0526 -1.4620
29 1 3.0952 6.8060 -1.7413
30 1 1.6529 8.0920 -0.1157
31 1 0.2883 7.2069 0.6072
32 1 -1.9175 9.6657 -2.7397
33 1 3.8218 4.6367 0.0027
34 1 5.1472 2.5672 0.0009
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000128459594.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:31
Heat of formation + Delta-G solvation = -85.706956 kcal
Electronic energy + Delta-G solvation = -20002.337546 eV
Core-core repulsion = 16622.623934 eV
Total energy + Delta-G solvation = -3379.713612 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-49.93480 -41.64486 -40.37354 -38.22978 -36.83998 -34.75430 -32.24377 -31.71254
-30.11148 -28.29578 -27.82010 -25.33173 -23.60851 -23.46767 -20.97089 -19.16092
-19.14502 -18.70256 -18.01465 -17.29799 -17.12604 -17.02723 -16.44158 -16.12990
-15.82448 -15.59589 -15.28384 -15.15674 -14.44594 -14.30672 -13.99546 -13.76489
-13.57325 -13.41042 -13.10176 -12.89314 -12.55701 -12.44003 -12.27295 -12.02274
-11.83489 -11.76065 -10.88736 -10.81225 -10.11064 -9.47431 -9.33819 -8.33421
-6.39290 -0.42050 0.12056 1.33882 1.38690 1.49124 1.70483 2.04316
2.18545 2.32440 2.60757 3.00664 3.03892 3.45837 3.61317 3.89600
3.97272 4.27394 4.27796 4.34327 4.44434 4.57292 4.60841 4.66890
4.74927 4.82821 4.88324 4.97471 5.02869 5.16190 5.44313 5.46837
5.57911 6.10181 6.22137 6.56142 6.62463 7.16613 7.29690 8.83828
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.031323 B = 0.004678 C = 0.004304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.690550 B = 5983.855197 C = 6504.227546
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.323 6.323
3 C 0.079 3.921
4 C -0.138 4.138
5 C -0.111 4.111
6 C 0.538 3.462
7 O -0.588 6.588
8 N -0.595 5.595
9 C 0.057 3.943
10 C 0.223 3.777
11 C -0.538 4.538
12 H 0.025 0.975
13 C 0.010 3.990
14 N -0.947 5.947
15 Si 0.951 3.049
16 H -0.248 1.248
17 H -0.284 1.284
18 H -0.253 1.253
19 C -0.104 4.104
20 C -0.104 4.104
21 C 0.079 3.921
22 F -0.133 7.133
23 H 0.061 0.939
24 H 0.057 0.943
25 H 0.132 0.868
26 H 0.137 0.863
27 H 0.103 0.897
28 H 0.096 0.904
29 H 0.070 0.930
30 H 0.060 0.940
31 H 0.022 0.978
32 H 0.268 0.732
33 H 0.191 0.809
34 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.883 -13.176 7.053 20.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.237 6.237
3 C 0.032 3.968
4 C -0.158 4.158
5 C -0.114 4.114
6 C 0.328 3.672
7 O -0.470 6.470
8 N -0.325 5.325
9 C -0.083 4.083
10 C 0.101 3.899
11 C -0.577 4.577
12 H 0.043 0.957
13 C -0.188 4.188
14 N -0.587 5.587
15 Si 0.773 3.227
16 H -0.172 1.172
17 H -0.210 1.210
18 H -0.177 1.177
19 C -0.122 4.122
20 C -0.122 4.122
21 C 0.058 3.942
22 F -0.112 7.112
23 H 0.079 0.921
24 H 0.076 0.924
25 H 0.150 0.850
26 H 0.154 0.846
27 H 0.121 0.879
28 H 0.114 0.886
29 H 0.089 0.911
30 H 0.078 0.922
31 H 0.040 0.960
32 H 0.077 0.923
33 H 0.208 0.792
34 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges 13.292 -13.270 7.142 20.094
hybrid contribution -1.168 0.474 -0.046 1.261
sum 12.124 -12.797 7.096 19.003
Atomic orbital electron populations
1.23394 0.76102 1.06074 1.02089 1.86094 1.23582 1.25147 1.88860
1.18933 0.91353 0.85390 1.01085 1.21170 1.00950 0.90464 1.03240
1.19782 0.95129 0.91743 1.04745 1.18767 0.86202 0.84271 0.77969
1.90717 1.18937 1.86365 1.50955 1.47810 1.18635 1.06822 1.59208
1.22717 0.81682 1.04532 0.99414 1.19441 0.92272 0.82648 0.95546
1.21540 1.27217 1.06826 1.02073 0.95668 1.25894 0.94056 1.00117
0.98730 1.70060 1.29861 1.28802 1.29991 0.85671 0.78576 0.78927
0.79532 1.17201 1.20991 1.17710 1.22399 0.91045 1.01651 0.97097
1.21367 1.02997 0.88047 0.99819 1.17497 0.85602 0.83763 1.07292
1.91495 1.76419 1.49231 1.94045 0.92083 0.92384 0.85018 0.84567
0.87918 0.88607 0.91084 0.92185 0.96000 0.92263 0.79241 0.79200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.34 9.81 113.37 1.11 1.45 16
2 O -0.32 -8.30 10.36 -93.20 -0.97 -9.26 16
3 C 0.08 2.12 6.69 22.49 0.15 2.27 16
4 C -0.14 -4.20 8.57 22.62 0.19 -4.01 16
5 C -0.11 -3.43 5.56 -20.10 -0.11 -3.55 16
6 C 0.54 22.36 7.51 86.76 0.65 23.01 16
7 O -0.59 -30.28 16.18 -3.91 -0.06 -30.35 16
8 N -0.60 -23.51 2.86 -854.71 -2.44 -25.95 16
9 C 0.06 1.48 8.65 127.77 1.10 2.58 16
10 C 0.22 10.56 4.19 85.63 0.36 10.92 16
11 C -0.54 -31.47 9.94 25.60 0.25 -31.22 16
12 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16
13 C 0.01 0.58 5.47 84.65 0.46 1.04 16
14 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16
15 Si 0.95 43.47 27.47 68.60 1.88 45.36 16
16 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16
17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
18 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16
19 C -0.10 -2.19 7.62 22.53 0.17 -2.02 16
20 C -0.10 -1.83 10.00 22.26 0.22 -1.61 16
21 C 0.08 1.84 7.31 22.54 0.16 2.01 16
22 F -0.13 -3.20 17.10 44.97 0.77 -2.43 16
23 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16
24 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16
25 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16
26 H 0.14 4.38 6.01 -2.91 -0.02 4.36 16
27 H 0.10 1.70 6.92 -2.39 -0.02 1.69 16
28 H 0.10 2.09 5.37 -2.39 -0.01 2.08 16
29 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16
30 H 0.06 2.48 7.50 -2.38 -0.02 2.46 16
31 H 0.02 1.13 6.59 -2.39 -0.02 1.11 16
32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16
33 H 0.19 2.92 4.01 -2.91 -0.01 2.91 16
34 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16
Total: -1.00 -79.87 292.37 5.30 -74.57
By element:
Atomic # 1 Polarization: 5.55 SS G_CDS: 1.08 Total: 6.63 kcal
Atomic # 6 Polarization: -3.85 SS G_CDS: 4.74 Total: 0.88 kcal
Atomic # 7 Polarization: -83.26 SS G_CDS: -2.14 Total: -85.40 kcal
Atomic # 8 Polarization: -38.58 SS G_CDS: -1.03 Total: -39.61 kcal
Atomic # 9 Polarization: -3.20 SS G_CDS: 0.77 Total: -2.43 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal
Total: -79.87 5.30 -74.57 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000128459594.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.134 kcal
(2) G-P(sol) polarization free energy of solvation -79.872 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds