Wall clock time and date at job start Mon Mar 30 2020 00:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47445 * 2 1 4 4 C 1.50695 * 109.47191 * 120.00645 * 2 1 3 5 5 H 1.07998 * 120.00125 * 120.00085 * 4 2 1 6 6 C 1.37880 * 120.00005 * 299.99565 * 4 2 1 7 7 N 1.31516 * 119.99780 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00160 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46975 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46765 * 299.99683 * 8 6 4 11 11 H 1.48496 * 109.47259 * 60.00136 * 8 6 4 12 12 N 1.46506 * 109.46651 * 240.00382 * 2 1 3 13 13 C 1.46495 * 119.99861 * 299.99435 * 12 2 1 14 14 C 1.34774 * 119.99829 * 120.00436 * 12 2 1 15 15 O 1.21592 * 119.99969 * 355.60375 * 14 12 2 16 16 C 1.47539 * 120.00111 * 175.61191 * 14 12 2 17 17 C 1.39721 * 120.17682 * 48.16963 * 16 14 12 18 18 C 1.37990 * 119.87682 * 179.79233 * 17 16 14 19 19 F 1.35106 * 119.87304 * 180.25366 * 18 17 16 20 20 C 1.38729 * 120.24956 * 0.46619 * 18 17 16 21 21 C 1.38050 * 120.36360 * 359.78964 * 20 18 17 22 22 C 1.38691 * 120.11841 * 359.97438 * 21 20 18 23 23 O 1.35693 * 120.12738 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47445 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47004 * 299.99989 * 1 2 3 26 26 H 1.08995 * 109.47390 * 59.99420 * 1 2 3 27 27 H 0.97002 * 119.99680 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46862 * 94.83820 * 13 12 2 29 29 H 1.08997 * 109.47218 * 214.82677 * 13 12 2 30 30 H 1.08994 * 109.47604 * 334.83233 * 13 12 2 31 31 H 1.07996 * 120.06218 * 0.02562 * 17 16 14 32 32 H 1.07995 * 119.81865 * 179.76067 * 20 18 17 33 33 H 1.07999 * 119.94568 * 179.97438 * 21 20 18 34 34 H 0.96693 * 114.00447 * 270.02470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 1.8270 -0.4203 5.2204 10 1 1.8279 -2.5201 4.0080 11 1 3.8075 -1.1193 4.0076 12 7 2.0182 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0212 1.1493 -1.9329 16 6 3.3644 -0.7561 -3.2372 17 6 2.5526 -1.5759 -4.0253 18 6 3.0926 -2.2436 -5.1055 19 9 2.3064 -3.0323 -5.8705 20 6 4.4404 -2.1115 -5.4062 21 6 5.2528 -1.3083 -4.6312 22 6 4.7251 -0.6265 -3.5449 23 8 5.5236 0.1626 -2.7827 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7082 1.1606 3.4845 28 1 0.7858 -2.1446 -2.0713 29 1 2.4980 -2.6033 -1.9105 30 1 1.4458 -2.5750 -0.4752 31 1 1.5038 -1.6840 -3.7917 32 1 4.8565 -2.6403 -6.2510 33 1 6.3013 -1.2107 -4.8712 34 1 5.9385 -0.2977 -2.0405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128563185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:02 Heat of formation + Delta-G solvation = -89.172653 kcal Electronic energy + Delta-G solvation = -20425.378740 eV Core-core repulsion = 17045.514845 eV Total energy + Delta-G solvation = -3379.863896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.97347 -40.23893 -38.27701 -36.50937 -35.32308 -33.05052 -31.47705 -29.48167 -29.03193 -26.28963 -25.26477 -24.08894 -22.75307 -21.16078 -19.10449 -18.32135 -17.31508 -16.88889 -16.46748 -16.11550 -15.60199 -15.38172 -15.18586 -14.55976 -14.27906 -13.91433 -13.79418 -13.19394 -12.93377 -12.53422 -12.30903 -11.95679 -11.93719 -11.61217 -11.40876 -11.09397 -10.89551 -10.76895 -10.65498 -10.29896 -10.21376 -9.30157 -9.22471 -9.01391 -8.57114 -8.46419 -7.66542 -6.11200 -4.19990 0.78470 0.97090 3.03753 3.24833 3.30503 3.31140 3.53723 3.80116 4.10590 4.19659 4.35366 4.60419 4.71510 5.00645 5.16667 5.20087 5.54836 5.69314 5.72195 5.83446 5.91111 5.96052 6.15974 6.31336 6.57119 6.72538 6.80452 7.02264 7.35637 7.47321 7.66420 7.67681 7.96767 8.14060 8.43263 8.76271 8.95178 9.46496 10.94087 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.005420 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.681987 B = 5164.377321 C = 5461.005242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.585 5.585 13 C 0.080 3.920 14 C 0.545 3.455 15 O -0.526 6.526 16 C -0.112 4.112 17 C -0.111 4.111 18 C 0.081 3.919 19 F -0.139 7.139 20 C -0.126 4.126 21 C -0.125 4.125 22 C 0.144 3.856 23 O -0.479 6.479 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.265 0.735 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -8.510 -12.567 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.064 4.064 14 C 0.331 3.669 15 O -0.404 6.404 16 C -0.116 4.116 17 C -0.131 4.131 18 C 0.061 3.939 19 F -0.117 7.117 20 C -0.146 4.146 21 C -0.143 4.143 22 C 0.098 3.902 23 O -0.289 6.289 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.212 -7.337 -12.706 15.570 hybrid contribution 0.244 -1.101 1.024 1.523 sum 5.456 -8.438 -11.682 15.409 Atomic orbital electron populations 1.22089 0.98013 0.99471 1.00936 1.18995 0.91048 0.94536 0.79553 0.91772 1.21255 1.32163 1.13117 0.90229 0.92273 1.24894 0.94888 0.94953 0.98960 1.69871 1.36054 1.22486 1.23962 0.86538 0.79207 0.79555 0.81972 1.21121 1.20233 1.20241 1.48230 1.48344 1.11667 1.23352 1.21774 0.98734 0.83313 1.02566 1.17924 0.79965 0.86920 0.82136 1.90795 1.59992 1.14701 1.74867 1.20535 0.94409 0.98378 0.98313 1.21351 1.01540 0.96031 0.94128 1.17484 0.89082 0.95017 0.92276 1.91507 1.74081 1.72028 1.74105 1.21067 0.91828 1.00469 1.01187 1.21223 1.00887 0.96560 0.95678 1.18449 0.88413 0.90852 0.92486 1.84824 1.63256 1.36712 1.44139 0.95099 0.88732 0.96920 0.92538 0.93795 0.92749 0.89702 0.83531 0.84209 0.83962 0.74801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.53 2.63 -69.08 -0.18 6.35 16 3 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -13.96 7.96 -34.44 -0.27 -14.23 16 5 H 0.06 1.52 7.42 -52.49 -0.39 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.58 -12.39 2.75 -176.50 -0.49 -12.87 16 13 C 0.08 1.33 7.99 59.84 0.48 1.81 16 14 C 0.55 11.56 6.97 -12.47 -0.09 11.47 16 15 O -0.53 -13.40 15.84 -4.65 -0.07 -13.47 16 16 C -0.11 -1.86 4.93 -104.85 -0.52 -2.38 16 17 C -0.11 -1.55 7.73 -39.12 -0.30 -1.85 16 18 C 0.08 0.99 7.28 -39.49 -0.29 0.70 16 19 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 20 C -0.13 -1.32 10.01 -39.47 -0.39 -1.71 16 21 C -0.12 -1.38 9.97 -39.48 -0.39 -1.78 16 22 C 0.14 2.11 6.69 -38.71 -0.26 1.86 16 23 O -0.48 -7.30 12.53 -28.72 -0.36 -7.66 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.09 2.46 6.07 -51.92 -0.32 2.15 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.04 0.64 7.05 -51.93 -0.37 0.27 16 29 H 0.05 0.78 6.23 -51.93 -0.32 0.46 16 30 H 0.08 1.49 7.09 -51.93 -0.37 1.12 16 31 H 0.15 1.94 6.23 -52.49 -0.33 1.62 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.39 4.35 9.06 45.56 0.41 4.76 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -31.92 293.29 -5.67 -37.59 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.84 Total: 3.43 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.98 Total: -1.24 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.14 Total: -36.98 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.43 Total: -21.13 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.92 -5.67 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128563185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.578 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds