Wall clock time and date at job start Mon Mar 30 2020 00:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47445 * 2 1 4 4 C 1.50695 * 109.47191 * 120.00645 * 2 1 3 5 5 H 1.07998 * 120.00125 * 120.00085 * 4 2 1 6 6 C 1.37880 * 120.00005 * 299.99565 * 4 2 1 7 7 N 1.31516 * 119.99780 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00160 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46975 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46765 * 299.99683 * 8 6 4 11 11 H 1.48496 * 109.47259 * 60.00136 * 8 6 4 12 12 N 1.46506 * 109.46651 * 240.00382 * 2 1 3 13 13 C 1.46495 * 119.99861 * 299.99435 * 12 2 1 14 14 C 1.34774 * 119.99829 * 120.00436 * 12 2 1 15 15 O 1.21592 * 119.99969 * 355.60375 * 14 12 2 16 16 C 1.47539 * 120.00111 * 175.61191 * 14 12 2 17 17 C 1.39721 * 120.17682 * 48.16963 * 16 14 12 18 18 C 1.37990 * 119.87682 * 179.79233 * 17 16 14 19 19 F 1.35106 * 119.87304 * 180.25366 * 18 17 16 20 20 C 1.38729 * 120.24956 * 0.46619 * 18 17 16 21 21 C 1.38050 * 120.36360 * 359.78964 * 20 18 17 22 22 C 1.38691 * 120.11841 * 359.97438 * 21 20 18 23 23 O 1.35693 * 120.12738 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47445 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47004 * 299.99989 * 1 2 3 26 26 H 1.08995 * 109.47390 * 59.99420 * 1 2 3 27 27 H 0.97002 * 119.99680 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46862 * 94.83820 * 13 12 2 29 29 H 1.08997 * 109.47218 * 214.82677 * 13 12 2 30 30 H 1.08994 * 109.47604 * 334.83233 * 13 12 2 31 31 H 1.07996 * 120.06218 * 0.02562 * 17 16 14 32 32 H 1.07995 * 119.81865 * 179.76067 * 20 18 17 33 33 H 1.07999 * 119.94568 * 179.97438 * 21 20 18 34 34 H 0.96693 * 114.00447 * 270.02470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 1.8270 -0.4203 5.2204 10 1 1.8279 -2.5201 4.0080 11 1 3.8075 -1.1193 4.0076 12 7 2.0182 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0212 1.1493 -1.9329 16 6 3.3644 -0.7561 -3.2372 17 6 2.5526 -1.5759 -4.0253 18 6 3.0926 -2.2436 -5.1055 19 9 2.3064 -3.0323 -5.8705 20 6 4.4404 -2.1115 -5.4062 21 6 5.2528 -1.3083 -4.6312 22 6 4.7251 -0.6265 -3.5449 23 8 5.5236 0.1626 -2.7827 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7082 1.1606 3.4845 28 1 0.7858 -2.1446 -2.0713 29 1 2.4980 -2.6033 -1.9105 30 1 1.4458 -2.5750 -0.4752 31 1 1.5038 -1.6840 -3.7917 32 1 4.8565 -2.6403 -6.2510 33 1 6.3013 -1.2107 -4.8712 34 1 5.9385 -0.2977 -2.0405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128563185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:02 Heat of formation + Delta-G solvation = -111.102154 kcal Electronic energy + Delta-G solvation = -20426.329675 eV Core-core repulsion = 17045.514845 eV Total energy + Delta-G solvation = -3380.814830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91632 -41.54436 -39.70210 -37.62277 -37.10613 -34.89535 -32.81022 -30.95679 -30.33729 -27.76424 -27.32159 -25.36807 -23.82755 -22.73086 -20.62700 -19.41469 -18.75382 -18.30164 -18.03249 -17.46090 -16.99296 -16.65077 -16.35984 -16.13957 -15.85282 -15.10622 -14.84626 -14.71082 -14.37748 -14.01232 -13.79283 -13.56267 -13.21695 -12.96821 -12.93927 -12.74005 -12.67608 -12.62905 -12.21035 -12.13326 -11.80126 -11.24037 -10.79002 -10.52498 -10.18348 -9.61405 -9.38632 -8.15501 -6.32739 -0.27312 -0.00254 1.42388 1.44601 1.52187 1.68900 2.18233 2.41704 2.45562 3.08922 3.12745 3.16732 3.50971 3.72530 3.99812 4.17670 4.36110 4.52741 4.61196 4.73635 4.78652 4.86507 4.89620 4.96222 5.00537 5.02679 5.17787 5.44424 5.54918 5.63628 5.65103 5.99631 6.13044 6.68804 6.72274 6.74441 7.23429 7.41555 8.89120 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.005420 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.681987 B = 5164.377321 C = 5461.005242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.009 0.991 4 C -0.540 4.540 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.285 1.285 10 H -0.262 1.262 11 H -0.275 1.275 12 N -0.590 5.590 13 C 0.079 3.921 14 C 0.541 3.459 15 O -0.586 6.586 16 C -0.141 4.141 17 C -0.111 4.111 18 C 0.081 3.919 19 F -0.136 7.136 20 C -0.102 4.102 21 C -0.110 4.110 22 C 0.132 3.868 23 O -0.501 6.501 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.181 0.819 33 H 0.177 0.823 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -11.323 -14.213 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.027 0.973 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.210 1.210 10 H -0.187 1.187 11 H -0.200 1.200 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.329 3.671 15 O -0.467 6.467 16 C -0.145 4.145 17 C -0.131 4.131 18 C 0.062 3.938 19 F -0.115 7.115 20 C -0.120 4.120 21 C -0.128 4.128 22 C 0.086 3.914 23 O -0.314 6.314 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.166 0.834 32 H 0.198 0.802 33 H 0.194 0.806 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.414 -10.207 -14.371 18.758 hybrid contribution -0.101 -0.237 1.434 1.456 sum 6.313 -10.444 -12.938 17.785 Atomic orbital electron populations 1.21885 0.97041 1.00235 0.99971 1.18598 0.91756 0.92230 0.81385 0.97318 1.21509 1.32213 1.13209 0.90871 0.91800 1.25762 0.94989 0.95597 1.02087 1.70025 1.37132 1.23879 1.24579 0.85472 0.78487 0.78911 0.77925 1.21030 1.18678 1.20036 1.48193 1.48323 1.13298 1.22188 1.21986 1.00812 0.80661 1.02851 1.18642 0.78978 0.86467 0.82980 1.90745 1.61918 1.17384 1.76660 1.20158 0.95738 1.00725 0.97889 1.21281 1.01404 0.95791 0.94583 1.17510 0.89876 0.94718 0.91692 1.91523 1.74242 1.71848 1.73840 1.21514 0.90601 0.98792 1.01122 1.21500 1.02552 0.95051 0.93685 1.18786 0.87722 0.91340 0.93554 1.84778 1.63458 1.38120 1.45050 0.93257 0.91211 0.96320 0.92578 0.91389 0.90142 0.90557 0.83406 0.80174 0.80552 0.73279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.97 71.98 0.65 -5.85 16 2 C 0.26 13.81 2.63 44.24 0.12 13.93 16 3 H 0.01 0.56 6.91 -2.39 -0.02 0.54 16 4 C -0.54 -29.07 7.96 25.60 0.20 -28.87 16 5 H 0.06 3.30 7.42 -2.91 -0.02 3.27 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 8 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.59 -25.59 2.75 -830.59 -2.29 -27.88 16 13 C 0.08 2.56 7.99 127.77 1.02 3.58 16 14 C 0.54 23.77 6.97 86.70 0.60 24.38 16 15 O -0.59 -31.75 15.84 5.50 0.09 -31.66 16 16 C -0.14 -4.60 4.93 -20.01 -0.10 -4.70 16 17 C -0.11 -2.89 7.73 22.57 0.17 -2.72 16 18 C 0.08 1.70 7.28 22.33 0.16 1.86 16 19 F -0.14 -2.82 17.26 44.97 0.78 -2.05 16 20 C -0.10 -1.61 10.01 22.34 0.22 -1.39 16 21 C -0.11 -1.99 9.97 22.33 0.22 -1.77 16 22 C 0.13 3.69 6.69 22.83 0.15 3.84 16 23 O -0.50 -15.26 12.53 -80.62 -1.01 -16.27 16 24 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 25 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.07 1.87 7.05 -2.39 -0.02 1.85 16 29 H 0.08 2.18 6.23 -2.39 -0.01 2.16 16 30 H 0.08 2.60 7.09 -2.39 -0.02 2.58 16 31 H 0.15 3.68 6.23 -2.91 -0.02 3.67 16 32 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.41 9.06 9.06 -74.06 -0.67 8.39 16 Total: -1.00 -73.22 293.29 4.19 -69.03 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.48 Total: 13.46 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 3.88 Total: 3.57 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -2.04 Total: -80.51 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.92 Total: -47.93 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -73.22 4.19 -69.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128563185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.072 kcal (2) G-P(sol) polarization free energy of solvation -73.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds