Wall clock time and date at job start Mon Mar 30 2020 00:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 109.47222 * 2 1
4 4 C 1.50701 * 109.46880 * 240.00368 * 2 1 3
5 5 H 1.08002 * 119.99791 * 239.99547 * 4 2 1
6 6 C 1.37877 * 120.00332 * 59.99838 * 4 2 1
7 7 N 1.31518 * 119.99712 * 0.02562 * 6 4 2
8 8 Si 1.86794 * 120.00176 * 179.97438 * 6 4 2
9 9 H 1.48502 * 109.47174 * 60.00393 * 8 6 4
10 10 H 1.48497 * 109.47196 * 180.02562 * 8 6 4
11 11 H 1.48495 * 109.47566 * 300.00219 * 8 6 4
12 12 N 1.46499 * 109.47430 * 120.00287 * 2 1 3
13 13 C 1.46502 * 120.00019 * 59.99724 * 12 2 1
14 14 C 1.34777 * 120.00161 * 239.99900 * 12 2 1
15 15 O 1.21590 * 119.99989 * 5.08600 * 14 12 2
16 16 C 1.47531 * 120.00070 * 185.08121 * 14 12 2
17 17 C 1.39724 * 120.18113 * 314.99168 * 16 14 12
18 18 C 1.37981 * 119.88314 * 179.78707 * 17 16 14
19 19 F 1.35103 * 119.88060 * 180.25112 * 18 17 16
20 20 C 1.38735 * 120.24756 * 0.46946 * 18 17 16
21 21 C 1.38050 * 120.36301 * 359.78366 * 20 18 17
22 22 C 1.38686 * 120.11800 * 359.97438 * 21 20 18
23 23 O 1.35697 * 120.13040 * 179.97438 * 22 21 20
24 24 H 1.09003 * 109.47222 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47025 * 299.99865 * 1 2 3
26 26 H 1.09003 * 109.47355 * 59.99246 * 1 2 3
27 27 H 0.96995 * 119.99790 * 179.97438 * 7 6 4
28 28 H 1.09006 * 109.47117 * 275.33064 * 13 12 2
29 29 H 1.08993 * 109.47334 * 155.32687 * 13 12 2
30 30 H 1.08998 * 109.46936 * 35.32754 * 13 12 2
31 31 H 1.07999 * 120.05859 * 359.97438 * 17 16 14
32 32 H 1.07997 * 119.82014 * 179.76392 * 20 18 17
33 33 H 1.08007 * 119.94439 * 179.97438 * 21 20 18
34 34 H 0.96704 * 113.99691 * 270.01907 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6991 -0.2393 -2.4828
7 7 0.9434 0.8303 -2.6034
8 14 2.3223 -1.1194 -4.0080
9 1 1.8278 -2.5196 -4.0083
10 1 1.8277 -0.4190 -5.2204
11 1 3.8072 -1.1189 -4.0079
12 7 2.0183 -0.6907 1.1961
13 6 1.6644 -2.0932 1.4279
14 6 2.7932 -0.0357 2.0833
15 8 3.0110 1.1519 1.9399
16 6 3.3772 -0.7598 3.2284
17 6 2.5928 -1.6425 3.9753
18 6 3.1464 -2.3198 5.0423
19 9 2.3893 -3.1771 5.7613
20 6 4.4766 -2.1203 5.3825
21 6 5.2595 -1.2466 4.6548
22 6 4.7199 -0.5617 3.5764
23 8 5.4891 0.2975 2.8612
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5140 -0.8899
27 1 0.7094 1.1619 -3.4843
28 1 0.6911 -2.1465 1.9158
29 1 2.4166 -2.5571 2.0659
30 1 1.6221 -2.6196 0.4744
31 1 1.5558 -1.7966 3.7159
32 1 4.9018 -2.6512 6.2214
33 1 6.2941 -1.0962 4.9259
34 1 5.4751 1.2062 3.1918
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000128563413.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:30:05
Heat of formation + Delta-G solvation = -87.961935 kcal
Electronic energy + Delta-G solvation = -20424.765985 eV
Core-core repulsion = 17044.954590 eV
Total energy + Delta-G solvation = -3379.811395 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.97743 -40.26815 -38.26501 -36.52363 -35.31518 -33.06041 -31.48972 -29.46761
-29.01954 -26.31220 -25.24462 -24.07571 -22.75530 -21.16652 -19.11072 -18.30015
-17.31392 -16.90298 -16.46711 -16.00404 -15.67765 -15.40860 -15.20703 -14.43327
-14.26271 -14.02757 -13.79504 -13.15180 -13.02809 -12.51480 -12.20986 -12.06414
-11.91377 -11.59065 -11.36545 -11.06910 -10.85433 -10.75853 -10.65163 -10.28566
-10.17513 -9.31597 -9.20745 -9.01493 -8.57049 -8.43864 -7.65805 -6.08616
-4.16747 0.76602 0.96464 3.03637 3.28227 3.33130 3.34715 3.52162
3.82825 4.16285 4.18851 4.38707 4.59623 4.70763 4.99754 5.15555
5.22885 5.54118 5.68822 5.73788 5.83368 5.91475 5.96487 6.15480
6.34836 6.56721 6.73082 6.80379 7.02879 7.35105 7.48822 7.68890
7.70393 7.98577 8.15965 8.44217 8.77132 8.94970 9.49480 10.96783
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.025564 B = 0.005424 C = 0.005135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.021611 B = 5160.868008 C = 5451.884656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.259 3.741
3 H 0.065 0.935
4 C -0.528 4.528
5 H 0.060 0.940
6 C 0.066 3.934
7 N -0.887 5.887
8 Si 0.900 3.100
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.276 1.276
12 N -0.581 5.581
13 C 0.074 3.926
14 C 0.552 3.448
15 O -0.541 6.541
16 C -0.116 4.116
17 C -0.111 4.111
18 C 0.079 3.921
19 F -0.138 7.138
20 C -0.125 4.125
21 C -0.126 4.126
22 C 0.148 3.852
23 O -0.483 6.483
24 H 0.030 0.970
25 H 0.012 0.988
26 H 0.094 0.906
27 H 0.264 0.736
28 H 0.047 0.953
29 H 0.061 0.939
30 H 0.081 0.919
31 H 0.148 0.852
32 H 0.140 0.860
33 H 0.143 0.857
34 H 0.400 0.600
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.668 -5.975 14.657 16.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.159 3.841
3 H 0.083 0.917
4 C -0.566 4.566
5 H 0.078 0.922
6 C -0.137 4.137
7 N -0.525 5.525
8 Si 0.727 3.273
9 H -0.202 1.202
10 H -0.211 1.211
11 H -0.202 1.202
12 N -0.311 5.311
13 C -0.070 4.070
14 C 0.338 3.662
15 O -0.420 6.420
16 C -0.120 4.120
17 C -0.130 4.130
18 C 0.060 3.940
19 F -0.117 7.117
20 C -0.144 4.144
21 C -0.145 4.145
22 C 0.101 3.899
23 O -0.294 6.294
24 H 0.049 0.951
25 H 0.031 0.969
26 H 0.113 0.887
27 H 0.074 0.926
28 H 0.066 0.934
29 H 0.079 0.921
30 H 0.099 0.901
31 H 0.166 0.834
32 H 0.158 0.842
33 H 0.161 0.839
34 H 0.258 0.742
Dipole moment (debyes) X Y Z Total
from point charges 4.759 -5.739 14.066 15.920
hybrid contribution 0.037 -0.384 -0.479 0.615
sum 4.796 -6.123 13.588 15.656
Atomic orbital electron populations
1.22084 0.97977 0.99498 1.00918 1.18995 0.91020 0.94505 0.79557
0.91745 1.21267 1.31989 1.13149 0.90231 0.92227 1.24882 0.94879
0.94972 0.98954 1.69869 1.36240 1.22508 1.23931 0.86532 0.79297
0.79553 0.81888 1.20215 1.21127 1.20194 1.48182 1.47992 1.11662
1.23240 1.21915 0.98839 0.83481 1.02779 1.17856 0.79467 0.86802
0.82042 1.90729 1.61276 1.14725 1.75313 1.20550 0.93947 0.99087
0.98382 1.21415 1.01623 0.95746 0.94264 1.17480 0.89820 0.93546
0.93198 1.91507 1.75698 1.67824 1.76677 1.21079 0.92206 0.99821
1.01285 1.21227 1.00901 0.98011 0.94341 1.18439 0.87834 0.93355
0.90245 1.84730 1.66620 1.22599 1.55475 0.95079 0.96929 0.88705
0.92581 0.93425 0.92070 0.90056 0.83405 0.84193 0.83942 0.74183
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.50 8.97 37.15 0.33 -3.17 16
2 C 0.26 6.65 2.63 -69.09 -0.18 6.47 16
3 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16
4 C -0.53 -14.34 8.03 -34.44 -0.28 -14.62 16
5 H 0.06 1.60 7.25 -52.49 -0.38 1.22 16
6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16
7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16
8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16
9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
12 N -0.58 -12.64 2.75 -176.50 -0.49 -13.12 16
13 C 0.07 1.28 8.04 59.85 0.48 1.76 16
14 C 0.55 11.75 7.05 -12.47 -0.09 11.66 16
15 O -0.54 -13.21 15.68 -7.79 -0.12 -13.33 16
16 C -0.12 -1.92 5.08 -104.85 -0.53 -2.45 16
17 C -0.11 -1.54 7.43 -39.12 -0.29 -1.83 16
18 C 0.08 0.96 7.28 -39.49 -0.29 0.67 16
19 F -0.14 -1.68 17.26 2.25 0.04 -1.64 16
20 C -0.12 -1.30 10.01 -39.47 -0.39 -1.69 16
21 C -0.13 -1.40 9.97 -39.48 -0.39 -1.79 16
22 C 0.15 2.17 6.69 -38.71 -0.26 1.91 16
23 O -0.48 -7.42 12.41 -31.87 -0.40 -7.81 16
24 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16
25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16
27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
28 H 0.05 0.72 7.59 -51.93 -0.39 0.33 16
29 H 0.06 0.93 5.28 -51.93 -0.27 0.65 16
30 H 0.08 1.49 6.96 -51.93 -0.36 1.13 16
31 H 0.15 1.94 6.19 -52.49 -0.33 1.62 16
32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16
33 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16
34 H 0.40 4.64 9.06 45.56 0.41 5.05 16
LS Contribution 292.33 15.07 4.41 4.41
Total: -1.00 -31.78 292.33 -5.74 -37.52
By element:
Atomic # 1 Polarization: 6.50 SS G_CDS: -2.80 Total: 3.70 kcal
Atomic # 6 Polarization: 0.61 SS G_CDS: -1.99 Total: -1.38 kcal
Atomic # 7 Polarization: -37.70 SS G_CDS: 0.14 Total: -37.56 kcal
Atomic # 8 Polarization: -20.62 SS G_CDS: -0.52 Total: -21.14 kcal
Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -31.78 -5.74 -37.52 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000128563413.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.447 kcal
(2) G-P(sol) polarization free energy of solvation -31.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds