Wall clock time and date at job start Mon Mar 30 2020 00:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47222 * 2 1 4 4 C 1.50701 * 109.46880 * 240.00368 * 2 1 3 5 5 H 1.08002 * 119.99791 * 239.99547 * 4 2 1 6 6 C 1.37877 * 120.00332 * 59.99838 * 4 2 1 7 7 N 1.31518 * 119.99712 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00176 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47174 * 60.00393 * 8 6 4 10 10 H 1.48497 * 109.47196 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47566 * 300.00219 * 8 6 4 12 12 N 1.46499 * 109.47430 * 120.00287 * 2 1 3 13 13 C 1.46502 * 120.00019 * 59.99724 * 12 2 1 14 14 C 1.34777 * 120.00161 * 239.99900 * 12 2 1 15 15 O 1.21590 * 119.99989 * 5.08600 * 14 12 2 16 16 C 1.47531 * 120.00070 * 185.08121 * 14 12 2 17 17 C 1.39724 * 120.18113 * 314.99168 * 16 14 12 18 18 C 1.37981 * 119.88314 * 179.78707 * 17 16 14 19 19 F 1.35103 * 119.88060 * 180.25112 * 18 17 16 20 20 C 1.38735 * 120.24756 * 0.46946 * 18 17 16 21 21 C 1.38050 * 120.36301 * 359.78366 * 20 18 17 22 22 C 1.38686 * 120.11800 * 359.97438 * 21 20 18 23 23 O 1.35697 * 120.13040 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47025 * 299.99865 * 1 2 3 26 26 H 1.09003 * 109.47355 * 59.99246 * 1 2 3 27 27 H 0.96995 * 119.99790 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47117 * 275.33064 * 13 12 2 29 29 H 1.08993 * 109.47334 * 155.32687 * 13 12 2 30 30 H 1.08998 * 109.46936 * 35.32754 * 13 12 2 31 31 H 1.07999 * 120.05859 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.82014 * 179.76392 * 20 18 17 33 33 H 1.08007 * 119.94439 * 179.97438 * 21 20 18 34 34 H 0.96704 * 113.99691 * 270.01907 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0083 10 1 1.8277 -0.4190 -5.2204 11 1 3.8072 -1.1189 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0110 1.1519 1.9399 16 6 3.3772 -0.7598 3.2284 17 6 2.5928 -1.6425 3.9753 18 6 3.1464 -2.3198 5.0423 19 9 2.3893 -3.1771 5.7613 20 6 4.4766 -2.1203 5.3825 21 6 5.2595 -1.2466 4.6548 22 6 4.7199 -0.5617 3.5764 23 8 5.4891 0.2975 2.8612 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 0.7094 1.1619 -3.4843 28 1 0.6911 -2.1465 1.9158 29 1 2.4166 -2.5571 2.0659 30 1 1.6221 -2.6196 0.4744 31 1 1.5558 -1.7966 3.7159 32 1 4.9018 -2.6512 6.2214 33 1 6.2941 -1.0962 4.9259 34 1 5.4751 1.2062 3.1918 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128563413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:05 Heat of formation + Delta-G solvation = -87.961935 kcal Electronic energy + Delta-G solvation = -20424.765985 eV Core-core repulsion = 17044.954590 eV Total energy + Delta-G solvation = -3379.811395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.97743 -40.26815 -38.26501 -36.52363 -35.31518 -33.06041 -31.48972 -29.46761 -29.01954 -26.31220 -25.24462 -24.07571 -22.75530 -21.16652 -19.11072 -18.30015 -17.31392 -16.90298 -16.46711 -16.00404 -15.67765 -15.40860 -15.20703 -14.43327 -14.26271 -14.02757 -13.79504 -13.15180 -13.02809 -12.51480 -12.20986 -12.06414 -11.91377 -11.59065 -11.36545 -11.06910 -10.85433 -10.75853 -10.65163 -10.28566 -10.17513 -9.31597 -9.20745 -9.01493 -8.57049 -8.43864 -7.65805 -6.08616 -4.16747 0.76602 0.96464 3.03637 3.28227 3.33130 3.34715 3.52162 3.82825 4.16285 4.18851 4.38707 4.59623 4.70763 4.99754 5.15555 5.22885 5.54118 5.68822 5.73788 5.83368 5.91475 5.96487 6.15480 6.34836 6.56721 6.73082 6.80379 7.02879 7.35105 7.48822 7.68890 7.70393 7.98577 8.15965 8.44217 8.77132 8.94970 9.49480 10.96783 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.005424 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.021611 B = 5160.868008 C = 5451.884656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.552 3.448 15 O -0.541 6.541 16 C -0.116 4.116 17 C -0.111 4.111 18 C 0.079 3.921 19 F -0.138 7.138 20 C -0.125 4.125 21 C -0.126 4.126 22 C 0.148 3.852 23 O -0.483 6.483 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.264 0.736 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -5.975 14.657 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.070 4.070 14 C 0.338 3.662 15 O -0.420 6.420 16 C -0.120 4.120 17 C -0.130 4.130 18 C 0.060 3.940 19 F -0.117 7.117 20 C -0.144 4.144 21 C -0.145 4.145 22 C 0.101 3.899 23 O -0.294 6.294 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 4.759 -5.739 14.066 15.920 hybrid contribution 0.037 -0.384 -0.479 0.615 sum 4.796 -6.123 13.588 15.656 Atomic orbital electron populations 1.22084 0.97977 0.99498 1.00918 1.18995 0.91020 0.94505 0.79557 0.91745 1.21267 1.31989 1.13149 0.90231 0.92227 1.24882 0.94879 0.94972 0.98954 1.69869 1.36240 1.22508 1.23931 0.86532 0.79297 0.79553 0.81888 1.20215 1.21127 1.20194 1.48182 1.47992 1.11662 1.23240 1.21915 0.98839 0.83481 1.02779 1.17856 0.79467 0.86802 0.82042 1.90729 1.61276 1.14725 1.75313 1.20550 0.93947 0.99087 0.98382 1.21415 1.01623 0.95746 0.94264 1.17480 0.89820 0.93546 0.93198 1.91507 1.75698 1.67824 1.76677 1.21079 0.92206 0.99821 1.01285 1.21227 1.00901 0.98011 0.94341 1.18439 0.87834 0.93355 0.90245 1.84730 1.66620 1.22599 1.55475 0.95079 0.96929 0.88705 0.92581 0.93425 0.92070 0.90056 0.83405 0.84193 0.83942 0.74183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.97 37.15 0.33 -3.17 16 2 C 0.26 6.65 2.63 -69.09 -0.18 6.47 16 3 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.34 8.03 -34.44 -0.28 -14.62 16 5 H 0.06 1.60 7.25 -52.49 -0.38 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.58 -12.64 2.75 -176.50 -0.49 -13.12 16 13 C 0.07 1.28 8.04 59.85 0.48 1.76 16 14 C 0.55 11.75 7.05 -12.47 -0.09 11.66 16 15 O -0.54 -13.21 15.68 -7.79 -0.12 -13.33 16 16 C -0.12 -1.92 5.08 -104.85 -0.53 -2.45 16 17 C -0.11 -1.54 7.43 -39.12 -0.29 -1.83 16 18 C 0.08 0.96 7.28 -39.49 -0.29 0.67 16 19 F -0.14 -1.68 17.26 2.25 0.04 -1.64 16 20 C -0.12 -1.30 10.01 -39.47 -0.39 -1.69 16 21 C -0.13 -1.40 9.97 -39.48 -0.39 -1.79 16 22 C 0.15 2.17 6.69 -38.71 -0.26 1.91 16 23 O -0.48 -7.42 12.41 -31.87 -0.40 -7.81 16 24 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 0.72 7.59 -51.93 -0.39 0.33 16 29 H 0.06 0.93 5.28 -51.93 -0.27 0.65 16 30 H 0.08 1.49 6.96 -51.93 -0.36 1.13 16 31 H 0.15 1.94 6.19 -52.49 -0.33 1.62 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.40 4.64 9.06 45.56 0.41 5.05 16 LS Contribution 292.33 15.07 4.41 4.41 Total: -1.00 -31.78 292.33 -5.74 -37.52 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -2.80 Total: 3.70 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.99 Total: -1.38 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.14 Total: -37.56 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.52 Total: -21.14 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.78 -5.74 -37.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128563413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.447 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds